NO25G01300, NO25G01300 (gene) Nannochloropsis oceanica

Overview
NameNO25G01300
Unique NameNO25G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2767
Alignment locationchr25:363846..366612 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:363846..366612 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA-14
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO25G01300 vs. NCBI_GenBank
Match: EWM21586.1 (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.700e-81
Identity = 162/250 (64.80%), Postives = 193/250 (77.20%), Query Frame = 0 
Query:   45 IYSTETKEEH---VDIIPLEIEDGRGAPTTSATDATIVGTVSHKASQGGFCARHKGKLICLGITFALLLAVAIAVPLLIPKDPTATLLEQSNLRLDGLGTGSVAVDLRFKVDNPNRYAISFQNLKLDVYNFNGAHIGEVTRQERFFVPGRSSELMTATAFMQPSFFEILAMGINCLQNDNLTKLKVRGTAEARFAGRTIQQEVGPFDQLTQCVATNINGRSS-PPPGVAPAGIGNGQIIQGIGQAIQDAL 291
            IYSTETKEE     DI+PLE+EDGR A +    +            + GFCARHKGKLI LGI   +L+A+AIA+PLL+PKDPTATLLEQSNLRLDGLG GS  +DL  KV NPN YAI+F++L+LDVY+F+GAHIGE+TR ERF V GRS+ +M ATA MQPSFFEIL+MG+NCLQNDNLTKLK++GT +ARFAGRT + +VGP +QLTQCVATNI G SS   PGV PA +GNGQII  IG+AI   +
Sbjct:   12 IYSTETKEEENGGRDILPLEMEDGRKAESAPPAE----------VKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSXXXPGVTPAAVGNGQIINSIGEAISQGI 251
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BLAST of NO25G01300 vs. NCBI_GenBank
Match: EWM27112.1 (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana] >EWM27113.1 hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 1.600e-21
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 0 
Query:   92 CARHKGKLICLGITFALLLAVAIAVPLLIPKDPTATLLEQSNLRLDGLGTGSVAVDLRFKVDNPNRYAISFQNLKLDVYNFNGAHIGEVTRQERFFVPGRSSELMTATAFMQPSFFEILAMGINCLQNDNLTKLKVRGTAEARFAGRTIQQEVGPFDQLTQCVATNIN 260
            C RH+GK ICLG+T  LLL + I + +  P+ P  TL   S L +DG  TG+ A    F++ N N Y +SFQNL  +VY+ NG  +G + R  RF V GR++  +TAT   + +  ++  +G++C+QN  +T L++R + +    G T ++ V     +  C   NIN
Sbjct:  108 CERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGF-TGATA-RFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLG-TTRRVVSSATVMVNCNVQNIN 272
The following BLAST results are available for this feature:
BLAST of NO25G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21586.11.700e-8164.80hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
EWM27112.11.600e-2136.90hypothetical protein Naga_100046g29 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004298NSK004298Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01300.1NO25G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|210690gene_8617Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g8gene8783Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01300.1NO25G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01300 ID=NO25G01300|Name=NO25G01300|organism=Nannochloropsis oceanica|type=gene|length=2767bp
ATGAACCCACAATTCGAAGACCACGGTGCCAACGGCCTTGCTAGAAGCAG
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAAGGACAACGACGACCGCATCTATTCCACCGAGACG
AAGGAAGAGCACGTGGATATCATCCCCCTTGAGATCGAAGATGGAAGAGG
GGCCCCAACGACTAGTGCCACTGATGCTACTATCGTCGGCACTGTCTCCC
ACAAAGCCTCTCAGGGAGGATTCTGCGCTCGCCACAAGGGCAAGCTTATC
TGCCTAGGTATTACCTTTGCCTTGCTGCTGGCCGTGGCGATCGCTGTCCC
GTTGCTTATTCCCAAGGATCCCACAGCTACTTTGTTGGAGCAGAGTAATC
TGAGGTTAGACGGGCTGGGAACAGGCAGTGTGGCGGTTGACCTGCGGTTC
AAAGTGGATAACCCGAACCGTTATGCCATTTCGTTCCAGAACTTGAAACT
AGgtagggttggatggggcaaagggaaaagagggagtgagaggagaagga
attgaaggaggatgggagggagggatggaataggcctagattggggtcga
aaagaaagagggagagggggaggggaggggagggcaggaggaagggaggg
aagcaaggagggaggtagggagggatagcaggatcatgtattccaggtcg
tagctctcaatacgtttctcctccctcccaccctccgccctagACGTATA
CAATTTTAACGGCGCCCATATCGGAGAGGTCACCCGTCAGGAACGTTTTT
TTGTGCCTGGCCGTTCGTCCGAGTTGATGACAGCTACTGCTTTCATGCAG
CCATCTTTTTTCGAGATCCTTGCCATGGGGATTAATTGCTTACAGAATGA
TAACCTAACCAAGCTCAAAGTGAGGGGGACAGCGGAGGCACGCTTTGCGG
GGAGGACGATTCAGCAGGAGgtaagctcatctgggtggggatgttggtgt
gattgtgcgttggtgtggatacgggatggtttgaacttgcacttgcatgt
ttgagggtgggtaggtggatgggtgggcgggtataatcgaatcaagctca
gggttaggcggacggtggagaccctttttccagagagggagtcaatggtt
ttgctttctctgccttctcctcctctttctcctcctcttcctcctcccct
ttctgctacttatgggggtgttgttgatacgatttagccagacccccccc
cccccattttttctactcaatctctttgctcttctcgatctttctcgcgc
tgggatgccaacctctttaattgcttgcccttgaagaagttgggcagagg
gacggacaaatcgcacctacatgtcgccccctctccttcctccttcccct
cttctttccacccaccccttccctccctcttctctccctgacattccatg
cttttcggctccttcttcttttctcttgacagGTGGGTCCATTCGATCAG
TTAACGCAGTGTGTTGCCACCAATATCAACGGCCGGTCGAGTCCTCCTCC
AGGCGTGGCACCAGCAGGCATAGGGAACGGGCAGgtaagaagagagttgt
ctcctcccttccttcctttctccttcccacccttccaccttctccccctc
cttcacttcttttggtctgatcgccgttctggtacctcttttaattcttc
cctctctcacttgctcactccttcctcactcgcccccctaaagATAATTC
AAGGTATTGGCCAGGCAATCCAAGACGCCTTAAATGGTGCTGGTACAGCC
TCTGGTGGTGCTGGTGCCGCTCCAGTGCCGGGTACTGCCCCTGTTGCACC
AAATGTGGGTCGTACTAGTGCTGCTCCGGCGCCCCGCGCCTTCACTGTCG
CACCAGATGGGATATCGCCAATGAACCCGTAAGTAACCGCAGCAGCTGCA
GGTGCAGCAGCAGTTGCATGGTGAGAAAGAGAAGGAAAGTGGATAGGTTT
GTGTTGCCGTATGGGGTTATGTGGGAACGTAGAGAGCTTCCTTTTATGGC
CACGTCTGGTGATGAAAGTGAGAGAGTGAAAGTGCGTGTTTTGATAAAAT
AGAGGCGACAGCTGAGGGCTGCTGTGTGTGGTGGCAGAGGGAGAGGTGAA
TGAAGGCTTTGCATTTTGGGGGCATGTGAGTGAATGGGAATGAAAGTGAT
AAAATTGATCTGAAGGAACGAGTACGAGAGGATGAAAATGACAATATTTG
CCTGTCTATGTGTGTCGGTGTGGGTTGGTTTTGGGGGTAAGGGGGAGGGG
AGAGGGTGACGAGAGAAAAAGAGAGTAGAGGGAGAGCCATGTGATTAGTG
TGTTACTTAAGCAAAGAGATCGAAGTTTACCATGTCATGTTTTGTATGAA
GGTTTTCATTATTCTTTGAGAATGAATGACAATCGAGAAACCATCAACAA
AAAGGAAAGGCTCATACGGAGTTTTATAGAAAGGGTCCGCTGTAAGAGTG
CACGTGCGAGTGTGCTTTTGCCTGTATGTTGTGGGAAGTGTGTGTGTGAC
ACAAGGGGCTGCCACAACCCTCGCGGCCTGGACCTTGTTCAGGGAAACCA
AAGTCAGGCAAGCGAAGGAGCGAGTGACAGAATGAAGGGACGAAAAAAGA
TGGGATGAACAAAGAAACAACACAAAAATGCATGCATTATTATCGGTAGG
TGGCTTCATATGGCGCGACCCATGAATCCCCCACGATCGTGTCCCTCTCC
TCCCATTTATTTCACAC
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protein sequence of NO25G01300.1

>NO25G01300.1-protein ID=NO25G01300.1-protein|Name=NO25G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MNPQFEDHGANGLARSSNNNNNNNNNNNNNNNNNNNNHKDNDDRIYSTET
KEEHVDIIPLEIEDGRGAPTTSATDATIVGTVSHKASQGGFCARHKGKLI
CLGITFALLLAVAIAVPLLIPKDPTATLLEQSNLRLDGLGTGSVAVDLRF
KVDNPNRYAISFQNLKLDVYNFNGAHIGEVTRQERFFVPGRSSELMTATA
FMQPSFFEILAMGINCLQNDNLTKLKVRGTAEARFAGRTIQQEVGPFDQL
TQCVATNINGRSSPPPGVAPAGIGNGQIIQGIGQAIQDALNGAGTASGGA
GAAPVPGTAPVAPNVGRTSAAPAPRAFTVAPDGISPMNP*
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Synonyms
Publications