NO25G00680.1, NO25G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00680.1
Unique NameNO25G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr25:186911..188338 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:186911..188338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00680.1 vs.
Match: EWM21614.1 (hypothetical protein Naga_100012g68 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 2.500e-52
Identity = 147/297 (49.49%), Postives = 181/297 (60.94%), Query Frame = 0 
Query:    7 DERCAVIQAVSHRNELPQLLNFLRATCIDALLQESWVSRETVLTAATADRRQRAVTLKDEYVEPVVSSTESPGMHLRLRGSVQLRQQ-------EEEEGKDEEEEMERPEDEDDV--WKKRDIRSSAEALIRRRVTTPVHGEEIEEEDNAEVEED-----------------VARN--GTNRREKGVEAFMQFQGCVPRSSALLKRGIRCQFTRDVRLAVFTVVVGQQQQQQQQQVMIGGEGYPLGIGSGPTEEEGGREGEGDTRDLLLVELEAPVGAHKGVLGAIEAVKNAAAVLQ 276
            DERCAVIQ +SHR+ELP+LL+FLRA C+D LLQESWVSRE VL  A+ DRR+RAVTL+DE++E V SSTESP +HLRL+GS   RQQ       E   G      M+  E    V  +++RD+RSSAE LIR R+TTPV+GE++  E   E EED                 VAR     N+ E   E F++FQGC  +S  LLKRGIRCQ T  VR+++F +  GQQ+        + G G             GG EG+    DLL VELEAPVGAH  VL +IEAVK AAA L+
Sbjct:    6 DERCAVIQGISHRSELPKLLSFLRAACLDPLLQESWVSREKVLAPASIDRRRRAVTLRDEFIERVSSSTESPHLHLRLKGS--CRQQNGGSTGFEGGAGLGGRRGMKGRERTQRVLMYEERDVRSSAEVLIRHRITTPVYGEDVAGE---EPEEDGGAGRGAGAKKERATTTVARAEVARNQEEGAFETFLRFQGCSVQSRELLKRGIRCQLTEGVRISLFRIERGQQE--------LSGTG-------------GGGEGDDAAMDLLFVELEAPVGAHGSVLASIEAVKEAAAFLR 276
The following BLAST results are available for this feature:
BLAST of NO25G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21614.12.500e-5249.49hypothetical protein Naga_100012g68 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00680NO25G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00680.1NO25G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00680.1.cds1NO25G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00680.1.cds2NO25G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00680.1.cds3NO25G00680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00680.1.cds4NO25G00680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00680.1 ID=NO25G00680.1|Name=NO25G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGGACAACGCCGGTCATGACGAGCGCTGCGCGGTCATTCAAGCCGTCTC
GCATCGAAACGAGCTTCCTCAGCTTCTCAATTTTCTCCGAGCTACCTGTA
TCGACGCCCTTCTGCAAGAGTCCTGGGTGAGCCGAGAAACTGTCCTGACA
GCAGCGACGGCAGACAGGAGACAACGTGCTGTGACATTGAAAGATGAGTA
TGTGGAGCCTGTGGTGAGCAGCACAGAGAGCCCCGGGATGCATTTGCGTT
TGAGGGGATCAGTTCAATTGCGGCAGCAGGAGGAGGAGGAGGGGAAAGAC
GAGGAGGAGGAGATGGAAAGGCCAGAAGATGAGGACGATGTATGGAAAAA
GCGGGACATTCGGTCGAGCGCTGAGGCATTAATTCGTCGCCGCGTGACGA
CACCTGTACATGGAGAGGAAATCGAGGAGGAGGACAATGCGGAGGTCGAG
GAGGACGTGGCACGAAACGGCACCAACAGGAGGGAAAAGGGGGTAGAAGC
GTTCATGCAGTTTCAGGGGTGTGTGCCTCGCTCTTCAGCACTGTTGAAGA
GAGGGATTAGATGTCAGTTTACCAGAGATGTTCGTTTGGCCGTCTTTACT
GTGGTTGTTGGACAGCAGCAGCAGCAGCAGCAGCAGCAGGTGATGATTGG
AGGGGAGGGGTACCCGCTTGGCATCGGCAGCGGTCCCACAGAAGAGGAGG
GTGGGAGAGAAGGAGAGGGTGATACGAGAGACCTGCTGCTGGTTGAGCTG
GAGGCACCTGTGGGGGCACATAAGGGTGTTTTGGGGGCCATCGAGGCTGT
CAAGAACGCTGCTGCAGTTCTGCAAGACTTTATCGTCGTCCGGCCGAGGA
AGTCTGGGTGA
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protein sequence of NO25G00680.1

>NO25G00680.1-protein ID=NO25G00680.1-protein|Name=NO25G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MDNAGHDERCAVIQAVSHRNELPQLLNFLRATCIDALLQESWVSRETVLT
AATADRRQRAVTLKDEYVEPVVSSTESPGMHLRLRGSVQLRQQEEEEGKD
EEEEMERPEDEDDVWKKRDIRSSAEALIRRRVTTPVHGEEIEEEDNAEVE
EDVARNGTNRREKGVEAFMQFQGCVPRSSALLKRGIRCQFTRDVRLAVFT
VVVGQQQQQQQQQVMIGGEGYPLGIGSGPTEEEGGREGEGDTRDLLLVEL
EAPVGAHKGVLGAIEAVKNAAAVLQDFIVVRPRKSG*
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mRNA from alignment at chr25:186911..188338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00680.1 ID=NO25G00680.1|Name=NO25G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at chr25:186911..188338- (Nannochloropsis oceanica)
ATGGACAACGCCGGTCATGACGAGCGCTGCGCGGTCATTCAAGCCGTCTC
GGTGCGTCATGATAGCTGCTATACCGTCCCACCGTTGCCCTTCACCCTCC
CTCCCCGTCACCCCACACCCCTCCCTCCCCGTCACCCCACACCCCTCCCT
CCCCTCCCTCCCCTCCCTCCCCTCCCTCTTTCCCACCCCCCCAGCATCGA
AACGAGCTTCCTCAGCTTCTCAATTTTCTCCGAGCTACCTGTATCGACGC
CCTTCTGCAAGAGTCCTGGGTGAGCCGAGAAACTGTCCTGACAGCAGCGA
CGGCAGACAGGAGACAACGTGCTGTGACATTGAAAGATGAGTATGTGGAG
CCTGTGGTGAGCAGCACAGAGAGCCCCGGGATGCATTTGCGTTTGAGGGG
ATCAGTTCAATTGCGGCAGCAGGAGGAGGAGGAGGGGAAAGACGAGGAGG
AGGAGATGGAAAGGCCAGAAGATGAGGACGATGTATGGAAAAGTAGGGGC
CGGAGGAAAGGAGGGGGGAAGGGAGGGAGAAAGGGGGGAGGAAGGGAATG
GCTAGGCGAGTGGTGGTGTACGAAGAGCGGGACATTCGGTCGAGCGCTGA
GGCATTAATTCGTCGCCGCGTGACGACACCTGTACATGGAGAGGAAATCG
AGGAGGAGGACAATGCGGAGGTCGAGGAGGACGTGGCACGAAACGGCACC
AACAGGAGGGAAAAGGGGGTAGAAGCGTTCATGCAGTTTCAGGGGTGTGT
GCCTCGCTCTTCAGCACTGTTGAAGAGAGGGATTAGATGTCAGTTTACCA
GAGATGTTCGTTTGGCCGTCTTTACTGTGGTTGTTGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGGTGATGATTGGAGGGGAGGGGTACCCGCTTGGCAT
CGGCAGCGGTCCCACAGAAGAGGAGGGTGGGAGAGAAGGAGAGGGTGATA
CGAGAGACCTGCTGCTGGTTGAGCTGGAGGCACCTGTGGGGGCACATAAG
GGTGTTTTGGGGGCCATCGAGGCTGTCAAGAACGCTGCTGCAGTTCTGCA
AGAGTAAGAAGGGAGGGGAGGGAGGGGAGGGAGGGGAAGATGGGACGGGA
GGGAACATGCTTAGGGCGATAGAGAGTGTACGCGGCGGAACAGCGATGGT
TAGAAGGGAGGGAGGGAGGAAGGGAGGGAGGGACTGAAGGTGTGTTCTGG
GGGTCATGGGGACTGCCTCGTACACATTGATTCAACCAAAGTAAGGAGGG
AGGGAGGGAGTGAGAGAGAGAGGGAGGGAGGGGATGAGCGAGGGGAGGGA
AGGATAGAAAGGTTTACCAGCAACCTGATATGACTTCCTTACGTACTCAC
TTCTCTTTTCTCCACCCGCGCTTACACATATCTTACCCTAATAGCTTTAT
CGTCGTCCGGCCGAGGAAGTCTGGGTGA
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Coding sequence (CDS) from alignment at chr25:186911..188338-

>NO25G00680.1 ID=NO25G00680.1|Name=NO25G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr25:186911..188338- (Nannochloropsis oceanica)
ATGGACAACGCCGGTCATGACGAGCGCTGCGCGGTCATTCAAGCCGTCTC
GCATCGAAACGAGCTTCCTCAGCTTCTCAATTTTCTCCGAGCTACCTGTA
TCGACGCCCTTCTGCAAGAGTCCTGGGTGAGCCGAGAAACTGTCCTGACA
GCAGCGACGGCAGACAGGAGACAACGTGCTGTGACATTGAAAGATGAGTA
TGTGGAGCCTGTGGTGAGCAGCACAGAGAGCCCCGGGATGCATTTGCGTT
TGAGGGGATCAGTTCAATTGCGGCAGCAGGAGGAGGAGGAGGGGAAAGAC
GAGGAGGAGGAGATGGAAAGGCCAGAAGATGAGGACGATGTATGGAAAAA
GCGGGACATTCGGTCGAGCGCTGAGGCATTAATTCGTCGCCGCGTGACGA
CACCTGTACATGGAGAGGAAATCGAGGAGGAGGACAATGCGGAGGTCGAG
GAGGACGTGGCACGAAACGGCACCAACAGGAGGGAAAAGGGGGTAGAAGC
GTTCATGCAGTTTCAGGGGTGTGTGCCTCGCTCTTCAGCACTGTTGAAGA
GAGGGATTAGATGTCAGTTTACCAGAGATGTTCGTTTGGCCGTCTTTACT
GTGGTTGTTGGACAGCAGCAGCAGCAGCAGCAGCAGCAGGTGATGATTGG
AGGGGAGGGGTACCCGCTTGGCATCGGCAGCGGTCCCACAGAAGAGGAGG
GTGGGAGAGAAGGAGAGGGTGATACGAGAGACCTGCTGCTGGTTGAGCTG
GAGGCACCTGTGGGGGCACATAAGGGTGTTTTGGGGGCCATCGAGGCTGT
CAAGAACGCTGCTGCAGTTCTGCAAGACTTTATCGTCGTCCGGCCGAGGA
AGTCTGGGTGA
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Synonyms
Publications