NO25G01030.1, NO25G01030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01030.1
Unique NameNO25G01030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr25:286997..288698 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:286997..288698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01030.1 vs.
Match: EWM21585.1 (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 648.3 bits (1671), Expect = 1.300e-182
Identity = 307/337 (91.10%), Postives = 322/337 (95.55%), Query Frame = 0 
Query:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNGHSGSITDMSVSWNSKRLVTASGDCQVKLWDVQTGEELLTYTHSGPVRGAQWAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPREERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKINMINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKDHVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPEEY 338
            MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNGHSGSITDMSVSWNS RLVTASGDCQVKLW VQTGEELLTYTHSGPVRGAQWAEGG+RFATVCDPF  HNAK+QVFYAPEDAD ESLS   EVLIEIR REE+PTKVYW+QFNEDL+VAYE+GWVRKYDPKTGEER GEG+SAKLH+EKIN I WD  K+CFITASND+R+CLVDAKTL++LRVYQTDRPVNGAVISPIKDHVLLGGGQ+AQSVTTTRGQ GKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFM+DEVPEEY
Sbjct:    1 MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNGHSGSITDMSVSWNSNRLVTASGDCQVKLWKVQTGEELLTYTHSGPVRGAQWAEGGERFATVCDPFVSHNAKIQVFYAPEDADPESLSPTPEVLIEIRNREEKPTKVYWTQFNEDLLVAYENGWVRKYDPKTGEERTGEGSSAKLHEEKINAITWDKQKICFITASNDYRSCLVDAKTLKVLRVYQTDRPVNGAVISPIKDHVLLGGGQEAQSVTTTRGQAGKFETRFFHSIYEEEFGRVKGHFGPITAVDISPDGLAFVSGSFDGYVRLHFFDDDYLFMRDEVPEEY 337
The following BLAST results are available for this feature:
BLAST of NO25G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21585.11.300e-18291.10WD40-repeat-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01030NO25G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01030.1NO25G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01030.1.cds1NO25G01030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01030.1.cds2NO25G01030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01030.1.cds3NO25G01030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01030.1.cds4NO25G01030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01030.1.cds5NO25G01030.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01030.1 ID=NO25G01030.1|Name=NO25G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
ATGCGCGTCATGGTGATGAAAGGCCACGAGCGGAACATTACGCGCGTGCT
CTTCAACCGGGATGGGGACTTACTTTTCTCAGCAGCCAGCGACAAAACCC
CCACGGTCTGGGACACAGAGACGGGCGAGCGCCTAGGCACCTACAACGGC
CACTCCGGCTCCATCACTGATATGTCCGTCTCGTGGAACAGCAAGCGCCT
CGTCACGGCTTCTGGTGACTGCCAAGTCAAGCTGTGGGACGTTCAAACAG
GAGAAGAGCTCCTGACTTACACCCATTCCGGGCCTGTGCGCGGGGCGCAG
TGGGCCGAGGGAGGGGACCGATTCGCGACAGTCTGTGACCCTTTTGGACC
TCATAATGCCAAGGTGCAGGTATTCTATGCCCCTGAGGACGCCGACCAGG
AGAGTTTGAGCACGGCCTCGGAGGTGCTGATTGAGATTAGACCACGGGAG
GAGAGGCCGACGAAGGTGTACTGGTCGCAGTTCAACGAGGATCTCATCGT
GGCCTATGAGAGTGGGTGGGTTCGGAAATATGACCCCAAGACTGGGGAGG
AACGGCAAGGAGAAGGGGCAAGCGCCAAGCTGCATGACGAGAAGATCAAC
ATGATTAATTGGGATGCGAATAAAGTGTGTTTCATCACAGCCTCCAATGA
CCACCGTGCATGTCTGGTGGACGCCAAGACGTTAGAAATCCTACGAGTGT
ACCAAACGGACCGGCCAGTCAACGGCGCCGTTATTTCCCCGATCAAGGAC
CATGTCTTGCTAGGGGGAGGACAGGATGCCCAGAGCGTCACCACCACTCG
CGGTCAAATGGGGAAGTTCGAAACACGGTTTTTCCATTCAATCTACGAGG
AGGAGTTTGGGAGGGTGAAGGGACATTTCGGCCCCATTACCGCGGTCGAT
ATCAGTCCAGATGGTCTGGCGTTCGTGAGTGGGTCGTTTGATGGCTATGT
CCGCTTGCATTTCTTTGACGATGATTACTTGTTTATGAAGGATGAGGTCC
CTGAAGAGTATTAG
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protein sequence of NO25G01030.1

>NO25G01030.1-protein ID=NO25G01030.1-protein|Name=NO25G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNG
HSGSITDMSVSWNSKRLVTASGDCQVKLWDVQTGEELLTYTHSGPVRGAQ
WAEGGDRFATVCDPFGPHNAKVQVFYAPEDADQESLSTASEVLIEIRPRE
ERPTKVYWSQFNEDLIVAYESGWVRKYDPKTGEERQGEGASAKLHDEKIN
MINWDANKVCFITASNDHRACLVDAKTLEILRVYQTDRPVNGAVISPIKD
HVLLGGGQDAQSVTTTRGQMGKFETRFFHSIYEEEFGRVKGHFGPITAVD
ISPDGLAFVSGSFDGYVRLHFFDDDYLFMKDEVPEEY*
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mRNA from alignment at chr25:286997..288698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01030.1 ID=NO25G01030.1|Name=NO25G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at chr25:286997..288698- (Nannochloropsis oceanica)
ATGGTACGTTCTCACTCCCTGCTCCCCTGCCTCATCGACCTTCTCGCTGA
CCCGTACGCCCGTACCAAACAAATACACAACAATGTTGACAGCGCGTCAT
GGTGATGAAAGGCCACGAGCGGAACATTACGCGCGTGCTCTTCAACCGGG
ATGGGGACTTACTTTTCTCAGCAGCCAGCGACAAAACCCCCACGGTCTGG
GACACAGAGACGGGCGAGCGCCTAGGTAATGATGGACTCGACGTCATTCT
CCTTTTCCACATATTTTCCTTCGGTCTGTTATCTGTGTTCCTTCTTCGCA
GGACAGCATTTATCGCTAGGCAGGCTTTGTGCTGTCTTTCTGACAACGTG
ACAAGTGCTCAAGATGCTCCCACCCCTCCCACCCTCCCTCCGTCTCTTCC
TCCCCAGGCACCTACAACGGCCACTCCGGCTCCATCACTGATATGTCCGT
CTCGTGGAACAGCAAGCGCCTCGTCACGGCTTCTGGTGACTGCCAAGTCA
AGCTGTGGGACGTTCAAACAGGAGAAGAGCTCCTGACTTACACCCATTCC
GGGCCTGTGCGCGGGGCGCAGTGGGCCGAGGGAGGGGACCGATTCGCGAC
AGTCTGTGACCCTTTTGGACCTCATAATGCCAAGGTGCAGGTATTCTATG
CCCCTGAGGACGCCGACCAGGAGAGTTTGAGCACGGCCTCGGAGGTGCTG
ATTGAGATTAGACCACGGGAGGAGAGGCCGACGAAGGTATGTCTATGAAT
AAATACATCGAAGATGTTGATTACCGACAAGTTTTCAAATATTTTTCACC
CCCTTTCTGCATTTTCTCCCTCCGCCCCGGACTCTTTCTCTCTCTCCTTT
TTCGACTAGCATATACTGACCGCAATGAAGGGTAGAATTCACCGTAGCAT
CTGATGCACAGGACAAAGAACATGTCGAAAAACACAAACATTCACATCTT
CCTCCCCCCTTCCCTCTCTCCTTCCCTCTCTCCTTCCCTCTCTCCTTCCC
TCCCCCTGCTTACCCAGGTGTACTGGTCGCAGTTCAACGAGGATCTCATC
GTGGCCTATGAGAGTGGGTGGGTTCGGAAATATGACCCCAAGACTGGGGA
GGAACGGCAAGGAGAAGGGGCAAGCGCCAAGCTGCATGACGAGAAGATCA
ACATGATTAATTGGGATGCGAATAAAGTAGGGAAAGATGGGGAGGGAGGG
AGGGAGGAATGGAGGGCTTTCGAAAAGAAATCGTTCTCATAGATTTGTAC
ATGTGCACTACATGTTTCGACCCTCTGACGTACAATCTTCCTTCCCCCCT
CCCTCCCTTCAGGTGTGTTTCATCACAGCCTCCAATGACCACCGTGCATG
TCTGGTGGACGCCAAGACGTTAGAAATCCTACGAGTGTACCAAACGGACC
GGCCAGTCAACGGCGCCGTTATTTCCCCGATCAAGGACCATGTCTTGCTA
GGGGGAGGACAGGATGCCCAGAGCGTCACCACCACTCGCGGTCAAATGGG
GAAGTTCGAAACACGGTTTTTCCATTCAATCTACGAGGAGGAGTTTGGGA
GGGTGAAGGGACATTTCGGCCCCATTACCGCGGTCGATATCAGTCCAGAT
GGTCTGGCGTTCGTGAGTGGGTCGTTTGATGGCTATGTCCGCTTGCATTT
CTTTGACGATGATTACTTGTTTATGAAGGATGAGGTCCCTGAAGAGTATT
AG
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Coding sequence (CDS) from alignment at chr25:286997..288698-

>NO25G01030.1 ID=NO25G01030.1|Name=NO25G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr25:286997..288698- (Nannochloropsis oceanica)
ATGCGCGTCATGGTGATGAAAGGCCACGAGCGGAACATTACGCGCGTGCT
CTTCAACCGGGATGGGGACTTACTTTTCTCAGCAGCCAGCGACAAAACCC
CCACGGTCTGGGACACAGAGACGGGCGAGCGCCTAGGCACCTACAACGGC
CACTCCGGCTCCATCACTGATATGTCCGTCTCGTGGAACAGCAAGCGCCT
CGTCACGGCTTCTGGTGACTGCCAAGTCAAGCTGTGGGACGTTCAAACAG
GAGAAGAGCTCCTGACTTACACCCATTCCGGGCCTGTGCGCGGGGCGCAG
TGGGCCGAGGGAGGGGACCGATTCGCGACAGTCTGTGACCCTTTTGGACC
TCATAATGCCAAGGTGCAGGTATTCTATGCCCCTGAGGACGCCGACCAGG
AGAGTTTGAGCACGGCCTCGGAGGTGCTGATTGAGATTAGACCACGGGAG
GAGAGGCCGACGAAGGTGTACTGGTCGCAGTTCAACGAGGATCTCATCGT
GGCCTATGAGAGTGGGTGGGTTCGGAAATATGACCCCAAGACTGGGGAGG
AACGGCAAGGAGAAGGGGCAAGCGCCAAGCTGCATGACGAGAAGATCAAC
ATGATTAATTGGGATGCGAATAAAGTGTGTTTCATCACAGCCTCCAATGA
CCACCGTGCATGTCTGGTGGACGCCAAGACGTTAGAAATCCTACGAGTGT
ACCAAACGGACCGGCCAGTCAACGGCGCCGTTATTTCCCCGATCAAGGAC
CATGTCTTGCTAGGGGGAGGACAGGATGCCCAGAGCGTCACCACCACTCG
CGGTCAAATGGGGAAGTTCGAAACACGGTTTTTCCATTCAATCTACGAGG
AGGAGTTTGGGAGGGTGAAGGGACATTTCGGCCCCATTACCGCGGTCGAT
ATCAGTCCAGATGGTCTGGCGTTCGTGAGTGGGTCGTTTGATGGCTATGT
CCGCTTGCATTTCTTTGACGATGATTACTTGTTTATGAAGGATGAGGTCC
CTGAAGAGTATTAG
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Synonyms
Publications