|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:239102..243813 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00860.1 vs.
Match: AET85054.1 (VCP1 [Nannochloropsis sp. W2J3B]) HSP 1 Score: 416.4 bits (1069), Expect = 5.300e-113 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query: 1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 210
MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG
Sbjct: 1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 209
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00860.1 ID=NO25G00860.1|Name=NO25G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=3731bp GCTGATGATGCCGTCGACATCTGTGCATGTAATAGGGATGTAGTGAATGT GTGTGTATGTGTCTTGCGCTCGGGGCTGCTGTAACTAGCCCACACGATAA ACACTTCGAATTCCTTGACCGAGAGCCCAGCTATCCAATCTCACATGGGA TGCATGTGTGAAGGAGGATGGGCGGCGATGAATAGAAAAATTAGGATATA CCTCCGAAATGCCTGTGTGATGATGACGTGTGCTGTGCGGCTCTGATGCA GCACTCGCTTCCCTCTCTCCCGTCTTCGCTAATCAAGCAGTCTTGATTAT TGGTCCGCTCCACCTAGTACTCTCCCCGTTGTGCTTACCTGCATGGTGGG TGCCTGCTCTTGCGCAACCGCACCCATACTGCTGTTATTGCTTCTGCTGC CTCGTTGGAGTAGCTGGGGGTGATGGCCCAGTATCGGAGGCGAGCCGAGG CAGTACGCTACGGCGGTGGTGCGGTGCACTTAAGTGCGGTGATGCGTAAG TTTGTGCCTGCCGTTATGATGGTTGGTGGATGCGTACGTGGTGGTTGGAT GGCGTGAGAATAATGGTTTTGCATGTGGAGGGATGAACGAGGAGGATCTG CGTTCCCGGCGGCGTTGGAGGACCAGGCGACGCAAGTCCGCACTGATCGG AGGTGACCGTAATCCTAATGCAAAGTGCAACAAGCGACAAGCGCAGAGGC GGTGGGCTTGTCCAGTTACGGCACATGGAAATCGCCGAGATCTTGTTGAG GGTTGAGGCTGTAGATTTGTTTTCCGTGATCTTTGCCAAAACTGCCTTCT GCTTCTTCTCATTAGGCGTGTGTCTTTGGCTTGTTTTTCTTTTGTTCTTT TCGCTCTTCCCCCCACTACAAGCTGGTGTCTTAATTGCACGCGTCTCTGA AGTCTTGAGCTTTTGTCTCGTGCTCCACTTTTAGGACGACGACCACGGCA AGTGTCATGGGACGTTAAGCCCTGGTGTGCGCTGAAACTTGTACAGCAGA GCTTTGCTTTGCATGTGTAGCATCCCAGCTTGTGCACTTAATTGCTCGGG GTCGTTTATTTCTCTGCCAGCCTTGGACCTCGTGGTTGGGCGTTTCCTCC TCCTTGGTGCACTGAACCTGTCCGCATCCTGCGTCGGTTTGGCGGTCTTT TGTCCTTTCCTCTATAGCCCGCCCGTCTAGAGGGCACACGCGATGATCTT TATATCTCTTCATGTGTCTTTGTTTTAACTAGGATACTGCCGGGTGAATG CCCATCAGACAAGAGGCCAAACTCTATCTACACCCTTTTGACTTCTGTTG TGGTCGTAGTGTGTGCTTGCATGCCCTGAAAGTCCAGGCATCCCACTTGT GCTCTAACCCCATTCAAAACAGCAGAAGTGCTTAATTAAGATATAGATTC ATGATCTCCTGTCCCCTCCTTCTTACCTTTTCACAAACCTCACACAGAAG TCTCCACTCTTCGCCTCTAAAACCTCTTTTTAAATTATGAAGACCGCCGC TCTCCTCACTGTCTCCACCCTCATGGGCGCCCAGGCCTTTATGGCCCCCG CCCCCAAGTTCTCCCGCACCCGCGGTGTTGCGCGCATGTCCTTCGAGAAC GAGGCCGGCGTCACCGCCCCTCTCGGATACTGGGACCCCCTGGGCCTCTC CGCTGATGGGGACGTTGACAAGTTCAACCGTTACCGCGCCATTGAGATCA AGCACGGCCGAGTCGCTATGTTGGCCATGCTCCACACCCTCATCACGGGC GCCGGTGTCACGCTCCCGGGCCTCGTGACCGCAGGTGACGGCATCCCCCA GTCCATGCCCTACGGCATTGGCGCCATCACCTCCGGTGCGTGGGCCGCCC AGGGCTGGGCGCAGGTCTTGATCTTCTGCTCTGCCCTCGAGGTGCTTGCC CCCCAGAAGGAGGACAAGATCCCCGGGGATGTCCAGCCCGACACGAGCGC ATTCGCTAAGCTCGACGACAAGACCGAGGAGGAGGCGCTCAAGTACCAGA ACACTGAGATCAACAACGGCCGATTGGCGATGGTGGCTTGGACGGGCGCG ACTGTCGGTGCCCTCCTGACCAACGGCGAGCACCCTGTGACCACCCTCCT CAACAAGTTGGGCTAAGCTTCTGTGGAAGAGCCAGTGGTAGTAGCAGTAG CAGCAGCAGTAGCAGCCGCAGCACTCAGTGTTGGCGCGAGAGATTGTCCA TCCCTTCTTAACCTACCGGAAGAGAAATAAGGCCTTTCTCCCGTAGCTGT CTTCGTTTGTTTGTGCTGATTGCTTGGTATGAGAGTGTTGAATTCCTGCA TCATGTTTTTCTCTGTAGTCCTTTCCTACCCCCGTCATTTTCTTTTCTCC CTGGTTCTTCTTTTGTCACCCTTATTTTACATAAAATTTTCTTTGTTTAT AGTGAGAGGAAGGTAGAGAGGGGAAAACAAGAACAACGAACGCAAGCGTG TGAAAGGAGGGCGAATAGAAGAGAAACAGATCTGTTGAGCATTGAGAGTG GAGCCGGGGGAAAGGCTTGTGTGTTGTTTTTGAAAAAGTTGTTTAAATCA CGAATCCGTTAGTTCTCATGTGTACCTCTTTCACTACATGTGATGGAGAA AACAAAAGTGTGAGGATTAATTGAAGAAAAAGAAGAGTTCGACACGTCAA ACCGCCCAAAAGACGTCACAAAGAGAACTTGATTCTCTTTGCCGTGTTGA TCTTGTCTTTTCCCCCAGCTTTTCTTGCCACCCGTGGCACACGAGATGGA CAAGATCAGCGCGCGAAAGTTTGCTTCCTAATTCTTTGCTTTAACGGATG TCCATTTAATAGACGTGTTTTGTTTAATTTCTTTCACATTTTGACAGACA CTTTCGTCGTCATTGCCATTATTGCTGATAGGACTCTTGGGTGATCCCGC AATTTACCTGCCCATAATTATCCATGCTTTCTCTCCTGTGTTGCTGGTAC TGGTTGGGCTGATGGAGCTGGTGCCGGGGCTGGTGCAGCAGCTTGTGTTA CCGTTACTGCTGATATTGCTGTTGGTGCCTCCCTCCGCACGCCCAACCAC TATCCGTCCCTCCTCATACCAAAACACACACACTTATCCTGCCCCTTCGC ATTGCTTGAACAATGAAAGGCCGTTGCCAACTTGTGGCGACACCCACCGC AAACATTACAGCCACTACTACTACTACTTCTTCTACTTCCACTAGCTCCT GTCCTCTTCAGCTGCTGCCCTCGCAATCCTCCCCGCCGCATGATCCATCA CACTCCGTCCCTTCTTAAACAAGTATGTCCCCACCCTACTCCTACTCAAC GCACAAATAATATTATGCGCTGACCAAAATGACGGCGCTCGAAACGTCAC AGCAACCTTTTCCCAGCCTAAGCTGTTCAGCCTCGCTGCCATTGCTTCCT CCATCCATTCCTCATTCTCTCCTCCCAACGCACCACCAGCAGCCAAACGA ATCGACGCAAGTCTACCCATTCTATCTCTCTCCTCCTCACCCACAACCGC CCAAGAGCCCCTTCTTCTTCCTACTCCCACTCCTCCTTCCCTCCCTTCCT CCTCCTCCACCCACTCCCTTCTCGGAATTTCCCAAACCTCCATTTTGACA TCATTCTTCTCCACGGTCGGCAAAATTAAAGTTTCCTTCAAGATGTGCCC TCTCTGTTCAAAACTACTACCATAAGTAATACAACTAGTGCTGGTACTAC TGCTTTCTCCTCCTCCTCCTCCTCCCCCTCC back to topprotein sequence of NO25G00860.1 >NO25G00860.1-protein ID=NO25G00860.1-protein|Name=NO25G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWD PLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAG DGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQ PDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHP VTTLLNKLG* back to topmRNA from alignment at chr25:239102..243813- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00860.1 ID=NO25G00860.1|Name=NO25G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=4712bp|location=Sequence derived from alignment at chr25:239102..243813- (Nannochloropsis oceanica) GCTGATGATGCCGTCGACATCTGTGCATGTAATAGGGATGTAGTGAATGT
GTGTGTATGTGTCTTGCGCTCGGGGCTGCTGTAACTAGCCCACACGATAA
ACACTTCGAATTCCTTGACCGAGAGCCCAGCTATCCAATCTCACATGGGA
TGCATGTGTGAAGGAGGATGGGCGGCGATGAATAGAAAAATTAGGATATA
CCTCCGAAATGCCTGTGTGATGATGACGTGTGCTGTGCGGCTCTGATGCA
GCACTCGCTTCCCTCTCTCCCGTCTTCGCTAATCAAGCAGTCTTGATTAT
TGGTCCGCTCCACCTAGTACTCTCCCCGTTGTGCTTACCTGCATGGTGGG
TGCCTGCTCTTGCGCAACCGCACCCATACTGCTGTTATTGCTTCTGCTGC
CTCGTTGGAGTAGCTGGGGGTGATGGCCCAGTATCGGAGGCGAGCCGAGG
CAGTACGCTACGGCGGTGGTGCGGTGCACTTAAGTGCGGTGATGCGTAAG
TTTGTGCCTGCCGTTATGATGGTTGGTGGATGCGTACGTGGTGGTTGGAT
GGCGTGAGAATAATGGTTTTGCATGTGGAGGGATGAACGAGGAGGATCTG
CGTTCCCGGCGGCGTTGGAGGACCAGGCGACGCAAGTCCGCACTGATCGG
AGGTGACCGTAATCCTAATGCAAAGTGCAACAAGCGACAAGCGCAGAGGC
GGTGGGCTTGTCCAGTTACGGCACATGGAAATCGCCGAGATCTTGTTGAG
GGTTGAGGCTGTAGATTTGTTTTCCGTGATCTTTGCCAAAACTGCCTTCT
GCTTCTTCTCATTAGGCGTGTGTCTTTGGCTTGTTTTTCTTTTGTTCTTT
TCGCTCTTCCCCCCACTACAAGCTGGTGTCTTAATTGCACGCGTCTCTGA
AGTCTTGAGCTTTTGTCTCGTGCTCCACTTTTAGGACGACGACCACGGCA
AGTGTCATGGGACGTTAAGCCCTGGTGTGCGCTGAAACTTGTACAGCAGA
GCTTTGCTTTGCATGTGTAGCATCCCAGCTTGTGCACTTAATTGCTCGGG
GTCGTTTATTTCTCTGCCAGCCTTGGACCTCGTGGTTGGGCGTTTCCTCC
TCCTTGGTGCACTGAACCTGTCCGCATCCTGCGTCGGTTTGGCGGTCTTT
TGTCCTTTCCTCTATAGCCCGCCCGTCTAGAGGGCACACGCGATGATCTT
TATATCTCTTCATGTGTCTTTGTTTTAACTAGGATACTGCCGGGTGAATG
CCCATCAGACAAGAGGCCAAACTCTATCTACACCCTTTTGACTTCTGTTG
TGGTCGTAGTGTGTGCTTGCATGCCCTGAAAGTCCAGGCATCCCACTTGT
GCTCTAACCCCATTCAAAACAGCAGAAGTGCTTAATTAAGATATAGATTC
ATGATCTCCTGTCCCCTCCTTCTTACCTTTTCACAAACCTCACACAGAAG
TCTCCACTCTTCGCCTCTAAAACCTCTTTTTAAATTATGGTAAGTTCGTG
CGGCAGTGGGTTTTCGGATCTATATTTGTCAAGATCCAGTTCAAGGTCAG
GGATGTAGATTAAGTACAGAAGGAGAAGCACAAGCGCGCCAGTTCGCCCC
TCACGGCCTGGAGCAGGGCATTTAATCCCTCTATCTTACCAGAACCATAC
TATACAACCAATCCTGTTGGCATCGCTCTGTCTATTTGTCGTGCGTGCAT
GTGTCCATGGTGTGGTGGGGGGCAGGGGTTTTCGGGGTTGCGGTTGAAGG
CACCTTATCAGAAAGATGCCCTCAGAGATAGAGGTAGCCCCCTCCCCCCG
ATCTTCGACCAGTCCTGTCAGGCGAACACTTTCACCCGTCGTTCACCTCG
TTACACACAAGGAGTAGACCTCTGAAGTTCTAATTGTCATAAATGCCCCT
CCCCCCTCCCTCCTTCCCTTCATCCTCCCCTCCGAGCAGAAGACCGCCGC
TCTCCTCACTGTCTCCACCCTCATGGGCGCCCAGGCCTTTATGGCCCCCG
CCCCCAAGTTCTCCCGCACCCGCGGTGTTGCGCGCATGTCCTTCGAGAAC
GAGGCCGGCGTCACCGCCCCTCTCGGATACTGGGTGAGTGCTTCCCTCCT
TCCCCGCCCTCTTCAGCCCAACACCAAGTTCCAAGTTTTGAGTTTTAGTG
GAACCCGTCGTCGCTCCTTCTCACCCTCCTTCTTTCCCTTCCTCCCTTCT
TAACAGGACCCCCTGGGCCTCTCCGCTGATGGGGACGTTGACAAGTTCAA
CCGTTACCGCGCCATTGAGGTAAGGATCCGAGCGTTCTAAAAGGGAGAGC
TTACGCGAGCTTTTTATGTCCCCACACTCCCCATCCAACAAGAATACCGG
TTTTTGCAGCTCAATCCCTCTCGCCCTGTCCCTTCGATCACTCCCATCTC
AGATCAAGCACGGCCGAGTCGCTATGTTGGCCATGCTCCACACCCTCATC
ACGGGCGCCGGTGTCACGGTATGTTCGCCTGTCTGGACCCTTCGTTTCCT
CCCTCCTTCCCTCCCCCGTCTCATGTTGGCCAATCTACGATTAAAATACC
AGACAAATCACTCACTCACACCGCCCTCCCTCCTTCCCTCCTTTTCCTCG
CTAGCTCCCGGGCCTCGTGACCGCAGGTGACGGCATCCCCCAGTCCATGC
CCTACGGCATTGGCGCCATCACCTCCGGTGCGTGGGCCGCCCAGGGCTGG
GCGCAGGTCTTGATCTTCTGCTCTGCCCTCGAGGTGCTTGCCCCCCAGAA
GGAGGACAAGATCCCCGGGGATGTCCAGCCCGACACGAGCGCATTCGCTA
AGCTCGACGACAAGACCGAGGAGGAGGCGCTCAAGTACCAGAACACTGAG
ATCAACAACGGCCGGTACGTTCTGCGCGGAGGGAAGGGAAGAGGGGAGGA
GAAGTTTGAGGCGGTGGGACAGACGAAGCGGACGGCTAGTGTCATGTGAT
TATTTTTTATTAACCATCCCTCCCCCTCTCTCCCTCCCTCCCTCCCTTCC
TAGATTGGCGATGGTGGCTTGGACGGGCGCGACTGTCGGTGCCCTCCTGA
CCAACGGCGAGCACCCTGTGACCACCCTCCTCAACAAGTTGGGCTAAGCT
TCTGTGGAAGAGCCAGTGGTAGTAGCAGTAGCAGCAGCAGTAGCAGCCGC
AGCACTCAGTGTTGGCGCGAGAGATTGTCCATCCCTTCTTAACCTACCGG
AAGAGAAATAAGGCCTTTCTCCCGTAGCTGTCTTCGTTTGTTTGTGCTGA
TTGCTTGGTATGAGAGTGTTGAATTCCTGCATCATGTTTTTCTCTGTAGT
CCTTTCCTACCCCCGTCATTTTCTTTTCTCCCTGGTTCTTCTTTTGTCAC
CCTTATTTTACATAAAATTTTCTTTGTTTATAGTGAGAGGAAGGTAGAGA
GGGGAAAACAAGAACAACGAACGCAAGCGTGTGAAAGGAGGGCGAATAGA
AGAGAAACAGATCTGTTGAGCATTGAGAGTGGAGCCGGGGGAAAGGCTTG
TGTGTTGTTTTTGAAAAAGTTGTTTAAATCACGAATCCGTTAGTTCTCAT
GTGTACCTCTTTCACTACATGTGATGGAGAAAACAAAAGTGTGAGGATTA
ATTGAAGAAAAAGAAGAGTTCGACACGTCAAACCGCCCAAAAGACGTCAC
AAAGAGAACTTGATTCTCTTTGCCGTGTTGATCTTGTCTTTTCCCCCAGC
TTTTCTTGCCACCCGTGGCACACGAGATGGACAAGATCAGCGCGCGAAAG
TTTGCTTCCTAATTCTTTGCTTTAACGGATGTCCATTTAATAGACGTGTT
TTGTTTAATTTCTTTCACATTTTGACAGACACTTTCGTCGTCATTGCCAT
TATTGCTGATAGGACTCTTGGGTGATCCCGCAATTTACCTGCCCATAATT
ATCCATGCTTTCTCTCCTGTGTTGCTGGTACTGGTTGGGCTGATGGAGCT
GGTGCCGGGGCTGGTGCAGCAGCTTGTGTTACCGTTACTGCTGATATTGC
TGTTGGTGCCTCCCTCCGCACGCCCAACCACTATCCGTCCCTCCTCATAC
CAAAACACACACACTTATCCTGCCCCTTCGCATTGCTTGAACAATGAAAG
GCCGTTGCCAACTTGTGGCGACACCCACCGCAAACATTACAGCCACTACT
ACTACTACTTCTTCTACTTCCACTAGCTCCTGTCCTCTTCAGCTGCTGCC
CTCGCAATCCTCCCCGCCGCATGATCCATCACACTCCGTCCCTTCTTAAA
CAAGTATGTCCCCACCCTACTCCTACTCAACGCACAAATAATATTATGCG
CTGACCAAAATGACGGCGCTCGAAACGTCACAGCAACCTTTTCCCAGCCT
AAGCTGTTCAGCCTCGCTGCCATTGCTTCCTCCATCCATTCCTCATTCTC
TCCTCCCAACGCACCACCAGCAGCCAAACGAATCGACGCAAGTCTACCCA
TTCTATCTCTCTCCTCCTCACCCACAACCGCCCAAGAGCCCCTTCTTCTT
CCTACTCCCACTCCTCCTTCCCTCCCTTCCTCCTCCTCCACCCACTCCCT
TCTCGGAATTTCCCAAACCTCCATTTTGACATCATTCTTCTCCACGGTCG
GCAAAATTAAAGTTTCCTTCAAGATGTGCCCTCTCTGTTCAAAACTACTA
CCATAAGTAATACAACTAGTGCTGGTACTACTGCTTTCTCCTCCTCCTCC
TCCTCCCCCTCC back to topCoding sequence (CDS) from alignment at chr25:239102..243813- >NO25G00860.1 ID=NO25G00860.1|Name=NO25G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr25:239102..243813- (Nannochloropsis oceanica) ATGAAGACCGCCGCTCTCCTCACTGTCTCCACCCTCATGGGCGCCCAGGC CTTTATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGTTGCGCGCA TGTCCTTCGAGAACGAGGCCGGCGTCACCGCCCCTCTCGGATACTGGGAC CCCCTGGGCCTCTCCGCTGATGGGGACGTTGACAAGTTCAACCGTTACCG CGCCATTGAGATCAAGCACGGCCGAGTCGCTATGTTGGCCATGCTCCACA CCCTCATCACGGGCGCCGGTGTCACGCTCCCGGGCCTCGTGACCGCAGGT GACGGCATCCCCCAGTCCATGCCCTACGGCATTGGCGCCATCACCTCCGG TGCGTGGGCCGCCCAGGGCTGGGCGCAGGTCTTGATCTTCTGCTCTGCCC TCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTCCAG CCCGACACGAGCGCATTCGCTAAGCTCGACGACAAGACCGAGGAGGAGGC GCTCAAGTACCAGAACACTGAGATCAACAACGGCCGATTGGCGATGGTGG CTTGGACGGGCGCGACTGTCGGTGCCCTCCTGACCAACGGCGAGCACCCT GTGACCACCCTCCTCAACAAGTTGGGCTAA back to top
|