NO25G01030, NO25G01030 (gene) Nannochloropsis oceanica

Overview
NameNO25G01030
Unique NameNO25G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr25:286997..288698 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit I
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:286997..288698 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR027525eIF3i
IPR001680WD40_repeat
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Homology
BLAST of NO25G01030 vs. NCBI_GenBank
Match: EWM21585.1 (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 543.9 bits (1400), Expect = 3.500e-151
Identity = 309/337 (91.69%), Postives = 324/337 (96.14%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPEEY 338
            MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGG+RFATVCDPF  HNAK+QVFYAPEDAD ESLS   EVLIEIR REE+PTKVYW+QFNEDL+VAYE+GWVRKYDPKTGEER GEG+SAKLH+EKIN I WD  K+CFITASND+R+CLVDAKTL++LRVYQTDRPVNGAVISPIKDHVLLGGGQ+AQSVTTTRGQ GKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFM+DEVPEEY
Sbjct:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGERFATVCDPFVSHNAKIQVFYAPEDADPESLSPTPEVLIEIRNREEKPTKVYWTQFNEDLLVAYENGWVRKYDPKTGEERTGEGSSAKLHEEKINAITWDKQKICFITASNDYRSCLVDAKTLKVLRVYQTDRPVNGAVISPIKDHVLLGGGQEAQSVTTTRGQAGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMRDEVPEEY 337          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: GAX14322.1 (translation initiation factor 3 subunit I [Fistulifera solaris])

HSP 1 Score: 308.5 bits (789), Expect = 2.500e-80
Identity = 160/336 (47.62%), Postives = 205/336 (61.01%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIE---IRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEV 334
            MR  +++GHER IT V FN DGDLLF+A+ D  P+VW  E GERLGT                                            H GPVRG  WAEG   F T+ DPF  H AK+ VF APED D  + S    + IE   I  +  +PT V+W+  NEDL+VA+++G +R YDP+TG+ ++        H++KIN + ++  K  FIT+S D  + L D   L  L+ Y+TDRPVN AVIS  KDH+LLGGGQ+A SVTTT G++GKFETRFF+ +YE+EFG VKGHFGPI A+DI+P+G ++ SG+ DGYVRLHFFD DYL  KD V
Sbjct:    1 MRPYLLQGHERPITTVQFNHDGDLLFTASKDLVPSVWRVENGERLGTYNGHKGTVWDLDCDRFTKRLLTASADTSCRLWDVRTGECIFVFNHRGPVRGVAWAEGSQMFVTISDPFVDHPAKICVFDAPEDQDPSTYSETPRLEIELPKINGKVVKPTHVHWTALNEDLLVAFDNGQIRLYDPETGDLKE----EITAHEKKINRLRFNREKTLFITSSADFTSKLYDPVDLTHLKTYRTDRPVNDAVISEQKDHILLGGGQEAMSVTTTSGKVGKFETRFFNLVYEDEFGIVKGHFGPINALDINPNGRSYASGAEDGYVRLHFFDKDYLEKKDPV 332          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: GAX20004.1 (translation initiation factor 3 subunit I [Fistulifera solaris])

HSP 1 Score: 308.1 bits (788), Expect = 3.300e-80
Identity = 159/336 (47.32%), Postives = 206/336 (61.31%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIE---IRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEV 334
            MR  +++GHER IT V FN DGDLLF+A+ D  P+VW  E GERLGT                                            H GPVRG  WAEG   F T+ DPF  H AK+ VF APED D  + +    + IE   I  +  +PT V+W+  NEDL+VA+++G +R YDP+TG+ ++        H++KIN + ++  K  FIT+S D  + L D   L+ L+ Y+TDRPVN AVIS  KDH+LLGGGQ+A SVTTT G++GKFETRFF+ +YE+EFG VKGHFGPI A+DI+P+G ++ SG+ DGYVRLHFFD DYL  KD V
Sbjct:    1 MRPYLLQGHERPITTVQFNHDGDLLFTASKDLVPSVWRVENGERLGTYNGHKGTVWDLDCDRFTKRLLTASADTSCRLWDVRTGECIFVFNHKGPVRGVAWAEGSQMFVTISDPFVDHPAKICVFDAPEDQDPSTYTDPPRLEIELPKINGKVVKPTHVHWTALNEDLLVAFDNGQIRLYDPETGDLKE----EITAHEKKINRLRFNREKTLFITSSADFTSKLYDPVDLKHLKTYRTDRPVNDAVISEQKDHILLGGGQEAMSVTTTSGKVGKFETRFFNLVYEDEFGIVKGHFGPINALDINPNGRSYASGAEDGYVRLHFFDKDYLEKKDPV 332          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: XP_002183663.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44845.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 298.1 bits (762), Expect = 3.400e-77
Identity = 180/336 (53.57%), Postives = 227/336 (67.56%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPEE 337
            MR  +++GHER IT + FN DGDLLFSA+ D  P+VW  + GERLGT                   XXXXXXXXXXXXXXXXXXXXXXXXXH GPVRG  WAEG  +FAT+ DPF  HN+K++VF  PE+ D          L +I  +   PT + W+  NEDL+VA+++G +R YDP+TG+ ++      + HD+KIN + ++ +K  FIT+S D  + L D   L+ L+ Y+TDRPVN AVIS  KDH+L+GGGQDA SVTTT G++GKFETRFF+ +YE+EFG VKGHFGPI A        ++ SG+ DGYVRLH FD DYL MKD VPEE
Sbjct:    1 MRPYLLQGHERPITTIKFNYDGDLLFSASKDLVPSVWRADNGERLGTFNGHKGTVWDLDCDRFTTRXXXXXXXXXXXXXXXXXXXXXXXXXHRGPVRGVAWAEGSRKFATISDPFVEHNSKIRVFDCPENGDLTDDDVMEIDLPKIGGKRVNPTNIQWTGNNEDLLVAFDNGEIRLYDPETGDLKE----EIQAHDKKINRLRFNRDKTLFITSSADFTSKLFDPVDLKHLKTYRTDRPVNDAVISNKKDHILVGGGQDAMSVTTTSGKVGKFETRFFNMVYEDEFGSVKGHFGPINAC------RSYASGAEDGYVRLHLFDKDYLDMKDPVPEE 326          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: XP_002286220.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED95861.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 290.8 bits (743), Expect = 5.400e-75
Identity = 175/334 (52.40%), Postives = 222/334 (66.47%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREE----RPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMK 331
            MR +++KGHER+IT V FN DGDLLF+ + D  P+VW +E GERLGT                    XXXXXXXXXXXXXXXXXXXXXXXX  GPVRGA +A+G + FAT+ DPF  HNA++ V+  PE+ D  + S    + IE+    +      T + W   NE L V +++G +R YDP TGEE          H++KIN ++++ +K  FIT+S D  A L D   L  L+ Y+TDRPVN AVIS  KDH+LLGGGQ+A SVTTT G++GKFETRFFH +YEEEFG VKGHFGPI A+ I+P+G  + SG+ DGY+RLH+FD  YL MK
Sbjct:    1 MRPILLKGHERSITVVKFNHDGDLLFTGSKDHVPSVWRSENGERLGTFNGHKGTIWDLDVCRFSKRVXXXXXXXXXXXXXXXXXXXXXXXXXHGPVRGAAFADGSNMFATISDPFVEHNAQISVYDIPENDDPSTYSDTPRLEIELPKNSDGKRVNATNIVWLNLNEALFVTFDNGSIRLYDPVTGEELD----EFFPHEKKINRVSFNLDKTLFITSSADFTAKLYDVVDLRHLKTYKTDRPVNDAVISETKDHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGTVKGHFGPINAIAINPNGRCYASGAEDGYIRLHYFDKSYLDMK 330          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: OEU10880.1 (WD40 repeat-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 290.4 bits (742), Expect = 7.100e-75
Identity = 155/340 (45.59%), Postives = 199/340 (58.53%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEI-----RPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPE 336
            MR  +++GHER IT + +N DGDLLFSA+ D+ P +W  E GERLGT                                            H GPVRG  W+E   +FAT+ DPF  HNAK+ +F   E  D ES     E L+EI       R  + T + W+  NE L++A+++G VR Y+P TG   +      ++HD+KIN +  + +K  FIT+S D  + L D   L+ L+ Y TDRPVN AVIS  KDH+LLGGGQ+A SVTTT G++GKFETRFF  +YE EFG VKGHFGPI A+ I+P+G  + SG+ DGYVRLHFFD  YL MKD VPE
Sbjct:    1 MRPYLLQGHERPITVIKYNYDGDLLFSASKDQIPCIWRVENGERLGTFHGHKGTVWDLDCDRFSKQLLTASADATVKLWNIQSGDLQHTFTHRGPVRGVAWSEDNKKFATISDPFVEHNAKITIFDTAE-LDGESDEDDLEPLLEIDVPKENSRRVQMTNISWTALNEHLLIAFDNGIVRLYNPTTGTIEE----EIRVHDKKINRLQLNQSKSLFITSSADFTSKLYDTANLKHLKTYTTDRPVNDAVISETKDHILLGGGQEAMSVTTTSGKVGKFETRFFELVYETEFGSVKGHFGPINALAINPNGRNYASGAEDGYVRLHFFDKSYLDMKDPVPE 335          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: CCA18540.1 (eukaryotic translation initiation factor 3 subunit p [Albugo laibachii Nc14])

HSP 1 Score: 260.0 bits (663), Expect = 1.000e-65
Identity = 132/326 (40.49%), Postives = 188/326 (57.67%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDY 327
            MR +++KGH R+IT V +NR+GDLL S + D  P +W ++TGER+GT                                            H+GPVR  Q++ G   F +VCD F  H A + V+  P D +Q  L     + I       R T  YW   N+ ++ +   G ++ +DPK+G+  +      K+H   +  I+++  K   IT+S D+ A L+D +TL++L+ Y+TDRPVN A +SPI++HV+LGGGQ+A SVTTT GQ+GKFE RFFH +++EEF RVKGHFGPI  +   PDG ++VSG+ DGYVRLH FD+DY
Sbjct:    1 MRPILLKGHSRSITMVKYNREGDLLVSCSKDNAPNLWYSQTGERIGTYEGHTGSLWACDISYHSTYLLTASADSTVKLWDVSTGKCLFTFRHTGPVRSVQFSLGDRYFVSVCDKFVDHPATISVYALPNDINQ--LVDQPVLKITNHGFNGRITGAYWMPLNKSILASGGDGGLKVFDPKSGKVLK----ECKIHSGDVTNISFNKLKTLAITSSKDNTAKLLDVETLDVLKTYETDRPVNSAAMSPIREHVVLGGGQEAMSVTTTSGQVGKFEARFFHMVFQEEFARVKGHFGPINTIAFHPDGKSYVSGAEDGYVRLHHFDEDY 320          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: ETO77218.1 (hypothetical protein F444_07544 [Phytophthora parasitica P1976])

HSP 1 Score: 257.3 bits (656), Expect = 6.600e-65
Identity = 168/327 (51.38%), Postives = 223/327 (68.20%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYL 328
            MR +++KGH R++T + +NR+GDLLFS A D TP +W ++TGER+GT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    H+GP R   ++ G   F +V D F    A V V+   +D   +S      + I     E R T  YW   N+ ++     G ++ +DP TG+  +    S  +H  +I  + ++  K   IT+S D+ A L+D +TL++L+VY+TDRPVN A ISPIK+HV+LGGGQ+A SVTTT G++GKFE RFFH +++EEFGRVKGHFGPI  +   P+G ++ SG+ DGYVRLH FD+DYL
Sbjct:    1 MRPILLKGHSRSLTMIKYNREGDLLFSCAKDHTPNLWYSDTGERIGTYVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSFPHTGPARSVNFSTGDKYFVSVADKFSDRPAAVYVYELADDVANQSAEPV--LTITNHGHEGRITGAYWMPLNKAIMTTGGDGTIKLFDPTTGQLLE----SHDIHTGEITNVAFNKTKTLAITSSKDNTAKLLDIETLKVLKVYETDRPVNSAAISPIKEHVVLGGGQEAMSVTTTSGRVGKFEARFFHMVFQEEFGRVKGHFGPINTIAFHPNGKSYASGAEDGYVRLHHFDNDYL 321          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: XP_009538303.1 (hypothetical protein PHYSODRAFT_551045 [Phytophthora sojae] >EGZ06406.1 hypothetical protein PHYSODRAFT_551045 [Phytophthora sojae])

HSP 1 Score: 253.1 bits (645), Expect = 1.200e-63
Identity = 130/327 (39.76%), Postives = 182/327 (55.66%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYL 328
            MR +++KGH R++T + +NR+GDLLFS A D TP +W ++TGER+GT                                            H+GP R   +A G  +F +V D F    A V V+    D  Q+S      + I     E R T  YW+  NE ++     G ++ +DP+TGE  +    S  +H  +I  + ++  K   IT          D +T+++L+VY+TDRPVN A ISPIK+HV+LGGGQ+A SVTTT G++GKFE RFFH +++EEFGRVKGHFGPI  +   P+G ++ SG+ DGYVRLH FD+DYL
Sbjct:    1 MRPILLKGHSRSLTMIKYNREGDLLFSCAKDHTPNLWYSDTGERIGTYVGHSGAVWACDVSYHSERLLTAAADASVKLWDVQTGEELFSFQHTGPARSVNFATGDKKFVSVADKFSDRPAAVFVYELAADLAQQSAEPV--LTIANHGHEGRITGAYWTPLNEAIMTTGGDGCIKLFDPQTGELLE----SHDIHTGEITNVAFNKTKTLAITXXXXXXXXXXDVETMKVLKVYETDRPVNSAAISPIKEHVVLGGGQEAMSVTTTSGRVGKFEARFFHMVFQEEFGRVKGHFGPINTIAFHPNGKSYASGAEDGYVRLHHFDNDYL 321          
BLAST of NO25G01030 vs. NCBI_GenBank
Match: XP_008862518.1 (hypothetical protein H310_01239 [Aphanomyces invadans] >ETW08713.1 hypothetical protein H310_01239 [Aphanomyces invadans])

HSP 1 Score: 248.4 bits (633), Expect = 3.100e-62
Identity = 127/331 (38.37%), Postives = 185/331 (55.89%), Query Frame = 0
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKD 332
            M+ +++KGH R+IT +  NR+GDLL + A D  P++W +  GER+GT                                            H+G  R   ++ G   F +V D FG H   V V+   ++ +++  S+   + I     + R T  YW+  N+ +I   E G+V+ ++P+TG         AK+H+  I  + ++  K   IT+S D+ A L+D +T E+L+ Y+TDRPVN A ISPIK+HV+LGGGQ+A SVT T G+ GKFE RFFH ++EEEF RVKGHFGPI ++   PDG ++ SG+ DGYVR+H FD DYL  +D
Sbjct:    1 MQPILLKGHSRSITMIKHNREGDLLVTCAKDHVPSLWYSHNGERIGTFHGHTGAVWACDISYNSEFLLTAAADASVKLWDLQTGKELFSFTHTGSARSVNFSLGDKSFVSVADQFGDHPPTVFVYDLAQNGEKQ--SSQPRLAITKHGHQGRVTGAYWTSLNDGIITTGEDGYVKLFNPETG----ALITEAKVHNGVITNLAFNKTKTLGITSSKDNTAKLIDLETFEVLKTYETDRPVNSASISPIKEHVVLGGGQEAMSVTITAGRAGKFEARFFHQVFEEEFARVKGHFGPINSITFHPDGKSYTSGAEDGYVRIHHFDQDYLTRED 325          
The following BLAST results are available for this feature:
BLAST of NO25G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21585.13.500e-15191.69WD40-repeat-containing protein [Nannochloropsis ga... [more]
GAX14322.12.500e-8047.62translation initiation factor 3 subunit I [Fistuli... [more]
GAX20004.13.300e-8047.32translation initiation factor 3 subunit I [Fistuli... [more]
XP_002183663.13.400e-7753.57predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002286220.15.400e-7552.40predicted protein, partial [Thalassiosira pseudona... [more]
OEU10880.17.100e-7545.59WD40 repeat-like protein [Fragilariopsis cylindrus... [more]
CCA18540.11.000e-6540.49eukaryotic translation initiation factor 3 subunit... [more]
ETO77218.16.600e-6551.38hypothetical protein F444_07544 [Phytophthora para... [more]
XP_009538303.11.200e-6339.76hypothetical protein PHYSODRAFT_551045 [Phytophtho... [more]
XP_008862518.13.100e-6238.37hypothetical protein H310_01239 [Aphanomyces invad... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004326NSK004326Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01030.1NO25G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603255gene_8588Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g34gene8808Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01030.1NO25G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01030 ID=NO25G01030|Name=NO25G01030|organism=Nannochloropsis oceanica|type=gene|length=1702bp
ATGgtacgttctcactccctgctcccctgcctcatcgaccttctcgctga
cccgtacgcccgtaccaaacaaatacacaacaatgttgacagCGCGTCAT
GGTGATGAAAGGCCACGAGCGGAACATTACGCGCGTGCTCTTCAACCGGG
ATGGGGACTTACTTTTCTCAGCAGCCAGCGACAAAACCCCCACGGTCTGG
GACACAGAGACGGGCGAGCGCCTAGgtaatgatggactcgacgtcattct
ccttttccacatattttccttcggtctgttatctgtgttccttcttcgca
ggacagcatttatcgctaggcaggctttgtgctgtctttctgacaacgtg
acaagtgctcaagatgctcccacccctcccaccctccctccgtctcttcc
tccccagGCACCTACAACGGCCACTCCGGCTCCATCACTGATATGTCCGT
CTCGTGGAACAGCAAGCGCCTCGTCACGGCTTCTGGTGACTGCCAAGTCA
AGCTGTGGGACGTTCAAACAGGAGAAGAGCTCCTGACTTACACCCATTCC
GGGCCTGTGCGCGGGGCGCAGTGGGCCGAGGGAGGGGACCGATTCGCGAC
AGTCTGTGACCCTTTTGGACCTCATAATGCCAAGGTGCAGGTATTCTATG
CCCCTGAGGACGCCGACCAGGAGAGTTTGAGCACGGCCTCGGAGGTGCTG
ATTGAGATTAGACCACGGGAGGAGAGGCCGACGAAGgtatgtctatgaat
aaatacatcgaagatgttgattaccgacaagttttcaaatatttttcacc
ccctttctgcattttctccctccgccccggactctttctctctctccttt
ttcgactagcatatactgaccgcaatgaagggtagaattcaccgtagcat
ctgatgcacaggacaaagaacatgtcgaaaaacacaaacattcacatctt
cctccccccttccctctctccttccctctctccttccctctctccttccc
tccccctgcttacccagGTGTACTGGTCGCAGTTCAACGAGGATCTCATC
GTGGCCTATGAGAGTGGGTGGGTTCGGAAATATGACCCCAAGACTGGGGA
GGAACGGCAAGGAGAAGGGGCAAGCGCCAAGCTGCATGACGAGAAGATCA
ACATGATTAATTGGGATGCGAATAAAgtagggaaagatggggagggaggg
agggaggaatggagggctttcgaaaagaaatcgttctcatagatttgtac
atgtgcactacatgtttcgaccctctgacgtacaatcttccttcccccct
ccctcccttcagGTGTGTTTCATCACAGCCTCCAATGACCACCGTGCATG
TCTGGTGGACGCCAAGACGTTAGAAATCCTACGAGTGTACCAAACGGACC
GGCCAGTCAACGGCGCCGTTATTTCCCCGATCAAGGACCATGTCTTGCTA
GGGGGAGGACAGGATGCCCAGAGCGTCACCACCACTCGCGGTCAAATGGG
GAAGTTCGAAACACGGTTTTTCCATTCAATCTACGAGGAGGAGTTTGGGA
GGGTGAAGGGACATTTCGGCCCCATTACCGCGGTCGATATCAGTCCAGAT
GGTCTGGCGTTCGTGAGTGGGTCGTTTGATGGCTATGTCCGCTTGCATTT
CTTTGACGATGATTACTTGTTTATGAAGGATGAGGTCCCTGAAGAGTATT
AG
back to top

protein sequence of NO25G01030.1

>NO25G01030.1-protein ID=NO25G01030.1-protein|Name=NO25G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNG
HSGSITDMSVSWNSKRLVTASGDCQVKLWDVQTGEELLTYTHSGPVRGAQ
WAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPRE
ERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKIN
MINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKD
HVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVD
ISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPEEY*
back to top
Synonyms
Publications