NO25G00860, NO25G00860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G00860 vs. NCBI_GenBank
Match: XP_002184619.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44018.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 111.3 bits (277), Expect = 3.600e-21 Identity = 69/177 (38.98%), Postives = 103/177 (58.19%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 ++L+ + A APA + +RT M+FENE G PLG++DPLGL ADGD +KF+R R +E+KHGR++MLA++ L+ G+ LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE K + E+N GR A + Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQM 179
BLAST of NO25G00860 vs. NCBI_GenBank
Match: ACE80197.1 (chloroplast light harvesting protein lhcf5 [Saccharina japonica]) HSP 1 Score: 110.9 bits (276), Expect = 4.800e-21 Identity = 75/212 (35.38%), Postives = 111/212 (52.36%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIP-QSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQK-EDKIPGDVQPDTSAFA-KLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLL 206 +A++ V+ GAQAF+AP+ ++ +MSFE+E G APLG+WDPLGL AD D ++F R R +E+KHGR+AMLA+ L T LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D+ +EE + E+NNGR A + V L N + + L+ Sbjct: 3 SAVMAVACAAGAQAFVAPSAFNGAALTTSAKASSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDNMSEETQASKRAIELNNGRAAQMGILALMVHEELNNQPYIINNLV 211
BLAST of NO25G00860 vs. NCBI_GenBank
Match: GAX21258.1 (hypothetical protein FisN_1Lh087 [Fistulifera solaris]) HSP 1 Score: 110.9 bits (276), Expect = 4.800e-21 Identity = 73/185 (39.46%), Postives = 107/185 (57.84%), Query Frame = 0 Query: 1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALE--VLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 MK A L ++L+ + A APA K + T + +FENE GV PLG+WDPLGL ADGD +F+R R +EIKHGR+ MLA+ L T AG+ LPGL++ +P G A++ A A G Q+L F LE V+ + + PGD + + F + ++++ L+ + E+NNGR A + Sbjct: 1 MKFAVL---ASLLASAAAFAPAQKTASTTSL--KAFENEVGVQQPLGFWDPLGLVADGDQARFDRLRFVEIKHGRICMLAVAGYLTTEAGIRLPGLISYDGTSFADIPSGFDALS--AVPAAGITQILAFIGFLEIAVMRDRVGGEFPGDFRNNFIDFG-WNTFSDQKKLEKRAIELNNGRAAQM 177
BLAST of NO25G00860 vs. NCBI_GenBank
Match: XP_002184620.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >CAA38956.1 fucoxanthin chlorophyll protein 3 [Phaeodactylum tricornutum] >EEC44019.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 110.2 bits (274), Expect = 8.100e-21 Identity = 70/177 (39.55%), Postives = 103/177 (58.19%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 ++L+ + A APA + +RT M+FENE G PLG++DPLGL ADGD +KF+R R +EIKHGR++MLA+ L+ G+ LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE ++ + E+N GR A + Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQM 179
BLAST of NO25G00860 vs. NCBI_GenBank
Match: Q08584.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic; Flags: Precursor >CAA80894.1 light harvesting protein [Phaeodactylum tricornutum]) HSP 1 Score: 110.2 bits (274), Expect = 8.100e-21 Identity = 68/177 (38.42%), Postives = 102/177 (57.63%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 ++L+ ++A APA + +RT M+FENE G PLGYWDPLGL ADG+ +KF+R R +EIKHGR+ MLA+ L AG+ LPG + +S+P G A++ A G AQ++ F E+ A K+ + GD + + F D +E++ L+ + E+N GR A + Sbjct: 7 ASLLASRAAFAPAQQSARTSVATNMAFENEIGAQQPLGYWDPLGLVADGNQEKFDRLRYVEIKHGRICMLAVAGYLTQEAGIRLPGDIDYSGTSFESIPNGFAALS--AVPGAGIAQIIAFIGFFEI-AVMKDITGGEFVGDFRNNYLDFG-WDTFSEDKKLQKRAIELNQGRAAQM 179
BLAST of NO25G00860 vs. NCBI_GenBank
Match: AAG13005.1 (light harvesting protein lhcf4 [Saccharina latissima]) HSP 1 Score: 110.2 bits (274), Expect = 8.100e-21 Identity = 74/212 (34.91%), Postives = 112/212 (52.83%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIP-QSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQK-EDKIPGDVQPDTSAFA-KLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLL 206 +A++ ++ GAQAF+AP+ +++ +MSFE+E G APLG+WDPLGL AD D ++F R R +E+KHGR+AMLA+ L T LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D+ +EE + E+NNGR A + V L N + + L+ Sbjct: 3 SAVMAMACAAGAQAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFAFIGFLELAVMKNVEGSFPGDFTNGGNPFASSWDNMSEETQASKRAIELNNGRAAQMGILALMVHEELNNQPYIINNLV 211
BLAST of NO25G00860 vs. NCBI_GenBank
Match: Q41093.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor >CAA80676.1 FcpE [Phaeodactylum tricornutum]) HSP 1 Score: 109.8 bits (273), Expect = 1.100e-20 Identity = 70/177 (39.55%), Postives = 103/177 (58.19%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 ++L+ + A APA + +RT M+FENE G PLG++DPLGL ADGD +KF+R R +EIKHGR++MLA+ L+ G+ LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE ++ + E+N GR A + Sbjct: 7 ASLLASAARFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQM 179
BLAST of NO25G00860 vs. NCBI_GenBank
Match: AAG13008.1 (light harvesting protein lhcf7 [Saccharina latissima]) HSP 1 Score: 109.8 bits (273), Expect = 1.100e-20 Identity = 75/212 (35.38%), Postives = 111/212 (52.36%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIP-QSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQK-EDKIPGDVQPDTSAFA-KLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLL 206 +A++ V+ GAQAF+AP+ ++ +MSFE+E G APLG+WDPLGL AD D ++F R R +E+KHGR+AMLA+ L T LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D+ +EE + E+NNGR A + V L N + + L+ Sbjct: 3 SAVMAVACAAGAQAFVAPSAFNGAALTTSAKASSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFGFIGFLELAVMKNVEGSFPGDFTNGGNPFASSWDNMSEETQASKRAIELNNGRAAQMGILALMVHEELNNQPYIINNLV 211
BLAST of NO25G00860 vs. NCBI_GenBank
Match: AAG13003.1 (light harvesting protein lhcf2 [Saccharina latissima]) HSP 1 Score: 109.8 bits (273), Expect = 1.100e-20 Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIP-QSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQK-EDKIPGDVQPDTSAFA-KLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLL 206 +A++ V+ GAQAF+AP+ ++ +MSFE+E G APLG+WDPLGL AD D ++F R R +E+KHGR+AMLA+ L T LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D +EE + E+NNGR A + V L N + + L+ Sbjct: 3 SAIMAVACAAGAQAFVAPSAFNGAALTTSAKASSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFGFIGFLELAVMKNVEGSFPGDFTNGGNPFASSWDSMSEETQASKRAIELNNGRAAQMGILALMVHEELNNQPYIINNLV 211
BLAST of NO25G00860 vs. NCBI_GenBank
Match: Q41094.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic; Flags: Precursor >CAA80677.1 FcpF [Phaeodactylum tricornutum]) HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20 Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMV 184 ++L+ + A APA + +RT M+FE+E G PLG++DPLGL ADGD +KF+R R +E+KHGR++MLA++ L+ G+ LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE K + E+N GR A + Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFESELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQM 179 The following BLAST results are available for this feature:
BLAST of NO25G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G00860 ID=NO25G00860|Name=NO25G00860|organism=Nannochloropsis oceanica|type=gene|length=4712bpback to top protein sequence of NO25G00860.1 >NO25G00860.1-protein ID=NO25G00860.1-protein|Name=NO25G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bpback to top Synonyms
Publications
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