NO25G01040, NO25G01040 (gene) Nannochloropsis oceanica

Overview
NameNO25G01040
Unique NameNO25G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1841
Alignment locationchr25:289086..290926 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:289086..290926 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO25G01040 vs. NCBI_GenBank
Match: EWM21632.1 (hypothetical protein Naga_100012g33 [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 6.500e-71
Identity = 158/328 (48.17%), Postives = 208/328 (63.41%), Query Frame = 0 
Query:   12 ISLLFILLTPT-EARVWGKVIHPPEVLAAVPEIHLQAQWLHAHLEELPAITPALEPYWDNATVRPILEAVKRSSNPSYQIRKIDPQAIGWHRVYKRRQKKTSKHDTLPLANATAEHQEEERP----GGEE--DESMFEYEYVDDESISFLESLWEXXXXXXXXXXXXXXXXXXXXXXXSTLLGPYMVFLLTAFSSDPFSLHLETLINQLAPAFPHVLFLKGDGQQDFSGLTSQIRVKGLPQLLIFEENLLRSRYKAKTKDLKSVLNFLVLHTGALPQAVVGKGRRGGGERRFVVRLPRGAGGEREGMSVWGGMGWLYWISALYVLGEW 333
            +SL  +   P+ EARVW +V+HPP+ L AVPE+H +A WL  H  +LP +TPAL PYW+N T+RPIL A++RS+NP Y IR +DP  +GWHRVY+RRQ +  + D  P                  GG E  DE MF  EYVDDES+S+L+ +WE                       S L+GP+MV L+T+   DPFS HLE  + Q+APAFPHVLFLKG+G +DFSGL +QI VKGLPQ+L+FEENLLR R++   K ++++L+FLVLHTG LP+AVV     G  E + +VRLP         M    G+GW+Y +S ++VLGEW
Sbjct:  101 LSLFILFFCPSIEARVWARVVHPPKTLQAVPEVH-EAGWLRLHSNDLPNVTPALTPYWENVTIRPILSAIQRSANPWYTIRSLDPGTMGWHRVYRRRQ-RVPRRDLNPXXXXXXXXXXXXXXXXXFGGPEGGDEGMF--EYVDDESLSYLQPVWE---ERKRGAVASLGGRRGAEANPSLLIGPFMVLLITSSPFDPFSNHLEARVTQVAPAFPHVLFLKGEG-KDFSGLVAQISVKGLPQVLLFEENLLRGRFRG-VKTVRNLLSFLVLHTGCLPRAVV--TGNGEPEDKLMVRLP---------MVDEPGLGWIYALSVIWVLGEW 408
The following BLAST results are available for this feature:
BLAST of NO25G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21632.16.500e-7148.17hypothetical protein Naga_100012g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004325NSK004325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01040.1NO25G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603259gene_8589Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g33gene8807Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01040.1NO25G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01040 ID=NO25G01040|Name=NO25G01040|organism=Nannochloropsis oceanica|type=gene|length=1841bp
TCTTAAATCATCTATTCATCGCCCAAACCCAGAATTACATATAAACTGAG
TCGTCTTACAAGCTTTTCAGCAGACACATAAATGCACTCTGGTACACAGC
CCGAAGACAGAACTTGCCGAAGACCGCATCGTCAGCTAGTCCAGTCAACA
GTGGAATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCCTCCTG
TTCATCCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTCATCCA
TCCTCCTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGCCCAGT
GGCTGCACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCCTGGAG
CCCTATTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTCAAGCG
ATgtaagtgtgttggggagatgacagggaggaagagagtgggggaagctc
tattaatgccaggccccgtgtctacaaataaagcatgcgcaagaaaaagc
tcaatatgcttacgtactcgttcattcacttacacatcgcaaaatccacg
cacacgctcaaccacagCTTCCAACCCCTCCTACCAAATTAGAAAAATTG
ACCCACAAGCTATCGGTTGGCATCGCGTGTACAAACGTCGGCAAAAAAAG
ACGAGCAAGCACGATACTCTCCCACTTGCAAACGCCACCGCTGAGCACCA
AGAGGAAGAGAGGCCGGGCGGGGAGGAAGACGAATCCATGTTTGAATATG
AATACGTCGACGACGAATCTATCTCTTTTCTAGAATCACTTTGGGAGGAA
AAGAGGGCAGCAGCCGCCGCCGCTGCCGCAACGGTTCGAGCAGAAGCAGC
GGCAGCAGAAGATCCCTCTACCCTGCTGGGGCCCTACATGGTCTTTCTCC
TCACCGCCTTCTCCTCCGATCCATTTTCTCTCCACCTGGAGACCCTCATC
AACCAGTTAGCCCCCGCATTCCCTCATGTCCTCTTCCTCAAGGGTGACGG
TCAGCAAGATTTTTCCGGGTTGACCTCCCAAATACGCGTCAAAGGGCTAC
CGCAGCTCCTCATATTCGAAGAAAATTTGTTAAGAAGTAGGTATAAGGCC
AAAACCAAAGATTTAAAATCCGTTTTGAACTTCTTGGTGTTGCATACGGG
AGCATTGCCCCAGGCTGTGGTAGGGAAGGGAAGGAGGGGAGGAGGCGAGC
GAAGATTTGTGGTTAGGTTGCCGAGGGGGGCGGGCGGAGAGAGGGAGGGA
ATGAGCGTTTGGGGGGGGATGGGATGGTTATATTGGATTAGTGCTTTGTA
TGTGCTGGGGGAATGGTCGGGGGATCGGTGGATGAGGAGGGGGAAGAGGG
TAGGAAAGGAGAGTCCGAGTACGAGAAATTAGGGCTGAGTCGCTTTTATG
GTACGACAACTGGTTCGTCGGTTTCTCTGTCGTCTATTTCCGTTCAAAGC
CTCAAAAGAGACACAAACGGAGAGGATTTCGAAGAGGAAAGAGGAGTGCG
GGTCAGGTGTATAGATTTATTCTTCCCACGCTCACGGGACAACCAGGTTT
TGTCCTTGAGTCAAACGTATGGAGTGGAAAGGAGGTGGAAAGGAGAAGAA
AGAGGCGATTTAAAAGGCTTTTTGAAATAGGAGCCGCGAGTATGTGTACA
TAAATTGTGTAGCGGTGCACAGACTCTATTCTTGACAAATGGACTTGTGA
AATAACATGGGTGAGGAATGGACATATGGATATAATGGACGCCTGCTGCT
CGTACCGAGATGGAAATGCAGAAGCCAGATGATAAAGAATGAATCAATCG
TTGTGAGTGATTAAGGGACAGCTGCAACAAATGTAGGCAAA
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protein sequence of NO25G01040.1

>NO25G01040.1-protein ID=NO25G01040.1-protein|Name=NO25G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MTTTRQRQAWAISLLFILLTPTEARVWGKVIHPPEVLAAVPEIHLQAQWL
HAHLEELPAITPALEPYWDNATVRPILEAVKRSSNPSYQIRKIDPQAIGW
HRVYKRRQKKTSKHDTLPLANATAEHQEEERPGGEEDESMFEYEYVDDES
ISFLESLWEEKRAAAAAAAATVRAEAAAAEDPSTLLGPYMVFLLTAFSSD
PFSLHLETLINQLAPAFPHVLFLKGDGQQDFSGLTSQIRVKGLPQLLIFE
ENLLRSRYKAKTKDLKSVLNFLVLHTGALPQAVVGKGRRGGGERRFVVRL
PRGAGGEREGMSVWGGMGWLYWISALYVLGEWSGDRWMRRGKRVGKESPS
TRN*
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Synonyms
Publications