NO25G00620.1, NO25G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00620.1
Unique NameNO25G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length871
Alignment locationchr25:173695..174909 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:173695..174909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00620.1 vs.
Match: EWM21578.1 (40s ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 1.200e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 109
            MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI
Sbjct:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
The following BLAST results are available for this feature:
BLAST of NO25G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21578.11.200e-50100.0040s ribosomal protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00620NO25G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00620.1NO25G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00620.1.cds1NO25G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00620.1.cds2NO25G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00620.1 ID=NO25G00620.1|Name=NO25G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
ACAGGACCCTTCTGTTTCGTGAAATCACCAGTCAATCATGGGTGTGCGTA
CCAAGACCGTGAAAAAGTCGGCCCGAGTCATCATCGAGAAGTACTACTCC
CGCCTGACCATGGACTTCCACACCAACAAGCGCGTCGTCGACGAGGTGGC
TGAGGTCCCCTCCAAGCGCATGCGCAACAAGATCGCCGGTTTCGTCACGC
ACCTGATGAAGCGTATCCAGAAGGGCCCCGTGCGTGGGATCTCCCTCAAG
CTGCAGGAGGAGGAGCGAGAACGCCGATTGGACTTCGTGCCCGAGGTGTC
GCTGATCGAGCAGGAGCAACCGGAGGTGGACCAGGACTTGCGGGATTTGA
TGGAGCACATTGGTTTCAAGGACATCCTGTCCATTTAGACTAGTTTGCTG
CAATAGAAGGGGTAGGAGAAGGGGGCGAACGCCGTGACAAGGCAAGAAAA
ATAGACGCGGCCCAATACACTTGTCAGAAAAACGTTGTAGGGCAGGGGCC
GCCATGAGCAGTACGATACTCGAGAAGGGGAAAATGTTGGGAGGGAGCTT
GGAAAGATGATCAGGTATAGAGAAATGACATCACGCTGCAGCGGTGAAGA
GAAAGAAGGGGAGGGTGATACCTATTTTTTGACACTGATGTGTGTGGTTT
TCTTCATTTCATTTCTTGGGATCACGAATCTTATTGAAAACGAAGGAGGG
GATTCTCGAGCGTACCCTTGAGGAAGGAGGTTGGGTACAGTCTCTTTTTG
CGTATAAAGAAGAGACCGTCAACCTGTCGTGTCTAATTTGCTAGGCCTTA
TGCTGCCTCGCGCACCCGCACGGGTTAAAACACAAAGAAGAAAAAAAGAG
AATAACAATATTTGAGGCGTA
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protein sequence of NO25G00620.1

>NO25G00620.1-protein ID=NO25G00620.1-protein|Name=NO25G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIA
GFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQD
LRDLMEHIGFKDILSI*
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mRNA from alignment at chr25:173695..174909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00620.1 ID=NO25G00620.1|Name=NO25G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr25:173695..174909+ (Nannochloropsis oceanica)
ACAGGACCCTTCTGTTTCGTGAAATCACCAGTCAATCATGGTACGTTTTT
AGGCTGTTGGGTGGGTGGATGGTCATCGCAATGCAAGTAGCGCGTCTTCT
CCGTATACCGCGTGCCCTTCGTGTGTCCCTTCGTTGTCCTGTGCTTAACC
CATCAGCAACCCAATTCACAGATAATATGTAGTATGTGTAACTTCACGCT
TGGACGCGTGGCCTCCACGGGTTGGGTTTGTGGATGTCGTCGCTTGTCTC
CCTCTTTCCTTCCTTCTGTGCATCATCATCCCACCCCACCGCACTTGCCT
CCTTTTCACCCACGATTCATTCTACGCAACGATAAACATACGCTAACCCT
CTCCTCTCCTTCTATCCCCACCACCAACCAACAGGGTGTGCGTACCAAGA
CCGTGAAAAAGTCGGCCCGAGTCATCATCGAGAAGTACTACTCCCGCCTG
ACCATGGACTTCCACACCAACAAGCGCGTCGTCGACGAGGTGGCTGAGGT
CCCCTCCAAGCGCATGCGCAACAAGATCGCCGGTTTCGTCACGCACCTGA
TGAAGCGTATCCAGAAGGGCCCCGTGCGTGGGATCTCCCTCAAGCTGCAG
GAGGAGGAGCGAGAACGCCGATTGGACTTCGTGCCCGAGGTGTCGCTGAT
CGAGCAGGAGCAACCGGAGGTGGACCAGGACTTGCGGGATTTGATGGAGC
ACATTGGTTTCAAGGACATCCTGTCCATTTAGACTAGTTTGCTGCAATAG
AAGGGGTAGGAGAAGGGGGCGAACGCCGTGACAAGGCAAGAAAAATAGAC
GCGGCCCAATACACTTGTCAGAAAAACGTTGTAGGGCAGGGGCCGCCATG
AGCAGTACGATACTCGAGAAGGGGAAAATGTTGGGAGGGAGCTTGGAAAG
ATGATCAGGTATAGAGAAATGACATCACGCTGCAGCGGTGAAGAGAAAGA
AGGGGAGGGTGATACCTATTTTTTGACACTGATGTGTGTGGTTTTCTTCA
TTTCATTTCTTGGGATCACGAATCTTATTGAAAACGAAGGAGGGGATTCT
CGAGCGTACCCTTGAGGAAGGAGGTTGGGTACAGTCTCTTTTTGCGTATA
AAGAAGAGACCGTCAACCTGTCGTGTCTAATTTGCTAGGCCTTATGCTGC
CTCGCGCACCCGCACGGGTTAAAACACAAAGAAGAAAAAAAGAGAATAAC
AATATTTGAGGCGTA
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Coding sequence (CDS) from alignment at chr25:173695..174909+

>NO25G00620.1 ID=NO25G00620.1|Name=NO25G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at chr25:173695..174909+ (Nannochloropsis oceanica)
ATGGGTGTGCGTACCAAGACCGTGAAAAAGTCGGCCCGAGTCATCATCGA
GAAGTACTACTCCCGCCTGACCATGGACTTCCACACCAACAAGCGCGTCG
TCGACGAGGTGGCTGAGGTCCCCTCCAAGCGCATGCGCAACAAGATCGCC
GGTTTCGTCACGCACCTGATGAAGCGTATCCAGAAGGGCCCCGTGCGTGG
GATCTCCCTCAAGCTGCAGGAGGAGGAGCGAGAACGCCGATTGGACTTCG
TGCCCGAGGTGTCGCTGATCGAGCAGGAGCAACCGGAGGTGGACCAGGAC
TTGCGGGATTTGATGGAGCACATTGGTTTCAAGGACATCCTGTCCATTTA
G
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Synonyms
Publications