NO25G01280.1, NO25G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01280.1
Unique NameNO25G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length486
Alignment locationchr25:359683..360387 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:359683..360387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G01280.1 vs.
Match: EWM21640.1 (hypothetical protein Naga_100012g10 [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 6.700e-39
Identity = 89/135 (65.93%), Postives = 106/135 (78.52%), Query Frame = 0 
Query:    1 MSAIRQIVFVSQTVARPAAKTHVRRLSSSVSSGG---PPPTSAGRCRCWPNPPCHHHATGACGYSQFECGGGA-GGCTPAEYHQAAASGMSLTASSSFQATTSKMLTGASQKVGLQCQSLLNGILFDSERAAGAT 132
            M+++RQ+  V+QT ARP A+ HVR LS+S S  G   P  T AG+CRCWPNPPCHHHATGACGYSQFEC GGA GGC+PA+YHQAAASG     SSS Q +TS++L GASQ VG QCQ+LLNG+LFD++RAA  T
Sbjct:    1 MNSVRQLASVTQTAARPVARRHVRNLSTSASPSGTGVPAGTFAGKCRCWPNPPCHHHATGACGYSQFECDGGAGGGCSPAQYHQAAASG-----SSSIQTSTSQILAGASQAVGRQCQTLLNGMLFDTDRAAAMT 130
The following BLAST results are available for this feature:
BLAST of NO25G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21640.16.700e-3965.93hypothetical protein Naga_100012g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01280NO25G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01280.1NO25G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01280.1.cds1NO25G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01280.1.cds2NO25G01280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01280.1 ID=NO25G01280.1|Name=NO25G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=486bp
ATGAGCGCCATACGACAAATCGTCTTTGTCTCTCAAACCGTGGCTCGCCC
CGCAGCAAAGACGCACGTCCGCCGGCTTTCTAGCTCTGTTTCCTCTGGAG
GGCCCCCCCCGACCAGCGCCGGACGCTGTCGATGCTGGCCTAACCCTCCT
TGCCACCACCATGCCACTGGTGCGTGTGGATATTCGCAATTTGAGTGCGG
GGGGGGGGCTGGGGGATGCACTCCGGCTGAGTACCATCAAGCAGCAGCCT
CGGGCATGAGCCTAACGGCTTCTTCTTCTTTCCAGGCTACCACATCAAAG
ATGCTGACAGGGGCGAGCCAAAAAGTGGGGTTGCAGTGCCAATCGCTGCT
GAACGGGATTTTATTTGATTCGGAGCGTGCGGCGGGTGCTACGGCGACGA
TGGTGATGACGGGAGGGGGGGGAAAGGGGGCGAGGAGGTGTCATTCTCGA
GGTAACAAAATGGAAGGGGAAGTTTTTTTGTTTTGA
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protein sequence of NO25G01280.1

>NO25G01280.1-protein ID=NO25G01280.1-protein|Name=NO25G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSAIRQIVFVSQTVARPAAKTHVRRLSSSVSSGGPPPTSAGRCRCWPNPP
CHHHATGACGYSQFECGGGAGGCTPAEYHQAAASGMSLTASSSFQATTSK
MLTGASQKVGLQCQSLLNGILFDSERAAGATATMVMTGGGGKGARRCHSR
GNKMEGEVFLF*
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mRNA from alignment at chr25:359683..360387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01280.1 ID=NO25G01280.1|Name=NO25G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=705bp|location=Sequence derived from alignment at chr25:359683..360387+ (Nannochloropsis oceanica)
ATGAGCGCCATACGACAAATCGTCTTTGTCTCTCAAACCGTGGCTCGCCC
CGCAGCAAAGACGCACGTCCGCCGGCTTTCTAGCTCTGTTTCCTCTGGAG
GGCCCCCCCCGGTAAGTTCTGAGGAGGGTATTTGCCTTGTGATTCTACGC
TGCGCGTCCGATGCACCCTCTTTCCCGCCATGTGTCTATGCGTACGATCC
ATTACATTGATATCGGAATGTCTACTAGCCATGAGGTATCCGCGACGGGG
ATCTCTGGACCATACCATCTTTTCCAGGCCCTTACCTCCCTCTCCCTCTC
ACCCCCCCTCCCACCCAATCGCAAATAAAGACCAGCGCCGGACGCTGTCG
ATGCTGGCCTAACCCTCCTTGCCACCACCATGCCACTGGTGCGTGTGGAT
ATTCGCAATTTGAGTGCGGGGGGGGGGCTGGGGGATGCACTCCGGCTGAG
TACCATCAAGCAGCAGCCTCGGGCATGAGCCTAACGGCTTCTTCTTCTTT
CCAGGCTACCACATCAAAGATGCTGACAGGGGCGAGCCAAAAAGTGGGGT
TGCAGTGCCAATCGCTGCTGAACGGGATTTTATTTGATTCGGAGCGTGCG
GCGGGTGCTACGGCGACGATGGTGATGACGGGAGGGGGGGGAAAGGGGGC
GAGGAGGTGTCATTCTCGAGGTAACAAAATGGAAGGGGAAGTTTTTTTGT
TTTGA
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Coding sequence (CDS) from alignment at chr25:359683..360387+

>NO25G01280.1 ID=NO25G01280.1|Name=NO25G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at chr25:359683..360387+ (Nannochloropsis oceanica)
ATGAGCGCCATACGACAAATCGTCTTTGTCTCTCAAACCGTGGCTCGCCC
CGCAGCAAAGACGCACGTCCGCCGGCTTTCTAGCTCTGTTTCCTCTGGAG
GGCCCCCCCCGACCAGCGCCGGACGCTGTCGATGCTGGCCTAACCCTCCT
TGCCACCACCATGCCACTGGTGCGTGTGGATATTCGCAATTTGAGTGCGG
GGGGGGGGCTGGGGGATGCACTCCGGCTGAGTACCATCAAGCAGCAGCCT
CGGGCATGAGCCTAACGGCTTCTTCTTCTTTCCAGGCTACCACATCAAAG
ATGCTGACAGGGGCGAGCCAAAAAGTGGGGTTGCAGTGCCAATCGCTGCT
GAACGGGATTTTATTTGATTCGGAGCGTGCGGCGGGTGCTACGGCGACGA
TGGTGATGACGGGAGGGGGGGGAAAGGGGGCGAGGAGGTGTCATTCTCGA
GGTAACAAAATGGAAGGGGAAGTTTTTTTGTTTTGA
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Synonyms
Publications