NO25G01300.1, NO25G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01300.1
Unique NameNO25G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1855
Alignment locationchr25:363846..366612 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:363846..366612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01300.1 vs.
Match: EWM21586.1 (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 2.300e-81
Identity = 179/314 (57.01%), Postives = 219/314 (69.75%), Query Frame = 0 
Query:   45 IYSTETKEEHV---DIIPLEIEDGRGAPTTSATDATIVGTVSHKASQGGFCARHKGKLICLGITFALLLAVAIAVPLLIPKDPTATLLEQSNLRLDGLGTGSVAVDLRFKVDNPNRYAISFQNLKLDVYNFNGAHIGEVTRQERFFVPGRSSELMTATAFMQPSFFEILAMGINCLQNDNLTKLKVRGTAEARFAGRTIQQEVGPFDQLTQCVATNINGRSS-PPPGVAPAGIGNGQIIQGIGQAI-----------QDALNGAGTASGGAG-----AAPVPGTAPVAP--NVGRTSAAPAPRAFTVAPDGISP 337
            IYSTETKEE     DI+PLE+EDGR A +    +            + GFCARHKGKLI LGI   +L+A+AIA+PLL+PKDPTATLLEQSNLRLDGLG GS  +DL  KV NPN YAI+F++L+LDVY+F+GAHIGE+TR ERF V GRS+ +M ATA MQPSFFEIL+MG+NCLQNDNLTKLK++GT +ARFAGRT + +VGP +QLTQCVATNI G SS PPPGV PA +GNGQII  IG+AI           Q A +    A G  G     ++P PG+    P  ++  T+ + AP + T    G+ P
Sbjct:   12 IYSTETKEEENGGRDILPLEMEDGRKAESAPPAEV----------KKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSPPPPGVTPAAVGNGQIINSIGEAISQGIQRLRGGRQGAASQVSAAPGNRGPNPVASSPFPGSRRSDPINSMPGTATSGAPFSNTQNTAGVQP 315
The following BLAST results are available for this feature:
BLAST of NO25G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21586.12.300e-8157.01hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01300NO25G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01300.1NO25G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01300.1.cds1NO25G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01300.1.cds2NO25G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01300.1.cds3NO25G01300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01300.1.cds4NO25G01300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01300.1 ID=NO25G01300.1|Name=NO25G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp
ATGAACCCACAATTCGAAGACCACGGTGCCAACGGCCTTGCTAGAAGCAG
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAAGGACAACGACGACCGCATCTATTCCACCGAGACG
AAGGAAGAGCACGTGGATATCATCCCCCTTGAGATCGAAGATGGAAGAGG
GGCCCCAACGACTAGTGCCACTGATGCTACTATCGTCGGCACTGTCTCCC
ACAAAGCCTCTCAGGGAGGATTCTGCGCTCGCCACAAGGGCAAGCTTATC
TGCCTAGGTATTACCTTTGCCTTGCTGCTGGCCGTGGCGATCGCTGTCCC
GTTGCTTATTCCCAAGGATCCCACAGCTACTTTGTTGGAGCAGAGTAATC
TGAGGTTAGACGGGCTGGGAACAGGCAGTGTGGCGGTTGACCTGCGGTTC
AAAGTGGATAACCCGAACCGTTATGCCATTTCGTTCCAGAACTTGAAACT
AGACGTATACAATTTTAACGGCGCCCATATCGGAGAGGTCACCCGTCAGG
AACGTTTTTTTGTGCCTGGCCGTTCGTCCGAGTTGATGACAGCTACTGCT
TTCATGCAGCCATCTTTTTTCGAGATCCTTGCCATGGGGATTAATTGCTT
ACAGAATGATAACCTAACCAAGCTCAAAGTGAGGGGGACAGCGGAGGCAC
GCTTTGCGGGGAGGACGATTCAGCAGGAGGTGGGTCCATTCGATCAGTTA
ACGCAGTGTGTTGCCACCAATATCAACGGCCGGTCGAGTCCTCCTCCAGG
CGTGGCACCAGCAGGCATAGGGAACGGGCAGATAATTCAAGGTATTGGCC
AGGCAATCCAAGACGCCTTAAATGGTGCTGGTACAGCCTCTGGTGGTGCT
GGTGCCGCTCCAGTGCCGGGTACTGCCCCTGTTGCACCAAATGTGGGTCG
TACTAGTGCTGCTCCGGCGCCCCGCGCCTTCACTGTCGCACCAGATGGGA
TATCGCCAATGAACCCGTAAGTAACCGCAGCAGCTGCAGGTGCAGCAGCA
GTTGCATGGTGAGAAAGAGAAGGAAAGTGGATAGGTTTGTGTTGCCGTAT
GGGGTTATGTGGGAACGTAGAGAGCTTCCTTTTATGGCCACGTCTGGTGA
TGAAAGTGAGAGAGTGAAAGTGCGTGTTTTGATAAAATAGAGGCGACAGC
TGAGGGCTGCTGTGTGTGGTGGCAGAGGGAGAGGTGAATGAAGGCTTTGC
ATTTTGGGGGCATGTGAGTGAATGGGAATGAAAGTGATAAAATTGATCTG
AAGGAACGAGTACGAGAGGATGAAAATGACAATATTTGCCTGTCTATGTG
TGTCGGTGTGGGTTGGTTTTGGGGGTAAGGGGGAGGGGAGAGGGTGACGA
GAGAAAAAGAGAGTAGAGGGAGAGCCATGTGATTAGTGTGTTACTTAAGC
AAAGAGATCGAAGTTTACCATGTCATGTTTTGTATGAAGGTTTTCATTAT
TCTTTGAGAATGAATGACAATCGAGAAACCATCAACAAAAAGGAAAGGCT
CATACGGAGTTTTATAGAAAGGGTCCGCTGTAAGAGTGCACGTGCGAGTG
TGCTTTTGCCTGTATGTTGTGGGAAGTGTGTGTGTGACACAAGGGGCTGC
CACAACCCTCGCGGCCTGGACCTTGTTCAGGGAAACCAAAGTCAGGCAAG
CGAAGGAGCGAGTGACAGAATGAAGGGACGAAAAAAGATGGGATGAACAA
AGAAACAACACAAAAATGCATGCATTATTATCGGTAGGTGGCTTCATATG
GCGCGACCCATGAATCCCCCACGATCGTGTCCCTCTCCTCCCATTTATTT
CACAC
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protein sequence of NO25G01300.1

>NO25G01300.1-protein ID=NO25G01300.1-protein|Name=NO25G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MNPQFEDHGANGLARSSNNNNNNNNNNNNNNNNNNNNHKDNDDRIYSTET
KEEHVDIIPLEIEDGRGAPTTSATDATIVGTVSHKASQGGFCARHKGKLI
CLGITFALLLAVAIAVPLLIPKDPTATLLEQSNLRLDGLGTGSVAVDLRF
KVDNPNRYAISFQNLKLDVYNFNGAHIGEVTRQERFFVPGRSSELMTATA
FMQPSFFEILAMGINCLQNDNLTKLKVRGTAEARFAGRTIQQEVGPFDQL
TQCVATNINGRSSPPPGVAPAGIGNGQIIQGIGQAIQDALNGAGTASGGA
GAAPVPGTAPVAPNVGRTSAAPAPRAFTVAPDGISPMNP*
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mRNA from alignment at chr25:363846..366612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01300.1 ID=NO25G01300.1|Name=NO25G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2767bp|location=Sequence derived from alignment at chr25:363846..366612+ (Nannochloropsis oceanica)
ATGAACCCACAATTCGAAGACCACGGTGCCAACGGCCTTGCTAGAAGCAG
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAAGGACAACGACGACCGCATCTATTCCACCGAGACG
AAGGAAGAGCACGTGGATATCATCCCCCTTGAGATCGAAGATGGAAGAGG
GGCCCCAACGACTAGTGCCACTGATGCTACTATCGTCGGCACTGTCTCCC
ACAAAGCCTCTCAGGGAGGATTCTGCGCTCGCCACAAGGGCAAGCTTATC
TGCCTAGGTATTACCTTTGCCTTGCTGCTGGCCGTGGCGATCGCTGTCCC
GTTGCTTATTCCCAAGGATCCCACAGCTACTTTGTTGGAGCAGAGTAATC
TGAGGTTAGACGGGCTGGGAACAGGCAGTGTGGCGGTTGACCTGCGGTTC
AAAGTGGATAACCCGAACCGTTATGCCATTTCGTTCCAGAACTTGAAACT
AGGTAGGGTTGGATGGGGCAAAGGGAAAAGAGGGAGTGAGAGGAGAAGGA
ATTGAAGGAGGATGGGAGGGAGGGATGGAATAGGCCTAGATTGGGGTCGA
AAAGAAAGAGGGAGAGGGGGAGGGGAGGGGAGGGCAGGAGGAAGGGAGGG
AAGCAAGGAGGGAGGTAGGGAGGGATAGCAGGATCATGTATTCCAGGTCG
TAGCTCTCAATACGTTTCTCCTCCCTCCCACCCTCCGCCCTAGACGTATA
CAATTTTAACGGCGCCCATATCGGAGAGGTCACCCGTCAGGAACGTTTTT
TTGTGCCTGGCCGTTCGTCCGAGTTGATGACAGCTACTGCTTTCATGCAG
CCATCTTTTTTCGAGATCCTTGCCATGGGGATTAATTGCTTACAGAATGA
TAACCTAACCAAGCTCAAAGTGAGGGGGACAGCGGAGGCACGCTTTGCGG
GGAGGACGATTCAGCAGGAGGTAAGCTCATCTGGGTGGGGATGTTGGTGT
GATTGTGCGTTGGTGTGGATACGGGATGGTTTGAACTTGCACTTGCATGT
TTGAGGGTGGGTAGGTGGATGGGTGGGCGGGTATAATCGAATCAAGCTCA
GGGTTAGGCGGACGGTGGAGACCCTTTTTCCAGAGAGGGAGTCAATGGTT
TTGCTTTCTCTGCCTTCTCCTCCTCTTTCTCCTCCTCTTCCTCCTCCCCT
TTCTGCTACTTATGGGGGTGTTGTTGATACGATTTAGCCAGACCCCCCCC
CCCCCATTTTTTCTACTCAATCTCTTTGCTCTTCTCGATCTTTCTCGCGC
TGGGATGCCAACCTCTTTAATTGCTTGCCCTTGAAGAAGTTGGGCAGAGG
GACGGACAAATCGCACCTACATGTCGCCCCCTCTCCTTCCTCCTTCCCCT
CTTCTTTCCACCCACCCCTTCCCTCCCTCTTCTCTCCCTGACATTCCATG
CTTTTCGGCTCCTTCTTCTTTTCTCTTGACAGGTGGGTCCATTCGATCAG
TTAACGCAGTGTGTTGCCACCAATATCAACGGCCGGTCGAGTCCTCCTCC
AGGCGTGGCACCAGCAGGCATAGGGAACGGGCAGGTAAGAAGAGAGTTGT
CTCCTCCCTTCCTTCCTTTCTCCTTCCCACCCTTCCACCTTCTCCCCCTC
CTTCACTTCTTTTGGTCTGATCGCCGTTCTGGTACCTCTTTTAATTCTTC
CCTCTCTCACTTGCTCACTCCTTCCTCACTCGCCCCCCTAAAGATAATTC
AAGGTATTGGCCAGGCAATCCAAGACGCCTTAAATGGTGCTGGTACAGCC
TCTGGTGGTGCTGGTGCCGCTCCAGTGCCGGGTACTGCCCCTGTTGCACC
AAATGTGGGTCGTACTAGTGCTGCTCCGGCGCCCCGCGCCTTCACTGTCG
CACCAGATGGGATATCGCCAATGAACCCGTAAGTAACCGCAGCAGCTGCA
GGTGCAGCAGCAGTTGCATGGTGAGAAAGAGAAGGAAAGTGGATAGGTTT
GTGTTGCCGTATGGGGTTATGTGGGAACGTAGAGAGCTTCCTTTTATGGC
CACGTCTGGTGATGAAAGTGAGAGAGTGAAAGTGCGTGTTTTGATAAAAT
AGAGGCGACAGCTGAGGGCTGCTGTGTGTGGTGGCAGAGGGAGAGGTGAA
TGAAGGCTTTGCATTTTGGGGGCATGTGAGTGAATGGGAATGAAAGTGAT
AAAATTGATCTGAAGGAACGAGTACGAGAGGATGAAAATGACAATATTTG
CCTGTCTATGTGTGTCGGTGTGGGTTGGTTTTGGGGGTAAGGGGGAGGGG
AGAGGGTGACGAGAGAAAAAGAGAGTAGAGGGAGAGCCATGTGATTAGTG
TGTTACTTAAGCAAAGAGATCGAAGTTTACCATGTCATGTTTTGTATGAA
GGTTTTCATTATTCTTTGAGAATGAATGACAATCGAGAAACCATCAACAA
AAAGGAAAGGCTCATACGGAGTTTTATAGAAAGGGTCCGCTGTAAGAGTG
CACGTGCGAGTGTGCTTTTGCCTGTATGTTGTGGGAAGTGTGTGTGTGAC
ACAAGGGGCTGCCACAACCCTCGCGGCCTGGACCTTGTTCAGGGAAACCA
AAGTCAGGCAAGCGAAGGAGCGAGTGACAGAATGAAGGGACGAAAAAAGA
TGGGATGAACAAAGAAACAACACAAAAATGCATGCATTATTATCGGTAGG
TGGCTTCATATGGCGCGACCCATGAATCCCCCACGATCGTGTCCCTCTCC
TCCCATTTATTTCACAC
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Coding sequence (CDS) from alignment at chr25:363846..366612+

>NO25G01300.1 ID=NO25G01300.1|Name=NO25G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr25:363846..366612+ (Nannochloropsis oceanica)
ATGAACCCACAATTCGAAGACCACGGTGCCAACGGCCTTGCTAGAAGCAG
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAAGGACAACGACGACCGCATCTATTCCACCGAGACG
AAGGAAGAGCACGTGGATATCATCCCCCTTGAGATCGAAGATGGAAGAGG
GGCCCCAACGACTAGTGCCACTGATGCTACTATCGTCGGCACTGTCTCCC
ACAAAGCCTCTCAGGGAGGATTCTGCGCTCGCCACAAGGGCAAGCTTATC
TGCCTAGGTATTACCTTTGCCTTGCTGCTGGCCGTGGCGATCGCTGTCCC
GTTGCTTATTCCCAAGGATCCCACAGCTACTTTGTTGGAGCAGAGTAATC
TGAGGTTAGACGGGCTGGGAACAGGCAGTGTGGCGGTTGACCTGCGGTTC
AAAGTGGATAACCCGAACCGTTATGCCATTTCGTTCCAGAACTTGAAACT
AGACGTATACAATTTTAACGGCGCCCATATCGGAGAGGTCACCCGTCAGG
AACGTTTTTTTGTGCCTGGCCGTTCGTCCGAGTTGATGACAGCTACTGCT
TTCATGCAGCCATCTTTTTTCGAGATCCTTGCCATGGGGATTAATTGCTT
ACAGAATGATAACCTAACCAAGCTCAAAGTGAGGGGGACAGCGGAGGCAC
GCTTTGCGGGGAGGACGATTCAGCAGGAGGTGGGTCCATTCGATCAGTTA
ACGCAGTGTGTTGCCACCAATATCAACGGCCGGTCGAGTCCTCCTCCAGG
CGTGGCACCAGCAGGCATAGGGAACGGGCAGATAATTCAAGGTATTGGCC
AGGCAATCCAAGACGCCTTAAATGGTGCTGGTACAGCCTCTGGTGGTGCT
GGTGCCGCTCCAGTGCCGGGTACTGCCCCTGTTGCACCAAATGTGGGTCG
TACTAGTGCTGCTCCGGCGCCCCGCGCCTTCACTGTCGCACCAGATGGGA
TATCGCCAATGAACCCGTAA
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Synonyms
Publications