NO25G00680, NO25G00680 (gene) Nannochloropsis oceanica

Overview
NameNO25G00680
Unique NameNO25G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr25:186911..188338 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:186911..188338 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G00680 vs. NCBI_GenBank
Match: EWM21614.1 (hypothetical protein Naga_100012g68 [Nannochloropsis gaditana])

HSP 1 Score: 214.2 bits (544), Expect = 5.500e-52
Identity = 137/295 (46.44%), Postives = 171/295 (57.97%), Query Frame = 0 
Query:    7 DERCAVIQAVSHRNELPQLLNFLRATCIDALLQESWVSRETVLTAATADRRQRAVTLKDEYVEPVVSSTESPGMHLRLRGSVQLR-------XXXXXXXXXXXXXXXXXXXXXXXWKKRDIRSSAEALIRRRVTTPVHGEEIEEEDNAEVEED-----------------VARN--GTNRREKGVEAFMQFQGCVPRSSALLKRGIRCQFTRDVRLAVFTVXXXXXXXXXXXXXXXXGEGYPLGIGSGPTEEEGGREGEGDTRDLLLVELEAPVGAHKGVLGAIEAVKNAAAVLQ 276
            DERCAVIQ +SHR+ELP+LL+FLRA C+D LLQESWVSRE VL  A+ DRR+RAVTL+DE++E V SSTESP +HLRL+GS + +                              +++RD+RSSAE LIR R+TTPV+GE++  E   E EED                 VAR     N+ E   E F++FQGC  +S  LLKRGIRCQ T  VR+++F +                G+    G G       GG EG+    DLL VELEAPVGAH  VL +IEAVK AAA L+
Sbjct:    6 DERCAVIQGISHRSELPKLLSFLRAACLDPLLQESWVSREKVLAPASIDRRRRAVTLRDEFIERVSSSTESPHLHLRLKGSCRQQNGGSTGFEGGAGLGGRRGMKGRERTQRVLMYEERDVRSSAEVLIRHRITTPVYGEDVAGE---EPEEDGGAGRGAGAKKERATTTVARAEVARNQEEGAFETFLRFQGCSVQSRELLKRGIRCQLTEGVRISLFRI--------------ERGQQELSGTG-------GGGEGDDAAMDLLFVELEAPVGAHGSVLASIEAVKEAAAFLR 276
The following BLAST results are available for this feature:
BLAST of NO25G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21614.15.500e-5246.44hypothetical protein Naga_100012g68 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004362NSK004362Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00680.1NO25G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641950gene_8553Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g68gene8840Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00680.1NO25G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00680 ID=NO25G00680|Name=NO25G00680|organism=Nannochloropsis oceanica|type=gene|length=1428bp
ATGGACAACGCCGGTCATGACGAGCGCTGCGCGGTCATTCAAGCCGTCTC
Ggtgcgtcatgatagctgctataccgtcccaccgttgcccttcaccctcc
ctccccgtcaccccacacccctccctccccgtcaccccacacccctccct
cccctccctcccctccctcccctccctctttcccacccccccagCATCGA
AACGAGCTTCCTCAGCTTCTCAATTTTCTCCGAGCTACCTGTATCGACGC
CCTTCTGCAAGAGTCCTGGGTGAGCCGAGAAACTGTCCTGACAGCAGCGA
CGGCAGACAGGAGACAACGTGCTGTGACATTGAAAGATGAGTATGTGGAG
CCTGTGGTGAGCAGCACAGAGAGCCCCGGGATGCATTTGCGTTTGAGGGG
ATCAGTTCAATTGCGGCAGCAGGAGGAGGAGGAGGGGAAAGACGAGGAGG
AGGAGATGGAAAGGCCAGAAGATGAGGACGATGTATGGAAAAgtaggggc
cggaggaaaggaggggggaagggagggagaaaggggggaggaagggaatg
gctaggcgagtggtggtgtacgaagAGCGGGACATTCGGTCGAGCGCTGA
GGCATTAATTCGTCGCCGCGTGACGACACCTGTACATGGAGAGGAAATCG
AGGAGGAGGACAATGCGGAGGTCGAGGAGGACGTGGCACGAAACGGCACC
AACAGGAGGGAAAAGGGGGTAGAAGCGTTCATGCAGTTTCAGGGGTGTGT
GCCTCGCTCTTCAGCACTGTTGAAGAGAGGGATTAGATGTCAGTTTACCA
GAGATGTTCGTTTGGCCGTCTTTACTGTGGTTGTTGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGGTGATGATTGGAGGGGAGGGGTACCCGCTTGGCAT
CGGCAGCGGTCCCACAGAAGAGGAGGGTGGGAGAGAAGGAGAGGGTGATA
CGAGAGACCTGCTGCTGGTTGAGCTGGAGGCACCTGTGGGGGCACATAAG
GGTGTTTTGGGGGCCATCGAGGCTGTCAAGAACGCTGCTGCAGTTCTGCA
AGAgtaagaagggaggggagggaggggagggaggggaagatgggacggga
gggaacatgcttagggcgatagagagtgtacgcggcggaacagcgatggt
tagaagggagggagggaggaagggagggagggactgaaggtgtgttctgg
gggtcatggggactgcctcgtacacattgattcaaccaaagtaaggaggg
agggagggagtgagagagagagggagggaggggatgagcgaggggaggga
aggatagaaaggtttaccagcaacctgatatgacttccttacgtactcac
ttctcttttctccacccgcgcttacacatatcttaccctaatagCTTTAT
CGTCGTCCGGCCGAGGAAGTCTGGGTGA
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protein sequence of NO25G00680.1

>NO25G00680.1-protein ID=NO25G00680.1-protein|Name=NO25G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MDNAGHDERCAVIQAVSHRNELPQLLNFLRATCIDALLQESWVSRETVLT
AATADRRQRAVTLKDEYVEPVVSSTESPGMHLRLRGSVQLRQQEEEEGKD
EEEEMERPEDEDDVWKKRDIRSSAEALIRRRVTTPVHGEEIEEEDNAEVE
EDVARNGTNRREKGVEAFMQFQGCVPRSSALLKRGIRCQFTRDVRLAVFT
VVVGQQQQQQQQQVMIGGEGYPLGIGSGPTEEEGGREGEGDTRDLLLVEL
EAPVGAHKGVLGAIEAVKNAAAVLQDFIVVRPRKSG*
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Synonyms
Publications