NO25G00590, NO25G00590 (gene) Nannochloropsis oceanica

Overview
NameNO25G00590
Unique NameNO25G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2645
Alignment locationchr25:165497..168141 +

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Properties
Property NameValue
DescriptionBrca1-associated protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:165497..168141 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Homology
BLAST of NO25G00590 vs. NCBI_GenBank
Match: EWM21576.1 (brca1-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 3.000e-55
Identity = 234/784 (29.85%), Postives = 318/784 (40.56%), Query Frame = 0
Query:   49 LPPIPGYEWVQVRETWGRLHLYRHAPRTYAMLQHPHHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGLHTPFYPARLSTVLLLGCGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVLELLEGLAMIAPRIAFVHIIR-ERHRGGTSTHALVTLDSVEAAQGWVALLGDDQTNRDLVMGGQLVYASGVVMVNEPRSDALLCCLKSLVDD-AGPADAAAATGARFGGESGYPSLDELSQLGTVQVQGPGGGSVSSARCLALGPPADALALLSSLVLFVGKVEEGKEE--KRAYVMENEGGGGVESNEVGSMDNSNSXXXXXXXSSRSAIEEEGEGGWEVDGSMALFSQGLDSYLAELPTCLQCLNRLDPVAVGVALGIPPLPGTAAXXXXXXXXXXXXXXXASFLDDRHSSNNVTVKSYICSGVASSSCATCQKVQIYA------NLKQKRKRTL--RGFEXXXXXXXXXXXXXXXXMSRRKGVADDCG-----------------CDG-------GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXME------KGPQGKLDGLGAEYSALLMSQLEEQKHYYERLLAKTAAELAHSVCQ-DEMPEGVRREADQVRGQIARLEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAKTALDTEVADLEAQINDLSFFLRTKTAVQESELEGGGVMI 790
            L  +PGYE VQ+ ET GRL LYRHAPR +      H  L                                                              +     PF PARL TVLLL C  +                                            +S  ++L+ L  +APRI F+ I+R E HR     HAL+T+DS+ A    +A L +     D ++ GQ+++ S +V+VN+ +S+ LL  L  ++ D  G       T      +S   ++  LS L TVQ++GP    +     L  G   DALAL  SL+L V       E+   R   M+ E GG ++S  +   ++SN                EG+   E D ++ LFS+GL  YLAELPTC  CL+RLDPV+VG  LG        A                        S   +      S  +SS C  C KVQI+A      N ++ +K       F                 +     +   CG                 C G        TG                                               E      KG +GK DGL AEYSALL+SQLEEQ  Y+ERLL K A + A ++CQ DE+ +  RREA ++R  I ++EE+H   ME LR  EE AR+MR RNQ LL +QK+   HL++LR  I+ AK     ++ +LEAQI+DL FFLR+K AVQ SELEGG +++
Sbjct:  103 LAHLPGYESVQIYETLGRLRLYRHAPRNFF-----HRSLATGTRTDGDKVKDAYGDSYFGRQSGHRQASDKGGRAAKSGRDNERSYKAERLEGGSGDAAHEDEWHFLPFRPARLFTVLLLDCQNT----DCASGFNYANAKEQHDGTQLPDIHLESGHLPEQSCHAVHAVSARQILQSLTEMAPRIRFIQIVRDEVHR---RVHALITVDSILAVDRLIAFLREP----DALLQGQILFVSSIVLVNDQKSEELLSSLDLVIKDVTGSRTCVQETSFMQSKKSDPLNIAHLSHLDTVQLRGPHEKDICPVYSLVFGDYLDALALSQSLILSVRDAGFISEDLFGRNLQMQPE-GGEMQSISLNIKNDSNI---------------EGDEEDEYD-NIDLFSRGLLCYLAELPTCHGCLSRLDPVSVGTYLG-------PARSDDKFSSIQECDTGVEISGKISGSQEYSAGKRSPSRKSSSMCRICNKVQIHAMNQEKCNFQRSKKEGTPDTAFNGSKMVTPVSLTCYTCNIPENLWICLLCGHVGCGRYTAEHAKRHFHCCGHIFSLELATGRVWDYVEDMFVHSSEFEPGGGLSPTSALSESHAIADRIHGYREDNLHEVSCRKVKGARGKFDGLEAEYSALLLSQLEEQNAYHERLLTKAATDFAQNICQDDELSDDERREAFKIRSDIQKMEEDHSCFMEELRRAEESARKMRVRNQELLCDQKEGKFHLSNLRSNITSAKIRQKHDIQELEAQISDLLFFLRSKEAVQSSELEGGDLIV 846          
BLAST of NO25G00590 vs. NCBI_GenBank
Match: CBN75599.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9 bits (167), Expect = 8.000e-8
Identity = 43/142 (30.28%), Postives = 82/142 (57.75%), Query Frame = 0
Query:  639 KLDGLGAEYSALLMSQLEEQKHYYERLLAKTAA--ELAHSVCQDEMPEGVRREADQVRGQIARLEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAKTALDTEVADLEAQINDLSFFLRTKTAVQ 779
            K+  +  EY AL+  QL+EQ+ Y+E L+A   A    A++  ++ + +  R E  ++R  I  L  ++  ++++LR +EE AR++R  N+GL+ EQ+        L +   + +   + ++++LE Q+ DL FFL+T+  V+
Sbjct:  807 KMAVVSREYEALVARQLQEQQRYFEDLIATAVAVDAEANAPVEEVLTDEERAEVGKLRQAIDELSGKYEGILDSLRTDEETARRVRSENRGLVSEQRSQKREEGRLAEEARQTRRQCEQQMSELEGQMQDLLFFLKTQEKVK 948          
BLAST of NO25G00590 vs. NCBI_GenBank
Match: CCA16524.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.9 bits (159), Expect = 6.800e-7
Identity = 50/153 (32.68%), Postives = 82/153 (53.59%), Query Frame = 0
Query:  639 KLDGLGAEYSALLMSQLEEQKHYYERLLAKTAAELAHSVCQDEMPEGVR--READQVRGQIARLEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAKTALDTEVADLEAQINDLSFFLRTKTAVQES----ELEGG 786
            KL+ L  EY+ LL SQLEEQ+ YYERLLA  A+E  +++    + + V+  R+++++  Q +   EE L  +  L             N+ L++ Q Q  + +  L +     +      +ADLEAQ+ DL F+L T++ V+ S    E++GG
Sbjct:  362 KLEKLAVEYNWLLKSQLEEQRLYYERLLA-NASECNNTLATTTLEQEVKHLRKSNEILQQKSSKSEEELDFVREL-------------NKSLIENQHQWKARIRELEEQKRNTEKENSLRIADLEAQVRDLMFYLDTQSKVERSAYKNEIQGG 500          
BLAST of NO25G00590 vs. NCBI_GenBank
Match: XP_024571968.1 (conserved hypothetical protein [Plasmopara halstedii] >CEG35599.1 conserved hypothetical protein [Plasmopara halstedii])

HSP 1 Score: 65.9 bits (159), Expect = 6.800e-7
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 0
Query:  633 EKGPQGKLDGLGAEYSALLMSQLEEQKHYYERLLAKTAAELAHSVCQDEMPEGVRRE-ADQVRGQIARLEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAKTALDTEVADLEAQINDLSFFLRTKTAVQES----ELEGGGVMIGHTVT 795
            E+    KL+ L  EY+ LL SQLEEQ+ YYERLLA+             + EG  R+  +    +  +L++ +L L E  ++ EE    +R  N+ L++ QKQ    + +L  A ++ +      V DLE+Q+ DL F+L T+  V++S    +++GG + I    T
Sbjct:  323 EEDEHRKLEKLAVEYNFLLKSQLEEQRLYYERLLAR-------------VEEGKSRQLLNAHEHERKQLKKTNLVLEEKTKKLEEELTFVRELNKSLIENQKQWKERVRALEDANARIERDTALRVGDLESQVRDLMFYLDTQNKVEQSVHCEDIKGGTIEIESEAT 476          
The following BLAST results are available for this feature:
BLAST of NO25G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21576.13.000e-5529.85brca1-associated protein [Nannochloropsis gaditana... [more]
CBN75599.18.000e-830.28conserved unknown protein [Ectocarpus siliculosus][more]
CCA16524.16.800e-732.68conserved hypothetical protein [Albugo laibachii N... [more]
XP_024571968.16.800e-732.34conserved hypothetical protein [Plasmopara halsted... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004374NSK004374Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00590.1NO25G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532709gene_8544Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g79gene8851Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00590.1NO25G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00590 ID=NO25G00590|Name=NO25G00590|organism=Nannochloropsis oceanica|type=gene|length=2645bp
ATGGCGTCTCCCTCCTCCTTCCTCGTGCTGGTGGCGTCACACCGGAGGCG
CCGACGGAAACCAACTACAAAAAAAGAGGAGGACGCAAAGCAGCAGGAGA
AGGAGGAAGAGGAGGAAGCTGAGCCATGCAGCGCATCAGGAGTACTGCCT
CCCATCCCCGGGTACGAATGGGTGCAGGTCCGCGAGACGTGGGGCCGTCT
ACACCTCTACCGGCACGCCCCACGTACCTACGCGATGCTGCAACACCCTC
ACCATCCCCTCCCACGCAGTAGAGGTGGTGGCGGAGGACAGGTAAGAGCT
ATTGCTGGGAATGACTCCCGATGGCGCAGTGGTAGTCTGAGCTTAAGTAC
GGATAGTGTGGATGGAAGCAGCAGCGGTAGCGGGTACTTTGTCGGGAGTG
GAGGAAGGGGGGCAAACTCGGGCGCCAGCACCGCACAGCAGGAGCAGGAA
AGTGGACTTCATACCCCTTTTTATCCAGCACGCTTGTCTACAGTTTTGTT
GCTGGGGTGCGGCAAGAGCAGTAGCAGTAGTAATAGCAGCAGGAGTGTAT
CCGAGGGCTGCGGGGCGGACCCCTCCTCTACCACTTCTCCGCCAGCGATT
TTTGCTGCCGCTGCTACTGCTGCTACTACTACTGCTACTACAACACCTAT
ACTATCAGTCCTGGAGCTTCTGGAAGGTCTCGCTATGATTGCACCGCGTA
TTGCCTTTGTCCACATAATAAGGGAACGACACAGAGGGGGCACCAGCACC
CATGCCCTCGTCACCTTAGACTCGGTGGAGGCAGCACAAGGATGGGTAGC
CTTGCTGGGGGACGATCAAACAAATAGGGATTTGGTCATGGGTGGACAGC
TCGTGTATGCCTCTGGGGTGGTGATGGTTAATGAACCACGAAGCGACGCG
TTGCTTTGCTGTCTGAAGAGCCTGGTGGACGACGCCGGGCCTGCAGACGC
TGCTGCAGCAACTGGCGCTCGTTTTGGTGGTGAGAGTGGTTATCCGAGTT
TAGACGAATTGTCGCAGCTGGGCACGGTGCAGGTGCAAGGGCCGGGGGGA
GGGAGCGTCAGCAGTGCACGTTGCCTTGCGCTAGGCCCGCCTGCAGACGC
GCTGGCTTTGTTAAGTTCCCTTGTCTTGTTTGTGGGTAAGGTGGAGGAAG
GGAAGGAGGAGAAGAGGGCGTATGTCATGGAGAATGAGGGCGGGGGAGGG
GTGGAGTCCAATGAAGTGGGTTCGATGGATAACAGCAATAGCTGCAGCAG
TAACGAGGTCAGCAGCAGTCGCAGCGCGATCGAGGAAGAGGGGGAGGGAG
GGTGGGAGGTTGACGGATCCATGGCTCTTTTTTCGCAGGGGCTGGACTCC
TACTTGGCAGAATTGCCGACGTGCTTGCAATGTCTCAACCGTCTCGATCC
TGTTGCCGTAGGGGTAGCCCTAGGTATCCCCCCTCTTCCCGGCACCGCTG
CTGCTGATGATGCTGCTGATGCTGCTGCTGCAGCTAGAATTGTTACTGCG
TCCTTCCTTGACGATAGACATAGCAGCAACAATGTGACCGTGAAAAGTTA
TATCTGCAGTGGTGTTGCATCCTCCTCATGCGCAACGTGTCAAAAAGTCC
AAATCTACGCCAACCTTAAGCAAAAACGAAAACGCACATTACGAGGCTTC
GAACGAGGAAGGGAAGGAGGGAGGGACGGGACACCCACCGCCACCGCCAC
AAgtactctccacactctcacctgcaacacgtgcggaattcccgaaaacc
tgtggatctgcctgttgtgtagtcacgtggggtgtgggcgctacacagcc
gagcacgccaaaatgcactttcatcaatcaggccatattttttcattaga
gctagccacggggagagtgtgggactacgttgaagatgtctttgtgcatg
caacgcagTGTCAAGGCGGAAGGGGGTGGCGGATGACTGCGGCTGCGATG
GGGGGACAGGCAAGGCGGGGGGGGTCGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAAGAGGAGGGGAAGATCGC
AGAGGAGGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGA
TGGAGAAGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGT
GCGCTGTTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATT
GTTGGCAAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGA
TGCCGGAGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCA
AGGTTGGAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGA
GGAGATGGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGC
AGAAGCAGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAG
GCCAAGACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAA
CGATTTATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGT
TGGAAGGGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCG
AGAGGGGGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA
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protein sequence of NO25G00590.1

>NO25G00590.1-protein ID=NO25G00590.1-protein|Name=NO25G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MASPSSFLVLVASHRRRRRKPTTKKEEDAKQQEKEEEEEAEPCSASGVLP
PIPGYEWVQVRETWGRLHLYRHAPRTYAMLQHPHHPLPRSRGGGGGQVRA
IAGNDSRWRSGSLSLSTDSVDGSSSGSGYFVGSGGRGANSGASTAQQEQE
SGLHTPFYPARLSTVLLLGCGKSSSSSNSSRSVSEGCGADPSSTTSPPAI
FAAAATAATTTATTTPILSVLELLEGLAMIAPRIAFVHIIRERHRGGTST
HALVTLDSVEAAQGWVALLGDDQTNRDLVMGGQLVYASGVVMVNEPRSDA
LLCCLKSLVDDAGPADAAAATGARFGGESGYPSLDELSQLGTVQVQGPGG
GSVSSARCLALGPPADALALLSSLVLFVGKVEEGKEEKRAYVMENEGGGG
VESNEVGSMDNSNSCSSNEVSSSRSAIEEEGEGGWEVDGSMALFSQGLDS
YLAELPTCLQCLNRLDPVAVGVALGIPPLPGTAAADDAADAAAAARIVTA
SFLDDRHSSNNVTVKSYICSGVASSSCATCQKVQIYANLKQKRKRTLRGF
ERGREGGRDGTPTATATMSRRKGVADDCGCDGGTGKAGGVEEEEEEEEEE
EEEEEKEEEEEGKIAEEDAEGEGGIRGRRGRMEKGPQGKLDGLGAEYSAL
LMSQLEEQKHYYERLLAKTAAELAHSVCQDEMPEGVRREADQVRGQIARL
EEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAK
TALDTEVADLEAQINDLSFFLRTKTAVQESELEGGGVMIGHTVTAAAPRG
GRGGRRRKGGGK*
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Synonyms
Publications