NO25G00880, NO25G00880 (gene) Nannochloropsis oceanica

Overview
NameNO25G00880
Unique NameNO25G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2576
Alignment locationchr25:247480..250055 -

Link to JBrowse

Properties
Property NameValue
DescriptionSplicing factor u2af large subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:247480..250055 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO25G00880 vs. NCBI_GenBank
Match: EWM21646.1 (splicing factor u2af large subunit [Nannochloropsis gaditana])

HSP 1 Score: 684.1 bits (1764), Expect = 4.300e-193
Identity = 355/445 (79.78%), Postives = 372/445 (83.60%), Query Frame = 0
Query:  225 NWDKPPEAVPGLVTGLPAXXXXXXXXXXXXXXXXXXXXXXXXXXQFLDPPMLDPSVMMGTSVLGPGGVVRGAIGTLTAPTAPPNQQELFNGVLVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAA--TAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEYAAGN 668
            NWDKPPE   GL  G  A                          QF+DPPMLDP VMMGT+ LG GGVVRGAIGTLTAPTAPPNQQELFNGV+VPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSA+APPIVGVQVNE+KPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGI+DPPTG SLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFG LKAFNLVKDPA+GTSKGFCFFEYLDH+LTD+VC+ELNGFELG+RKLICQRANPSPA AAA   AAL G   +HPYAALLTG                    KVLKLSNMVV EEL+DD+EYEEIVMDIKEECGKYG VVSLKVPRP+YKEDGSVDVSPPGVGEVFVEF +E GA KAGNALRNRQFSGRTVVC FVKEE+YA GN
Sbjct:  167 NWDKPPE---GLTVGQGA-------VTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAG-GSMHPYAALLTG--------SSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGN 592          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: ELU16702.1 (hypothetical protein CAPTEDRAFT_155651 [Capitella teleta])

HSP 1 Score: 273.9 bits (699), Expect = 1.400e-69
Identity = 162/396 (40.91%), Postives = 233/396 (58.84%), Query Frame = 0
Query:  274 PMLDPSVMMGTSVLGPGGVVRGAIGTLTAPTAPPNQQELFNGVLVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAA------LGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            P++ P+     +V  P  +  GA G + APT  P     F G    + + RQA+RLYVGN+P G  + ++M  FN  M  A    A   P++  QVN  K FAFLE R+ ++  + +  DGI      LK+RRPKD++PLPGI + P     +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAF+LVKD A G SKG+ F EYLD S+TDQ C+ LNG +LGD+KLI QRA+    +AA  ++      + G+A ++P AA                        +VL L NMV+ EEL+D+ EYE+I+ D+KEEC KYG V SL++PRP         V  PGVG++FVEF     + KA NAL  R+F+ RTV+  +   ++Y
Sbjct:  119 PLMGPTPTAAAAVPAPPPLA-GAPG-IVAPTNIP-----FAG----SAISRQARRLYVGNIPFGVTEEMMMDFFNTQMKMAALSQAEGNPVIACQVNLDKNFAFLEYRSVDETTHAMALDGINFQGQSLKIRRPKDYQPLPGIAETP--NVAVPGVVSTVVQDSAHKIFIGGLPNYLNEDQVKELLTSFGPLKAFSLVKDSATGLSKGYAFCEYLDISITDQACAGLNGMQLGDKKLIVQRASVGAKNAAIISSAPMQMQIPGLA-VNPMAA-------------------AGPATEVLCLMNMVLPEELEDEEEYEDILEDVKEECSKYGFVKSLEIPRPI------KGVEVPGVGKIFVEFHSITDSQKAQNALSGRKFANRTVITSYCDPDKY 475          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: OWF52954.1 (Splicing factor U2AF 50 kDa subunit [Mizuhopecten yessoensis])

HSP 1 Score: 272.7 bits (696), Expect = 3.000e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + PT    +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAFNLVKD A G SKG+ F EY+D ++TDQ C+ LNG +LGD+KLI QRA+    +A A   L  + GL+                            +VL L NMV  EEL+D+ EYE+I+ D+KEECGKYG V S++VPRP         V  PG G++FVEF       KA  AL  R+FS R VV  +   ++Y
Sbjct:   40 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPTVN--VPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVTITDQACAGLNGMQLGDKKLIVQRASVGAKNAQAPVQL-QIPGLN-------------------MTQGSGPATEVLCLMNMVAPEELEDEEEYEDILEDVKEECGKYGIVRSIEVPRPI------KGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSNRVVVTSYFDPDQY 351          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_021348199.1 (splicing factor U2AF 50 kDa subunit-like isoform X1 [Mizuhopecten yessoensis])

HSP 1 Score: 272.7 bits (696), Expect = 3.000e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + PT    +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAFNLVKD A G SKG+ F EY+D ++TDQ C+ LNG +LGD+KLI QRA+    +A A   L  + GL+                            +VL L NMV  EEL+D+ EYE+I+ D+KEECGKYG V S++VPRP         V  PG G++FVEF       KA  AL  R+FS R VV  +   ++Y
Sbjct:  143 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPTVN--VPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVTITDQACAGLNGMQLGDKKLIVQRASVGAKNAQAPVQL-QIPGLN-------------------MTQGSGPATEVLCLMNMVAPEELEDEEEYEDILEDVKEECGKYGIVRSIEVPRPI------KGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSNRVVVTSYFDPDQY 454          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_021348200.1 (splicing factor U2AF 50 kDa subunit-like isoform X2 [Mizuhopecten yessoensis])

HSP 1 Score: 272.7 bits (696), Expect = 3.000e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + PT    +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAFNLVKD A G SKG+ F EY+D ++TDQ C+ LNG +LGD+KLI QRA+    +A A   L  + GL+                            +VL L NMV  EEL+D+ EYE+I+ D+KEECGKYG V S++VPRP         V  PG G++FVEF       KA  AL  R+FS R VV  +   ++Y
Sbjct:  141 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPTVN--VPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVTITDQACAGLNGMQLGDKKLIVQRASVGAKNAQAPVQL-QIPGLN-------------------MTQGSGPATEVLCLMNMVAPEELEDEEEYEDILEDVKEECGKYGIVRSIEVPRPI------KGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSNRVVVTSYFDPDQY 452          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_021348201.1 (splicing factor U2AF 50 kDa subunit-like isoform X3 [Mizuhopecten yessoensis])

HSP 1 Score: 272.7 bits (696), Expect = 3.000e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + PT    +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAFNLVKD A G SKG+ F EY+D ++TDQ C+ LNG +LGD+KLI QRA+    +A A   L  + GL+                            +VL L NMV  EEL+D+ EYE+I+ D+KEECGKYG V S++VPRP         V  PG G++FVEF       KA  AL  R+FS R VV  +   ++Y
Sbjct:  130 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPTVN--VPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVTITDQACAGLNGMQLGDKKLIVQRASVGAKNAQAPVQL-QIPGLN-------------------MTQGSGPATEVLCLMNMVAPEELEDEEEYEDILEDVKEECGKYGIVRSIEVPRPI------KGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSNRVVVTSYFDPDQY 441          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_021348202.1 (splicing factor U2AF 50 kDa subunit-like isoform X4 [Mizuhopecten yessoensis])

HSP 1 Score: 272.7 bits (696), Expect = 3.000e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + PT    +PG + T V+++ +KI++G +P + N+ QV+EL+++FG LKAFNLVKD A G SKG+ F EY+D ++TDQ C+ LNG +LGD+KLI QRA+    +A A   L  + GL+                            +VL L NMV  EEL+D+ EYE+I+ D+KEECGKYG V S++VPRP         V  PG G++FVEF       KA  AL  R+FS R VV  +   ++Y
Sbjct:  128 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPTVN--VPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVTITDQACAGLNGMQLGDKKLIVQRASVGAKNAQAPVQL-QIPGLN-------------------MTQGSGPATEVLCLMNMVAPEELEDEEEYEDILEDVKEECGKYGIVRSIEVPRPI------KGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSNRVVVTSYFDPDQY 439          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_002130386.1 (PREDICTED: splicing factor U2AF 50 kDa subunit [Ciona intestinalis])

HSP 1 Score: 272.3 bits (695), Expect = 3.900e-69
Identity = 151/344 (43.90%), Postives = 202/344 (58.72%), Query Frame = 0
Query:  320 TMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            + M RQA+RLYVGN+P G  +  +M  FN  M  AG   A   PI+ VQ+N  K FAFLE R+ ++    L FDGI      LK+RRP D+KPLPG ++ P     +PG + T V+++++K+++G +P + ND QV+EL+++FG L+AFNLVKD A   SKG+ F E+ D+SLTDQ  + LNG +LGD+KLI QRA+    +    A +  V    P  A  TG                     VL L NMV+ EEL DD EYEEI+ D+K+ECGK G+VVSL++PRP     G       GVG+++VEF       KA  AL  R+FS R VV  F   E Y
Sbjct:  155 SQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSDYKPLPGSLEQP--AIHLPGVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRASIGAKNNPHGAIMAPVTLQIPGMAHATG---------------AGPATTVLCLMNMVLPEELTDDEEYEEIMEDVKDECGKLGSVVSLEIPRP-----GPGLTEADGVGKIYVEFANHLDTQKAAQALSGRKFSNRVVVTSFFDPERY 476          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_023931364.1 (splicing factor U2AF 50 kDa subunit isoform X2 [Lingula anatina])

HSP 1 Score: 271.9 bits (694), Expect = 5.100e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + P  +  +PG + T V+++ +KI++G +P + N+ QV+EL+ +FG LKAFNLVKD A G SKG+ F EYLD ++TDQ C+ LNG +LGD+KLI QRA+    +A        V GL+                            +VL L NMVV EEL+D+ EYEEI+ D++EECGKYG V S+++PRP       VDV  PG G++FVEF       KA  AL  R+F+ R VV  +   ++Y
Sbjct:  128 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMSETP--SMAVPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLMSFGPLKAFNLVKDSATGLSKGYAFCEYLDPNITDQACAGLNGMQLGDKKLIVQRASVGAKNAQNAPVPIQVPGLN-------------------LNQGSGPPTEVLCLMNMVVPEELEDEEEYEEILEDVREECGKYGIVRSMEIPRPI----KGVDV--PGCGKIFVEFNSVIDCQKAQQALTGRKFANRVVVTSYYDPDQY 440          
BLAST of NO25G00880 vs. NCBI_GenBank
Match: XP_023931365.1 (splicing factor U2AF 50 kDa subunit isoform X4 [Lingula anatina])

HSP 1 Score: 271.9 bits (694), Expect = 5.100e-69
Identity = 146/340 (42.94%), Postives = 203/340 (59.71%), Query Frame = 0
Query:  324 RQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGXXXXXXXXXXXXXXXXXXXXKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEY 664
            RQA+RLYVGN+P G  +  +M  FN  M   G   A   P++ VQ+N  K FAFLE R+ ++    + FDGI      LK+RRP+D++PLPG+ + P  +  +PG + T V+++ +KI++G +P + N+ QV+EL+ +FG LKAFNLVKD A G SKG+ F EYLD ++TDQ C+ LNG +LGD+KLI QRA+    +A        V GL+                            +VL L NMVV EEL+D+ EYEEI+ D++EECGKYG V S+++PRP       VDV  PG G++FVEF       KA  AL  R+F+ R VV  +   ++Y
Sbjct:  122 RQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQADGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMSETP--SMAVPGVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLMSFGPLKAFNLVKDSATGLSKGYAFCEYLDPNITDQACAGLNGMQLGDKKLIVQRASVGAKNAQNAPVPIQVPGLN-------------------LNQGSGPPTEVLCLMNMVVPEELEDEEEYEEILEDVREECGKYGIVRSMEIPRPI----KGVDV--PGCGKIFVEFNSVIDCQKAQQALTGRKFANRVVVTSYYDPDQY 434          
The following BLAST results are available for this feature:
BLAST of NO25G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21646.14.300e-19379.78splicing factor u2af large subunit [Nannochloropsi... [more]
ELU16702.11.400e-6940.91hypothetical protein CAPTEDRAFT_155651 [Capitella ... [more]
OWF52954.13.000e-6942.94Splicing factor U2AF 50 kDa subunit [Mizuhopecten ... [more]
XP_021348199.13.000e-6942.94splicing factor U2AF 50 kDa subunit-like isoform X... [more]
XP_021348200.13.000e-6942.94splicing factor U2AF 50 kDa subunit-like isoform X... [more]
XP_021348201.13.000e-6942.94splicing factor U2AF 50 kDa subunit-like isoform X... [more]
XP_021348202.13.000e-6942.94splicing factor U2AF 50 kDa subunit-like isoform X... [more]
XP_002130386.13.900e-6943.90PREDICTED: splicing factor U2AF 50 kDa subunit [Ci... [more]
XP_023931364.15.100e-6942.94splicing factor U2AF 50 kDa subunit isoform X2 [Li... [more]
XP_023931365.15.100e-6942.94splicing factor U2AF 50 kDa subunit isoform X4 [Li... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004339NSK004339Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00880.1NO25G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546448gene_8575Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g48gene8821Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00880.1NO25G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00880 ID=NO25G00880|Name=NO25G00880|organism=Nannochloropsis oceanica|type=gene|length=2576bp
GTCGTGGCCATGCGTCTATGCCTAAGGCTACTTTCTTTGCTTCCGTGAAG
ACCCAGACGTCTAGTTCATGCCTTTGAGTGCGAGATTTATTTCTAGTCCG
CTCGTTACAAGTCGTAACGCTTGCGGGGCGGGGGGGAGAAACCTAAGTGC
TCGATGGGGTGATGATACGTCCACTTTGTTCTTCGTCCTTGGCCTTCCTC
TCGACAAGCATTCACATTCTCTTCCCATTTCTCTCCCTCCCCACCCTCAC
AAACACTACACAGACGAAATGTCGGGCCCGGAAGATGATGCGCCCAAGGC
GCCTGCGGCTGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCG
AGGGAGGAGAGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAAC
GGCGCAGGTGGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATC
GACCAAGAGGGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACA
AGCGCAGCAAGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGC
AGCAGCCGTGGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAG
CCCGCGGGGGGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTG
GCAGTCGTCGCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCC
TCTTCGTCTCGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAA
GCCACCTGAGGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAG
GATTGACAGGACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGT
GGCACTGCCGGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCC
GAGCGTAATGATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGG
GCGCCATCGGGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAA
CTCTTCAACGGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCG
CCTGTACGTCGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGC
AACTCTTCAACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCC
CCTCCCATCGTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCT
CGAAACCCGCACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCA
TCACCATAGGCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAA
CCGCTTCCGGGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGG
ACACCTCCCTACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCT
CGATCCCCACCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCC
TTCGGCGAGCTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGAC
CAGCAAAGGCTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACC
AAGTGTGTTCGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATC
TGTCAACGGGCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACT
TGGCGGCGTCGCTGGCCTCCATCCGTACGCTGCTCTCCTCACTGGTCAAG
CAGGAGGAGGAAGCGGAGGAGGAGGAGCGGTGCAGCCACCCCTTGGCCCA
CCTACGAAGGTATTAAAATTGAGCAATATGGTGGTGGAGGAGGAATTGAA
GGATGACTCAGAGTACGAAGAAATCGTGATGGACATCAAGGAAGAGTGTG
GGAAATACGGTAATGTGGTATCGCTGAAGGTGCCGAGGCCTACATACAAG
GAGGACGGGAGCGTGGACGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGT
GGAGTTCGAGGAGGAGGCAGGGGCCATGAAGGCGGGGAACGCGCTGAGGA
ACAGACAATTCTCGGGGCGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAG
GAGTATGCGGCTGGAAATTATTAGGGGGCATGGGGGAGGAAGGAGAGGGA
GGGTAGAAGAGCAGGAGGAGGAGAGATGGGAGGAAAGGAGGAGGAAGGAG
GAGGAGAAACGGAGGGGACAATGGAGGGAGGTGGTCACTACGATATAGCC
ATTCATAAGTTTTGTGGATCATTTCAGACATGATGGACACCCCAAAAATG
AGATCTTGGAGAAGAAGGAGAAGAAAGAGGAAGCAAAAACTATGATGGGG
AGAAGAATAAGAAAAGAATTTAACAGGAGAGAGAGAGAGAGGCGTGACTT
AGTACTGGAAGGAGCGGAAGAAAGATGTGTTTCTGTGTGTGTGTGTGTGT
GTGCGTAAGGAGGAGAGACGGATAGTAAGCAGGAGGTGGGGCTTGAAATA
TCGGGCCAAAAAGAGGAGAAACCGAGTAAGAGAAGCAGCAGAGACAGAGA
TGCAGGCAACGTTTATAAAAGGAACACGAAATTGAAAAAAAGAAAATGGG
AATGGGAGCCGCATCGCTAGTCATTC
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protein sequence of NO25G00880.1

>NO25G00880.1-protein ID=NO25G00880.1-protein|Name=NO25G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MPLSARFISSPLVTSRNACGAGGRNLSARWGDDTSTLFFVLGLPLDKHSH
SLPISLPPHPHKHYTDEMSGPEDDAPKAPAAAAEGAEGTTTKAAEGGEGG
EAAAAEQAPSNGAGGAHKEDETDLPVASTKREEGSPEEGEEGKNKRSKDK
ERRRRSRSPRGSSRGRKEKRKSRSRSNSPRGDRRKRSRERERGSGSRRSR
RSASASRSPSPSSSRRARRRERVNNWDKPPEAVPGLVTGLPALGGLTGLG
GMSLGGLGGVGGTAGGGGQFLDPPMLDPSVMMGTSVLGPGGVVRGAIGTL
TAPTAPPNQQELFNGVLVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQA
MVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGAN
QLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHF
NDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSEL
NGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGQAGGGSG
GGGAVQPPLGPPTKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNV
VSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSG
RTVVCGFVKEEEYAAGNY*
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Synonyms
Publications