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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:247480..250055 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00880.1 vs.
Match: EWM21646.1 (splicing factor u2af large subunit [Nannochloropsis gaditana]) HSP 1 Score: 785.0 bits (2026), Expect = 1.800e-223 Identity = 453/612 (74.02%), Postives = 492/612 (80.39%), Query Frame = 0
Query: 68 MSGPEDDAPKAPAAAAEGAEGTTTKAAEG-GEGGEAAAAEQAPSNGAGGAHKED---ETDLPVASTKREEGSPEEGEEGKNKRSKDKERRR-----RSRSPRGSSRG-RKEKRKSRSRSNSPRGDRRKRSRERERGSGSRRSRRSASASRSPSPSSSRRARRRERVNNWDKPPEAVPGLVTGLPALGGLTGLGGMSLGGLGGVGGTAGGGGQFLDPPMLDPSVMMGTSVLGPGGVVRGAIGTLTAPTAPPNQQELFNGVLVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANPSPASAAA--TAALGGVAGLHPYAALLTGQAGGGSGGGGAVQPPLGPPTKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSGRTVVCGFVKEEEYAAGN 668
M G EDDA AAA G E + A GEG A + + G H+E+ + ++ + K G +E EE + K +ERRR RSRSPRG SRG R++KR+SRSRS SPRGDRR+RSR+RE G SRRSRRSAS SRS SP SSRR RRRER NNWDKPPE GL G A+ +L GLGG+G + G GQF+DPPMLDP VMMGT+ LG GGVVRGAIGTLTAPTAPPNQQELFNGV+VPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSA+APPIVGVQVNE+KPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGI+DPPTG SLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFG LKAFNLVKDPA+GTSKGFCFFEYLDH+LTD+VC+ELNGFELG+RKLICQRANPSPA AAA AAL G +HPYAALLTG + A PLGP TKVLKLSNMVV EEL+DD+EYEEIVMDIKEECGKYG VVSLKVPRP+YKEDGSVDVSPPGVGEVFVEF +E GA KAGNALRNRQFSGRTVVC FVKEE+YA GN
Sbjct: 1 MPGSEDDASGPGAAALPGEEESQPPAVRTEGEGASEALSSNGTGHKGGDVHEEEGRGKEEMGGPNGKERHGDRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDRE-GKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPE---GLTVGQGAVTA-------TLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAG-GSMHPYAALLTGSS--------AAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGN 592
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00880.1 ID=NO25G00880.1|Name=NO25G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp
GTCGTGGCCATGCGTCTATGCCTAAGGCTACTTTCTTTGCTTCCGTGAAG
ACCCAGACGTCTAGTTCATGCCTTTGAGTGCGAGATTTATTTCTAGTCCG
CTCGTTACAAGTCGTAACGCTTGCGGGGCGGGGGGGAGAAACCTAAGTGC
TCGATGGGGTGATGATACGTCCACTTTGTTCTTCGTCCTTGGCCTTCCTC
TCGACAAGCATTCACATTCTCTTCCCATTTCTCTCCCTCCCCACCCTCAC
AAACACTACACAGACGAAATGTCGGGCCCGGAAGATGATGCGCCCAAGGC
GCCTGCGGCTGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCG
AGGGAGGAGAGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAAC
GGCGCAGGTGGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATC
GACCAAGAGGGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACA
AGCGCAGCAAGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGC
AGCAGCCGTGGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAG
CCCGCGGGGGGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTG
GCAGTCGTCGCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCC
TCTTCGTCTCGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAA
GCCACCTGAGGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAG
GATTGACAGGACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGT
GGCACTGCCGGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCC
GAGCGTAATGATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGG
GCGCCATCGGGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAA
CTCTTCAACGGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCG
CCTGTACGTCGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGC
AACTCTTCAACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCC
CCTCCCATCGTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCT
CGAAACCCGCACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCA
TCACCATAGGCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAA
CCGCTTCCGGGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGG
ACACCTCCCTACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCT
CGATCCCCACCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCC
TTCGGCGAGCTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGAC
CAGCAAAGGCTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACC
AAGTGTGTTCGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATC
TGTCAACGGGCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACT
TGGCGGCGTCGCTGGCCTCCATCCGTACGCTGCTCTCCTCACTGGTCAAG
CAGGAGGAGGAAGCGGAGGAGGAGGAGCGGTGCAGCCACCCCTTGGCCCA
CCTACGAAGGTATTAAAATTGAGCAATATGGTGGTGGAGGAGGAATTGAA
GGATGACTCAGAGTACGAAGAAATCGTGATGGACATCAAGGAAGAGTGTG
GGAAATACGGTAATGTGGTATCGCTGAAGGTGCCGAGGCCTACATACAAG
GAGGACGGGAGCGTGGACGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGT
GGAGTTCGAGGAGGAGGCAGGGGCCATGAAGGCGGGGAACGCGCTGAGGA
ACAGACAATTCTCGGGGCGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAG
GAGTATGCGGCTGGAAATTATTAGGGGGCATGGGGGAGGAAGGAGAGGGA
GGGTAGAAGAGCAGGAGGAGGAGAGATGGGAGGAAAGGAGGAGGAAGGAG
GAGGAGAAACGGAGGGGACAATGGAGGGAGGTGGTCACTACGATATAGCC
ATTCATAAGTTTTGTGGATCATTTCAGACATGATGGACACCCCAAAAATG
AGATCTTGGAGAAGAAGGAGAAGAAAGAGGAAGCAAAAACTATGATGGGG
AGAAGAATAAGAAAAGAATTTAACAGGAGAGAGAGAGAGAGGCGTGACTT
AGTACTGGAAGGAGCGGAAGAAAGATGTGTTTCTGTGTGTGTGTGTGTGT
GTGCGTAAGGAGGAGAGACGGATAGTAAGCAGGAGGTGGGGCTTGAAATA
TCGGGCCAAAAAGAGGAGAAACCGAGTAAGAGAAGCAGCAGAGACAGAGA
TGCAGGCAACGTTTATAAAAGGAACACGAAATTGAAAAAAAGAAAATGGG
AATGGGAGCCGCATCGCTAGTCATTC back to topprotein sequence of NO25G00880.1 >NO25G00880.1-protein ID=NO25G00880.1-protein|Name=NO25G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MPLSARFISSPLVTSRNACGAGGRNLSARWGDDTSTLFFVLGLPLDKHSH
SLPISLPPHPHKHYTDEMSGPEDDAPKAPAAAAEGAEGTTTKAAEGGEGG
EAAAAEQAPSNGAGGAHKEDETDLPVASTKREEGSPEEGEEGKNKRSKDK
ERRRRSRSPRGSSRGRKEKRKSRSRSNSPRGDRRKRSRERERGSGSRRSR
RSASASRSPSPSSSRRARRRERVNNWDKPPEAVPGLVTGLPALGGLTGLG
GMSLGGLGGVGGTAGGGGQFLDPPMLDPSVMMGTSVLGPGGVVRGAIGTL
TAPTAPPNQQELFNGVLVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQA
MVAAGKGSASAPPIVGVQVNEAKPFAFLETRTPEDAANVLLFDGITIGAN
QLKVRRPKDFKPLPGIIDPPTGTSLIPGHLPTSVENTENKIYLGSIPTHF
NDLQVRELVSAFGELKAFNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSEL
NGFELGDRKLICQRANPSPASAAATAALGGVAGLHPYAALLTGQAGGGSG
GGGAVQPPLGPPTKVLKLSNMVVEEELKDDSEYEEIVMDIKEECGKYGNV
VSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNALRNRQFSG
RTVVCGFVKEEEYAAGNY* back to topmRNA from alignment at chr25:247480..250055- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00880.1 ID=NO25G00880.1|Name=NO25G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr25:247480..250055- (Nannochloropsis oceanica)
GTCGTGGCCATGCGTCTATGCCTAAGGCTACTTTCTTTGCTTCCGTGAAG
ACCCAGACGTCTAGTTCATGCCTTTGAGTGCGAGATTTATTTCTAGTCCG
CTCGTTACAAGTCGTAACGCTTGCGGGGCGGGGGGGAGAAACCTAAGTGC
TCGATGGGGTGATGATACGTCCACTTTGTTCTTCGTCCTTGGCCTTCCTC
TCGACAAGCATTCACATTCTCTTCCCATTTCTCTCCCTCCCCACCCTCAC
AAACACTACACAGACGAAATGTCGGGCCCGGAAGATGATGCGCCCAAGGC
GCCTGCGGCTGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCG
AGGGAGGAGAGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAAC
GGCGCAGGTGGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATC
GACCAAGAGGGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACA
AGCGCAGCAAGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGC
AGCAGCCGTGGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAG
CCCGCGGGGGGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTG
GCAGTCGTCGCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCC
TCTTCGTCTCGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAA
GCCACCTGAGGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAG
GATTGACAGGACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGT
GGCACTGCCGGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCC
GAGCGTAATGATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGG
GCGCCATCGGGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAA
CTCTTCAACGGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCG
CCTGTACGTCGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGC
AACTCTTCAACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCC
CCTCCCATCGTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCT
CGAAACCCGCACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCA
TCACCATAGGCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAA
CCGCTTCCGGGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGG
ACACCTCCCTACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCT
CGATCCCCACCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCC
TTCGGCGAGCTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGAC
CAGCAAAGGCTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACC
AAGTGTGTTCGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATC
TGTCAACGGGCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACT
TGGCGGCGTCGCTGGCCTCCATCCGTACGCTGCTCTCCTCACTGGTCAAG
CAGGAGGAGGAAGCGGAGGAGGAGGAGCGGTGCAGCCACCCCTTGGCCCA
CCTACGAAGGTATTAAAATTGAGCAATATGGTGGTGGAGGAGGAATTGAA
GGATGACTCAGAGTACGAAGAAATCGTGATGGACATCAAGGAAGAGTGTG
GGAAATACGGTAATGTGGTATCGCTGAAGGTGCCGAGGCCTACATACAAG
GAGGACGGGAGCGTGGACGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGT
GGAGTTCGAGGAGGAGGCAGGGGCCATGAAGGCGGGGAACGCGCTGAGGA
ACAGACAATTCTCGGGGCGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAG
GAGTATGCGGCTGGAAATTATTAGGGGGCATGGGGGAGGAAGGAGAGGGA
GGGTAGAAGAGCAGGAGGAGGAGAGATGGGAGGAAAGGAGGAGGAAGGAG
GAGGAGAAACGGAGGGGACAATGGAGGGAGGTGGTCACTACGATATAGCC
ATTCATAAGTTTTGTGGATCATTTCAGACATGATGGACACCCCAAAAATG
AGATCTTGGAGAAGAAGGAGAAGAAAGAGGAAGCAAAAACTATGATGGGG
AGAAGAATAAGAAAAGAATTTAACAGGAGAGAGAGAGAGAGGCGTGACTT
AGTACTGGAAGGAGCGGAAGAAAGATGTGTTTCTGTGTGTGTGTGTGTGT
GTGCGTAAGGAGGAGAGACGGATAGTAAGCAGGAGGTGGGGCTTGAAATA
TCGGGCCAAAAAGAGGAGAAACCGAGTAAGAGAAGCAGCAGAGACAGAGA
TGCAGGCAACGTTTATAAAAGGAACACGAAATTGAAAAAAAGAAAATGGG
AATGGGAGCCGCATCGCTAGTCATTC back to topCoding sequence (CDS) from alignment at chr25:247480..250055- >NO25G00880.1 ID=NO25G00880.1|Name=NO25G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at chr25:247480..250055- (Nannochloropsis oceanica)
ATGCCTTTGAGTGCGAGATTTATTTCTAGTCCGCTCGTTACAAGTCGTAA
CGCTTGCGGGGCGGGGGGGAGAAACCTAAGTGCTCGATGGGGTGATGATA
CGTCCACTTTGTTCTTCGTCCTTGGCCTTCCTCTCGACAAGCATTCACAT
TCTCTTCCCATTTCTCTCCCTCCCCACCCTCACAAACACTACACAGACGA
AATGTCGGGCCCGGAAGATGATGCGCCCAAGGCGCCTGCGGCTGCTGCTG
AAGGAGCAGAAGGCACCACCACCAAGGCAGCCGAGGGAGGAGAGGGAGGG
GAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAACGGCGCAGGTGGTGCGCA
CAAAGAAGACGAAACTGACCTGCCTGTGGCATCGACCAAGAGGGAGGAGG
GCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACAAGCGCAGCAAGGACAAA
GAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGCAGCAGCCGTGGCAGGAA
GGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAGCCCGCGGGGGGACAGGA
GAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTGGCAGTCGTCGCTCCCGT
CGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCCTCTTCGTCTCGACGGGC
CCGGCGTCGTGAGAGGGTCAATAACTGGGATAAGCCACCTGAGGCCGTTC
CTGGCCTTGTGACTGGACTGCCTGCCCTAGGAGGATTGACAGGACTGGGG
GGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGTGGCACTGCCGGTGGGGG
TGGCCAGTTTCTGGACCCCCCTATGCTGGATCCGAGCGTAATGATGGGGA
CGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGGGCGCCATCGGGACATTG
ACCGCCCCGACGGCCCCTCCCAACCAGCAAGAACTCTTCAACGGCGTCCT
CGTTCCCACCATGATGCTCCGCCAAGCCAAGCGCCTGTACGTCGGGAACG
TGCCCATGGGCTGTGACCAGTTCGTCTTGATGCAACTCTTCAACCAGGCC
ATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCCCCTCCCATCGTCGGGGT
TCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCTCGAAACCCGCACCCCCG
AAGACGCTGCCAACGTCCTCCTCTTCGATGGCATCACCATAGGCGCCAAC
CAACTCAAGGTCCGCCGGCCTAAGGATTTTAAACCGCTTCCGGGTATCAT
CGACCCTCCCACAGGCACGAGTCTCATCCCTGGACACCTCCCTACCAGTG
TTGAAAACACTGAGAACAAAATCTATCTTGGCTCGATCCCCACCCATTTC
AATGACCTCCAAGTCCGGGAGCTCGTCTCGGCCTTCGGCGAGCTCAAGGC
TTTCAACCTGGTCAAGGACCCCGCTATGGGGACCAGCAAAGGCTTCTGTT
TCTTTGAATACCTTGATCATTCCCTCACGGACCAAGTGTGTTCGGAGCTG
AATGGCTTCGAACTCGGCGACCGGAAGCTCATCTGTCAACGGGCAAATCC
CTCCCCAGCGTCTGCGGCCGCCACTGCAGCACTTGGCGGCGTCGCTGGCC
TCCATCCGTACGCTGCTCTCCTCACTGGTCAAGCAGGAGGAGGAAGCGGA
GGAGGAGGAGCGGTGCAGCCACCCCTTGGCCCACCTACGAAGGTATTAAA
ATTGAGCAATATGGTGGTGGAGGAGGAATTGAAGGATGACTCAGAGTACG
AAGAAATCGTGATGGACATCAAGGAAGAGTGTGGGAAATACGGTAATGTG
GTATCGCTGAAGGTGCCGAGGCCTACATACAAGGAGGACGGGAGCGTGGA
CGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGTGGAGTTCGAGGAGGAGG
CAGGGGCCATGAAGGCGGGGAACGCGCTGAGGAACAGACAATTCTCGGGG
CGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAGGAGTATGCGGCTGGAAA
TTATTAG back to top
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