NO25G00620, NO25G00620 (gene) Nannochloropsis oceanica

Overview
NameNO25G00620
Unique NameNO25G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr25:173695..174909 +

Link to JBrowse

Properties
Property NameValue
Description40s ribosomal protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:173695..174909 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036401RPS17e-like_sf
IPR001210Ribosomal_S17e
Homology
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: EWM21578.1 (40s ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 1.200e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 109
            MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI
Sbjct:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: CBJ26577.1 (40S ribosomal protein S17 [Ectocarpus siliculosus])

HSP 1 Score: 186.8 bits (473), Expect = 3.800e-44
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGFKDILSI 117
            MGVRTKTVKKSAR IIEKYYSRLTMDFHTNKRV DEVA +PSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS IEQE  ++D D +DL++ + FKD+  I
Sbjct:    1 MGVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDALDFKDLAGI 116
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: XP_009035952.1 (hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens] >EGB09926.1 hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens])

HSP 1 Score: 177.2 bits (448), Expect = 3.000e-41
Identity = 88/116 (75.86%), Postives = 104/116 (89.66%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGFKDILSI 117
            MGVRTKTVK+SAR+I+EKYYSRL +DFHTNKRV DEVA VPSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS I+Q+  E+D D +++++ + FKD+  I
Sbjct:    1 MGVRTKTVKRSARLIVEKYYSRLGVDFHTNKRVCDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIDQDFVEIDPDTKEMLDALDFKDLPGI 116
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: XP_002178961.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49659.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 174.5 bits (441), Expect = 2.000e-40
Identity = 85/110 (77.27%), Postives = 99/110 (90.00%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGF 111
            MGVRTKTVKKSAR I+EKYY RLT+DFHTNKR++D+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQE  ++D D RDL+E +G+
Sbjct:    1 MGVRTKTVKKSARTIVEKYYPRLTVDFHTNKRIIDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQETIQIDPDTRDLLESLGY 110
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: OEU09531.1 (ribosomal protein S17 component of cytosolic 80S ribosome and 40S small subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 172.6 bits (436), Expect = 7.400e-40
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGF 111
            MGVRTKTVKKSAR I+E YY RLT+DFHTNKR+VDEVA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQ+   +D D RD++E +GF
Sbjct:    1 MGVRTKTVKKSARTIVENYYPRLTLDFHTNKRIVDEVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQDTITIDPDTRDMLESLGF 110
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: GAX11360.1 (small subunit ribosomal protein S17e [Fistulifera solaris])

HSP 1 Score: 171.8 bits (434), Expect = 1.300e-39
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGF 111
            MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKRVVD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E  ++D D RD++E +GF
Sbjct:    1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRVVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESLGF 110
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: GAX20462.1 (small subunit ribosomal protein S17e [Fistulifera solaris])

HSP 1 Score: 171.4 bits (433), Expect = 1.700e-39
Identity = 83/110 (75.45%), Postives = 99/110 (90.00%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGF 111
            MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKR+VD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E  ++D D RD++E +GF
Sbjct:    1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRIVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESLGF 110
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: XP_002296774.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86975.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 168.7 bits (426), Expect = 1.100e-38
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0 
Query:    3 VRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGF 111
            VRTKTVKKSAR I+EKYY RLT+DFHTNKR++DE+A  PSKRMRNKIAGF THLMKRI KGPVR ISLKLQEEERERRLDFVPEVS +EQE   +D++ RDL+E +G+
Sbjct:    1 VRTKTVKKSARTIVEKYYPRLTLDFHTNKRIIDEIAITPSKRMRNKIAGFTTHLMKRIAKGPVRNISLKLQEEERERRLDFVPEVSALEQETIAIDRETRDLLESMGY 108
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: OQR87726.1 (40S ribosomal protein S17 [Achlya hypogyna])

HSP 1 Score: 167.5 bits (423), Expect = 2.400e-38
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 109
            MGVRTKTVK+SA  IIEKYYSRLT+DF +NKRV DEVA +PSKRMRNKIAG++THLMKRIQ+GPVRGISLKLQEEERERRLDFVPEVS I+ E  E+D D RDL+ H+
Sbjct:    1 MGVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAIDVENIEIDNDTRDLLAHL 108
[Close]
BLAST of NO25G00620 vs. NCBI_GenBank
Match: XP_005708707.1 (40S ribosomal protein S17 [Galdieria sulphuraria] >EME32187.1 40S ribosomal protein S17 [Galdieria sulphuraria])

HSP 1 Score: 166.0 bits (419), Expect = 7.000e-38
Identity = 81/114 (71.05%), Postives = 102/114 (89.47%), Query Frame = 0 
Query:    3 VRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIGFKDILSI 117
            VRTKTVKKSARVIIEKYYS+LT+DF TNKR+ DEVA +PSKR+RNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERR+DFVPE+S I+  + ++D   ++++E +G+K++ ++
Sbjct:    4 VRTKTVKKSARVIIEKYYSKLTLDFQTNKRICDEVALIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEISAIDVGEVKIDPVTKNMLESLGYKNLPNV 117
The following BLAST results are available for this feature:
BLAST of NO25G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21578.11.200e-50100.0040s ribosomal protein [Nannochloropsis gaditana][more]
CBJ26577.13.800e-4481.0340S ribosomal protein S17 [Ectocarpus siliculosus][more]
XP_009035952.13.000e-4175.86hypothetical protein AURANDRAFT_36910 [Aureococcus... [more]
XP_002178961.12.000e-4077.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU09531.17.400e-4077.27ribosomal protein S17 component of cytosolic 80S r... [more]
GAX11360.11.300e-3976.36small subunit ribosomal protein S17e [Fistulifera ... [more]
GAX20462.11.700e-3975.45small subunit ribosomal protein S17e [Fistulifera ... [more]
XP_002296774.11.100e-3876.85predicted protein, partial [Thalassiosira pseudona... [more]
OQR87726.12.400e-3878.7040S ribosomal protein S17 [Achlya hypogyna][more]
XP_005708707.17.000e-3871.0540S ribosomal protein S17 [Galdieria sulphuraria] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004371NSK004371Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00620.1NO25G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603055gene_8547Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g76gene8848Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00620.1NO25G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00620 ID=NO25G00620|Name=NO25G00620|organism=Nannochloropsis oceanica|type=gene|length=1215bp
ACAGGACCCTTCTGTTTCGTGAAATCACCAGTCAATCATGgtacgttttt
aggctgttgggtgggtggatggtcatcgcaatgcaagtagcgcgtcttct
ccgtataccgcgtgcccttcgtgtgtcccttcgttgtcctgtgcttaacc
catcagcaacccaattcacagataatatgtagtatgtgtaacttcacgct
tggacgcgtggcctccacgggttgggtttgtggatgtcgtcgcttgtctc
cctctttccttccttctgtgcatcatcatcccaccccaccgcacttgcct
ccttttcacccacgattcattctacgcaacgataaacatacgctaaccct
ctcctctccttctatccccaccaccaaccaacagGGTGTGCGTACCAAGA
CCGTGAAAAAGTCGGCCCGAGTCATCATCGAGAAGTACTACTCCCGCCTG
ACCATGGACTTCCACACCAACAAGCGCGTCGTCGACGAGGTGGCTGAGGT
CCCCTCCAAGCGCATGCGCAACAAGATCGCCGGTTTCGTCACGCACCTGA
TGAAGCGTATCCAGAAGGGCCCCGTGCGTGGGATCTCCCTCAAGCTGCAG
GAGGAGGAGCGAGAACGCCGATTGGACTTCGTGCCCGAGGTGTCGCTGAT
CGAGCAGGAGCAACCGGAGGTGGACCAGGACTTGCGGGATTTGATGGAGC
ACATTGGTTTCAAGGACATCCTGTCCATTTAGACTAGTTTGCTGCAATAG
AAGGGGTAGGAGAAGGGGGCGAACGCCGTGACAAGGCAAGAAAAATAGAC
GCGGCCCAATACACTTGTCAGAAAAACGTTGTAGGGCAGGGGCCGCCATG
AGCAGTACGATACTCGAGAAGGGGAAAATGTTGGGAGGGAGCTTGGAAAG
ATGATCAGGTATAGAGAAATGACATCACGCTGCAGCGGTGAAGAGAAAGA
AGGGGAGGGTGATACCTATTTTTTGACACTGATGTGTGTGGTTTTCTTCA
TTTCATTTCTTGGGATCACGAATCTTATTGAAAACGAAGGAGGGGATTCT
CGAGCGTACCCTTGAGGAAGGAGGTTGGGTACAGTCTCTTTTTGCGTATA
AAGAAGAGACCGTCAACCTGTCGTGTCTAATTTGCTAGGCCTTATGCTGC
CTCGCGCACCCGCACGGGTTAAAACACAAAGAAGAAAAAAAGAGAATAAC
AATATTTGAGGCGTA
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protein sequence of NO25G00620.1

>NO25G00620.1-protein ID=NO25G00620.1-protein|Name=NO25G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIA
GFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQD
LRDLMEHIGFKDILSI*
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Synonyms
Publications