NO25G01280, NO25G01280 (gene) Nannochloropsis oceanica

Overview
NameNO25G01280
Unique NameNO25G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length705
Alignment locationchr25:359683..360387 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:359683..360387 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G01280 vs. NCBI_GenBank
Match: EWM21640.1 (hypothetical protein Naga_100012g10 [Nannochloropsis gaditana])

HSP 1 Score: 124.0 bits (310), Expect = 4.200e-25
Identity = 69/134 (51.49%), Postives = 83/134 (61.94%), Query Frame = 0 
Query:    1 MSAIRQIVFVSQTVARPAAKTHVRRLSSSVSSGG---PPPTSAGRCRCWPNPPCHHHATGACGYSQFECGGGAGGCTPAEYHQAAASGMSLTASSSFQATTSKMLTGASQKVGLQCQSLLNGILFDSERAAGAT 132
            M+++RQ+  V+QT ARP A+ HVR LS+S S  G   P  T AG+CRCWPNPPCHHHATGACGYSQFEC GG                              ++L GASQ VG QCQ+LLNG+LFD++RAA  T
Sbjct:    1 MNSVRQLASVTQTAARPVARRHVRNLSTSASPSGTGVPAGTFAGKCRCWPNPPCHHHATGACGYSQFECDGG----XXXXXXXXXXXXXXXXXXXXXXXXXXQILAGASQAVGRQCQTLLNGMLFDTDRAAAMT 130
The following BLAST results are available for this feature:
BLAST of NO25G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21640.14.200e-2551.49hypothetical protein Naga_100012g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004300NSK004300Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01280.1NO25G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100012g10gene8785Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01280.1NO25G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01280 ID=NO25G01280|Name=NO25G01280|organism=Nannochloropsis oceanica|type=gene|length=705bp
ATGAGCGCCATACGACAAATCGTCTTTGTCTCTCAAACCGTGGCTCGCCC
CGCAGCAAAGACGCACGTCCGCCGGCTTTCTAGCTCTGTTTCCTCTGGAG
GGCCCCCCCCGgtaagttctgaggagggtatttgccttgtgattctacgc
tgcgcgtccgatgcaccctctttcccgccatgtgtctatgcgtacgatcc
attacattgatatcggaatgtctactagccatgaggtatccgcgacgggg
atctctggaccataccatcttttccaggcccttacctccctctccctctc
accccccctcccacccaatcgcaaataaagACCAGCGCCGGACGCTGTCG
ATGCTGGCCTAACCCTCCTTGCCACCACCATGCCACTGGTGCGTGTGGAT
ATTCGCAATTTGAGTGCGGGGGGGGGGCTGGGGGATGCACTCCGGCTGAG
TACCATCAAGCAGCAGCCTCGGGCATGAGCCTAACGGCTTCTTCTTCTTT
CCAGGCTACCACATCAAAGATGCTGACAGGGGCGAGCCAAAAAGTGGGGT
TGCAGTGCCAATCGCTGCTGAACGGGATTTTATTTGATTCGGAGCGTGCG
GCGGGTGCTACGGCGACGATGGTGATGACGGGAGGGGGGGGAAAGGGGGC
GAGGAGGTGTCATTCTCGAGGTAACAAAATGGAAGGGGAAGTTTTTTTGT
TTTGA
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protein sequence of NO25G01280.1

>NO25G01280.1-protein ID=NO25G01280.1-protein|Name=NO25G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSAIRQIVFVSQTVARPAAKTHVRRLSSSVSSGGPPPTSAGRCRCWPNPP
CHHHATGACGYSQFECGGGAGGCTPAEYHQAAASGMSLTASSSFQATTSK
MLTGASQKVGLQCQSLLNGILFDSERAAGATATMVMTGGGGKGARRCHSR
GNKMEGEVFLF*
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Synonyms
Publications