NO25G01040.1, NO25G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01040.1
Unique NameNO25G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1676
Alignment locationchr25:289086..290926 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:289086..290926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01040.1 vs.
Match: EWM21632.1 (hypothetical protein Naga_100012g33 [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 7.200e-78
Identity = 169/328 (51.52%), Postives = 224/328 (68.29%), Query Frame = 0 
Query:   12 ISLLFILLTPT-EARVWGKVIHPPEVLAAVPEIHLQAQWLHAHLEELPAITPALEPYWDNATVRPILEAVKRSSNPSYQIRKIDPQAIGWHRVYKRRQKKTSKHDTLPLANATAEH----QEEERPGGEE--DESMFEYEYVDDESISFLESLWEEKRAAAAAAAATVRAEAAAAEDPSTLLGPYMVFLLTAFSSDPFSLHLETLINQLAPAFPHVLFLKGDGQQDFSGLTSQIRVKGLPQLLIFEENLLRSRYKAKTKDLKSVLNFLVLHTGALPQAVVGKGRRGGGERRFVVRLPRGAGGEREGMSVWGGMGWLYWISALYVLGEW 333
            +SL  +   P+ EARVW +V+HPP+ L AVPE+H +A WL  H  +LP +TPAL PYW+N T+RPIL A++RS+NP Y IR +DP  +GWHRVY+RRQ +  + D  P  +AT        EEE  GG E  DE MF  EYVDDES+S+L+ +WEE++  A A+    R    A  +PS L+GP+MV L+T+   DPFS HLE  + Q+APAFPHVLFLKG+G +DFSGL +QI VKGLPQ+L+FEENLLR R++   K ++++L+FLVLHTG LP+AVV     G  E + +VRLP         M    G+GW+Y +S ++VLGEW
Sbjct:  101 LSLFILFFCPSIEARVWARVVHPPKTLQAVPEVH-EAGWLRLHSNDLPNVTPALTPYWENVTIRPILSAIQRSANPWYTIRSLDPGTMGWHRVYRRRQ-RVPRRDLNPPPSATPPSTSYVSEEEEFGGPEGGDEGMF--EYVDDESLSYLQPVWEERKRGAVASLGGRR---GAEANPSLLIGPFMVLLITSSPFDPFSNHLEARVTQVAPAFPHVLFLKGEG-KDFSGLVAQISVKGLPQVLLFEENLLRGRFRG-VKTVRNLLSFLVLHTGCLPRAVV--TGNGEPEDKLMVRLP---------MVDEPGLGWIYALSVIWVLGEW 408
The following BLAST results are available for this feature:
BLAST of NO25G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21632.17.200e-7851.52hypothetical protein Naga_100012g33 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01040NO25G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01040.1NO25G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01040.1.cds1NO25G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01040.1.cds2NO25G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01040.1 ID=NO25G01040.1|Name=NO25G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
TCTTAAATCATCTATTCATCGCCCAAACCCAGAATTACATATAAACTGAG
TCGTCTTACAAGCTTTTCAGCAGACACATAAATGCACTCTGGTACACAGC
CCGAAGACAGAACTTGCCGAAGACCGCATCGTCAGCTAGTCCAGTCAACA
GTGGAATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCCTCCTG
TTCATCCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTCATCCA
TCCTCCTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGCCCAGT
GGCTGCACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCCTGGAG
CCCTATTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTCAAGCG
ATCTTCCAACCCCTCCTACCAAATTAGAAAAATTGACCCACAAGCTATCG
GTTGGCATCGCGTGTACAAACGTCGGCAAAAAAAGACGAGCAAGCACGAT
ACTCTCCCACTTGCAAACGCCACCGCTGAGCACCAAGAGGAAGAGAGGCC
GGGCGGGGAGGAAGACGAATCCATGTTTGAATATGAATACGTCGACGACG
AATCTATCTCTTTTCTAGAATCACTTTGGGAGGAAAAGAGGGCAGCAGCC
GCCGCCGCTGCCGCAACGGTTCGAGCAGAAGCAGCGGCAGCAGAAGATCC
CTCTACCCTGCTGGGGCCCTACATGGTCTTTCTCCTCACCGCCTTCTCCT
CCGATCCATTTTCTCTCCACCTGGAGACCCTCATCAACCAGTTAGCCCCC
GCATTCCCTCATGTCCTCTTCCTCAAGGGTGACGGTCAGCAAGATTTTTC
CGGGTTGACCTCCCAAATACGCGTCAAAGGGCTACCGCAGCTCCTCATAT
TCGAAGAAAATTTGTTAAGAAGTAGGTATAAGGCCAAAACCAAAGATTTA
AAATCCGTTTTGAACTTCTTGGTGTTGCATACGGGAGCATTGCCCCAGGC
TGTGGTAGGGAAGGGAAGGAGGGGAGGAGGCGAGCGAAGATTTGTGGTTA
GGTTGCCGAGGGGGGCGGGCGGAGAGAGGGAGGGAATGAGCGTTTGGGGG
GGGATGGGATGGTTATATTGGATTAGTGCTTTGTATGTGCTGGGGGAATG
GTCGGGGGATCGGTGGATGAGGAGGGGGAAGAGGGTAGGAAAGGAGAGTC
CGAGTACGAGAAATTAGGGCTGAGTCGCTTTTATGGTACGACAACTGGTT
CGTCGGTTTCTCTGTCGTCTATTTCCGTTCAAAGCCTCAAAAGAGACACA
AACGGAGAGGATTTCGAAGAGGAAAGAGGAGTGCGGGTCAGGTGTATAGA
TTTATTCTTCCCACGCTCACGGGACAACCAGGTTTTGTCCTTGAGTCAAA
CGTATGGAGTGGAAAGGAGGTGGAAAGGAGAAGAAAGAGGCGATTTAAAA
GGCTTTTTGAAATAGGAGCCGCGAGTATGTGTACATAAATTGTGTAGCGG
TGCACAGACTCTATTCTTGACAAATGGACTTGTGAAATAACATGGGTGAG
GAATGGACATATGGATATAATGGACGCCTGCTGCTCGTACCGAGATGGAA
ATGCAGAAGCCAGATGATAAAGAATGAATCAATCGTTGTGAGTGATTAAG
GGACAGCTGCAACAAATGTAGGCAAA
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protein sequence of NO25G01040.1

>NO25G01040.1-protein ID=NO25G01040.1-protein|Name=NO25G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MTTTRQRQAWAISLLFILLTPTEARVWGKVIHPPEVLAAVPEIHLQAQWL
HAHLEELPAITPALEPYWDNATVRPILEAVKRSSNPSYQIRKIDPQAIGW
HRVYKRRQKKTSKHDTLPLANATAEHQEEERPGGEEDESMFEYEYVDDES
ISFLESLWEEKRAAAAAAAATVRAEAAAAEDPSTLLGPYMVFLLTAFSSD
PFSLHLETLINQLAPAFPHVLFLKGDGQQDFSGLTSQIRVKGLPQLLIFE
ENLLRSRYKAKTKDLKSVLNFLVLHTGALPQAVVGKGRRGGGERRFVVRL
PRGAGGEREGMSVWGGMGWLYWISALYVLGEWSGDRWMRRGKRVGKESPS
TRN*
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mRNA from alignment at chr25:289086..290926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01040.1 ID=NO25G01040.1|Name=NO25G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp|location=Sequence derived from alignment at chr25:289086..290926+ (Nannochloropsis oceanica)
TCTTAAATCATCTATTCATCGCCCAAACCCAGAATTACATATAAACTGAG
TCGTCTTACAAGCTTTTCAGCAGACACATAAATGCACTCTGGTACACAGC
CCGAAGACAGAACTTGCCGAAGACCGCATCGTCAGCTAGTCCAGTCAACA
GTGGAATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCCTCCTG
TTCATCCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTCATCCA
TCCTCCTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGCCCAGT
GGCTGCACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCCTGGAG
CCCTATTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTCAAGCG
ATGTAAGTGTGTTGGGGAGATGACAGGGAGGAAGAGAGTGGGGGAAGCTC
TATTAATGCCAGGCCCCGTGTCTACAAATAAAGCATGCGCAAGAAAAAGC
TCAATATGCTTACGTACTCGTTCATTCACTTACACATCGCAAAATCCACG
CACACGCTCAACCACAGCTTCCAACCCCTCCTACCAAATTAGAAAAATTG
ACCCACAAGCTATCGGTTGGCATCGCGTGTACAAACGTCGGCAAAAAAAG
ACGAGCAAGCACGATACTCTCCCACTTGCAAACGCCACCGCTGAGCACCA
AGAGGAAGAGAGGCCGGGCGGGGAGGAAGACGAATCCATGTTTGAATATG
AATACGTCGACGACGAATCTATCTCTTTTCTAGAATCACTTTGGGAGGAA
AAGAGGGCAGCAGCCGCCGCCGCTGCCGCAACGGTTCGAGCAGAAGCAGC
GGCAGCAGAAGATCCCTCTACCCTGCTGGGGCCCTACATGGTCTTTCTCC
TCACCGCCTTCTCCTCCGATCCATTTTCTCTCCACCTGGAGACCCTCATC
AACCAGTTAGCCCCCGCATTCCCTCATGTCCTCTTCCTCAAGGGTGACGG
TCAGCAAGATTTTTCCGGGTTGACCTCCCAAATACGCGTCAAAGGGCTAC
CGCAGCTCCTCATATTCGAAGAAAATTTGTTAAGAAGTAGGTATAAGGCC
AAAACCAAAGATTTAAAATCCGTTTTGAACTTCTTGGTGTTGCATACGGG
AGCATTGCCCCAGGCTGTGGTAGGGAAGGGAAGGAGGGGAGGAGGCGAGC
GAAGATTTGTGGTTAGGTTGCCGAGGGGGGCGGGCGGAGAGAGGGAGGGA
ATGAGCGTTTGGGGGGGGATGGGATGGTTATATTGGATTAGTGCTTTGTA
TGTGCTGGGGGAATGGTCGGGGGATCGGTGGATGAGGAGGGGGAAGAGGG
TAGGAAAGGAGAGTCCGAGTACGAGAAATTAGGGCTGAGTCGCTTTTATG
GTACGACAACTGGTTCGTCGGTTTCTCTGTCGTCTATTTCCGTTCAAAGC
CTCAAAAGAGACACAAACGGAGAGGATTTCGAAGAGGAAAGAGGAGTGCG
GGTCAGGTGTATAGATTTATTCTTCCCACGCTCACGGGACAACCAGGTTT
TGTCCTTGAGTCAAACGTATGGAGTGGAAAGGAGGTGGAAAGGAGAAGAA
AGAGGCGATTTAAAAGGCTTTTTGAAATAGGAGCCGCGAGTATGTGTACA
TAAATTGTGTAGCGGTGCACAGACTCTATTCTTGACAAATGGACTTGTGA
AATAACATGGGTGAGGAATGGACATATGGATATAATGGACGCCTGCTGCT
CGTACCGAGATGGAAATGCAGAAGCCAGATGATAAAGAATGAATCAATCG
TTGTGAGTGATTAAGGGACAGCTGCAACAAATGTAGGCAAA
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Coding sequence (CDS) from alignment at chr25:289086..290926+

>NO25G01040.1 ID=NO25G01040.1|Name=NO25G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr25:289086..290926+ (Nannochloropsis oceanica)
ATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCCTCCTGTTCAT
CCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTCATCCATCCTC
CTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGCCCAGTGGCTG
CACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCCTGGAGCCCTA
TTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTCAAGCGATCTT
CCAACCCCTCCTACCAAATTAGAAAAATTGACCCACAAGCTATCGGTTGG
CATCGCGTGTACAAACGTCGGCAAAAAAAGACGAGCAAGCACGATACTCT
CCCACTTGCAAACGCCACCGCTGAGCACCAAGAGGAAGAGAGGCCGGGCG
GGGAGGAAGACGAATCCATGTTTGAATATGAATACGTCGACGACGAATCT
ATCTCTTTTCTAGAATCACTTTGGGAGGAAAAGAGGGCAGCAGCCGCCGC
CGCTGCCGCAACGGTTCGAGCAGAAGCAGCGGCAGCAGAAGATCCCTCTA
CCCTGCTGGGGCCCTACATGGTCTTTCTCCTCACCGCCTTCTCCTCCGAT
CCATTTTCTCTCCACCTGGAGACCCTCATCAACCAGTTAGCCCCCGCATT
CCCTCATGTCCTCTTCCTCAAGGGTGACGGTCAGCAAGATTTTTCCGGGT
TGACCTCCCAAATACGCGTCAAAGGGCTACCGCAGCTCCTCATATTCGAA
GAAAATTTGTTAAGAAGTAGGTATAAGGCCAAAACCAAAGATTTAAAATC
CGTTTTGAACTTCTTGGTGTTGCATACGGGAGCATTGCCCCAGGCTGTGG
TAGGGAAGGGAAGGAGGGGAGGAGGCGAGCGAAGATTTGTGGTTAGGTTG
CCGAGGGGGGCGGGCGGAGAGAGGGAGGGAATGAGCGTTTGGGGGGGGAT
GGGATGGTTATATTGGATTAGTGCTTTGTATGTGCTGGGGGAATGGTCGG
GGGATCGGTGGATGAGGAGGGGGAAGAGGGTAGGAAAGGAGAGTCCGAGT
ACGAGAAATTAG
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Synonyms
Publications