NO25G00590.1, NO25G00590.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G00590.1
Unique Name	NO25G00590.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2439
Alignment location	chr25:165497..168141 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:165497..168141 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO25G00590.1 vs.
Match: EWM21576.1 (brca1-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 1.100e-33
Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 0

Query:  631 RMEKGPQGKLDGLGAEYSALLMSQLEEQKHYYERLLAKTAAELAHSVCQD-EMPEGVRREADQVRGQIARLEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAKTALDTEVADLEAQINDLSFFLRTKTAVQESELEGGGVMIGHTVTAAAPRGGRGGRRRK 809
            R  KG +GK DGL AEYSALL+SQLEEQ  Y+ERLL K A + A ++CQD E+ +  RREA ++R  I ++EE+H   ME LR  EE AR+MR RNQ LL +QK+   HL++LR  I+ AK     ++ +LEAQI+DL FFLR+K AVQ SELEGG +++   +TA   R  + GRRR+
Sbjct:  687 RKVKGARGKFDGLEAEYSALLLSQLEEQNAYHERLLTKAATDFAQNICQDDELSDDERREAFKIRSDIQKMEEDHSCFMEELRRAEESARKMRVRNQELLCDQKEGKFHLSNLRSNITSAKIRQKHDIQELEAQISDLLFFLRSKEAVQSSELEGGDLIV-QGLTANPHRVSKHGRRRR 864

The following BLAST results are available for this feature:

BLAST of NO25G00590.1 vs.

BLAST of NO25G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21576.1	1.100e-33	52.51	brca1-associated protein [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G00590	NO25G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00590.1	NO25G00590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00590.1.cds1	NO25G00590.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00590.1.cds2	NO25G00590.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:165497..168141+
coding sequence from alignment at chr25:165497..168141+

mRNA sequence

>NO25G00590.1 ID=NO25G00590.1|Name=NO25G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp
ATGGCGTCTCCCTCCTCCTTCCTCGTGCTGGTGGCGTCACACCGGAGGCG
CCGACGGAAACCAACTACAAAAAAAGAGGAGGACGCAAAGCAGCAGGAGA
AGGAGGAAGAGGAGGAAGCTGAGCCATGCAGCGCATCAGGAGTACTGCCT
CCCATCCCCGGGTACGAATGGGTGCAGGTCCGCGAGACGTGGGGCCGTCT
ACACCTCTACCGGCACGCCCCACGTACCTACGCGATGCTGCAACACCCTC
ACCATCCCCTCCCACGCAGTAGAGGTGGTGGCGGAGGACAGGTAAGAGCT
ATTGCTGGGAATGACTCCCGATGGCGCAGTGGTAGTCTGAGCTTAAGTAC
GGATAGTGTGGATGGAAGCAGCAGCGGTAGCGGGTACTTTGTCGGGAGTG
GAGGAAGGGGGGCAAACTCGGGCGCCAGCACCGCACAGCAGGAGCAGGAA
AGTGGACTTCATACCCCTTTTTATCCAGCACGCTTGTCTACAGTTTTGTT
GCTGGGGTGCGGCAAGAGCAGTAGCAGTAGTAATAGCAGCAGGAGTGTAT
CCGAGGGCTGCGGGGCGGACCCCTCCTCTACCACTTCTCCGCCAGCGATT
TTTGCTGCCGCTGCTACTGCTGCTACTACTACTGCTACTACAACACCTAT
ACTATCAGTCCTGGAGCTTCTGGAAGGTCTCGCTATGATTGCACCGCGTA
TTGCCTTTGTCCACATAATAAGGGAACGACACAGAGGGGGCACCAGCACC
CATGCCCTCGTCACCTTAGACTCGGTGGAGGCAGCACAAGGATGGGTAGC
CTTGCTGGGGGACGATCAAACAAATAGGGATTTGGTCATGGGTGGACAGC
TCGTGTATGCCTCTGGGGTGGTGATGGTTAATGAACCACGAAGCGACGCG
TTGCTTTGCTGTCTGAAGAGCCTGGTGGACGACGCCGGGCCTGCAGACGC
TGCTGCAGCAACTGGCGCTCGTTTTGGTGGTGAGAGTGGTTATCCGAGTT
TAGACGAATTGTCGCAGCTGGGCACGGTGCAGGTGCAAGGGCCGGGGGGA
GGGAGCGTCAGCAGTGCACGTTGCCTTGCGCTAGGCCCGCCTGCAGACGC
GCTGGCTTTGTTAAGTTCCCTTGTCTTGTTTGTGGGTAAGGTGGAGGAAG
GGAAGGAGGAGAAGAGGGCGTATGTCATGGAGAATGAGGGCGGGGGAGGG
GTGGAGTCCAATGAAGTGGGTTCGATGGATAACAGCAATAGCTGCAGCAG
TAACGAGGTCAGCAGCAGTCGCAGCGCGATCGAGGAAGAGGGGGAGGGAG
GGTGGGAGGTTGACGGATCCATGGCTCTTTTTTCGCAGGGGCTGGACTCC
TACTTGGCAGAATTGCCGACGTGCTTGCAATGTCTCAACCGTCTCGATCC
TGTTGCCGTAGGGGTAGCCCTAGGTATCCCCCCTCTTCCCGGCACCGCTG
CTGCTGATGATGCTGCTGATGCTGCTGCTGCAGCTAGAATTGTTACTGCG
TCCTTCCTTGACGATAGACATAGCAGCAACAATGTGACCGTGAAAAGTTA
TATCTGCAGTGGTGTTGCATCCTCCTCATGCGCAACGTGTCAAAAAGTCC
AAATCTACGCCAACCTTAAGCAAAAACGAAAACGCACATTACGAGGCTTC
GAACGAGGAAGGGAAGGAGGGAGGGACGGGACACCCACCGCCACCGCCAC
AATGTCAAGGCGGAAGGGGGTGGCGGATGACTGCGGCTGCGATGGGGGGA
CAGGCAAGGCGGGGGGGGTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAGGAGGAGGAAGAGGAGGGGAAGATCGCAGAGGA
GGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGATGGAGA
AGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGTGCGCTG
TTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATTGTTGGC
AAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGATGCCGG
AGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCAAGGTTG
GAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGAGGAGAT
GGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGCAGAAGC
AGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAGGCCAAG
ACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAACGATTT
ATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGTTGGAAG
GGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCGAGAGGG
GGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA

protein sequence of NO25G00590.1

>NO25G00590.1-protein ID=NO25G00590.1-protein|Name=NO25G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MASPSSFLVLVASHRRRRRKPTTKKEEDAKQQEKEEEEEAEPCSASGVLP
PIPGYEWVQVRETWGRLHLYRHAPRTYAMLQHPHHPLPRSRGGGGGQVRA
IAGNDSRWRSGSLSLSTDSVDGSSSGSGYFVGSGGRGANSGASTAQQEQE
SGLHTPFYPARLSTVLLLGCGKSSSSSNSSRSVSEGCGADPSSTTSPPAI
FAAAATAATTTATTTPILSVLELLEGLAMIAPRIAFVHIIRERHRGGTST
HALVTLDSVEAAQGWVALLGDDQTNRDLVMGGQLVYASGVVMVNEPRSDA
LLCCLKSLVDDAGPADAAAATGARFGGESGYPSLDELSQLGTVQVQGPGG
GSVSSARCLALGPPADALALLSSLVLFVGKVEEGKEEKRAYVMENEGGGG
VESNEVGSMDNSNSCSSNEVSSSRSAIEEEGEGGWEVDGSMALFSQGLDS
YLAELPTCLQCLNRLDPVAVGVALGIPPLPGTAAADDAADAAAAARIVTA
SFLDDRHSSNNVTVKSYICSGVASSSCATCQKVQIYANLKQKRKRTLRGF
ERGREGGRDGTPTATATMSRRKGVADDCGCDGGTGKAGGVEEEEEEEEEE
EEEEEKEEEEEGKIAEEDAEGEGGIRGRRGRMEKGPQGKLDGLGAEYSAL
LMSQLEEQKHYYERLLAKTAAELAHSVCQDEMPEGVRREADQVRGQIARL
EEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKAK
TALDTEVADLEAQINDLSFFLRTKTAVQESELEGGGVMIGHTVTAAAPRG
GRGGRRRKGGGK*

mRNA from alignment at chr25:165497..168141+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G00590.1 ID=NO25G00590.1|Name=NO25G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2645bp|location=Sequence derived from alignment at chr25:165497..168141+ (Nannochloropsis oceanica)
ATGGCGTCTCCCTCCTCCTTCCTCGTGCTGGTGGCGTCACACCGGAGGCG
CCGACGGAAACCAACTACAAAAAAAGAGGAGGACGCAAAGCAGCAGGAGA
AGGAGGAAGAGGAGGAAGCTGAGCCATGCAGCGCATCAGGAGTACTGCCT
CCCATCCCCGGGTACGAATGGGTGCAGGTCCGCGAGACGTGGGGCCGTCT
ACACCTCTACCGGCACGCCCCACGTACCTACGCGATGCTGCAACACCCTC
ACCATCCCCTCCCACGCAGTAGAGGTGGTGGCGGAGGACAGGTAAGAGCT
ATTGCTGGGAATGACTCCCGATGGCGCAGTGGTAGTCTGAGCTTAAGTAC
GGATAGTGTGGATGGAAGCAGCAGCGGTAGCGGGTACTTTGTCGGGAGTG
GAGGAAGGGGGGCAAACTCGGGCGCCAGCACCGCACAGCAGGAGCAGGAA
AGTGGACTTCATACCCCTTTTTATCCAGCACGCTTGTCTACAGTTTTGTT
GCTGGGGTGCGGCAAGAGCAGTAGCAGTAGTAATAGCAGCAGGAGTGTAT
CCGAGGGCTGCGGGGCGGACCCCTCCTCTACCACTTCTCCGCCAGCGATT
TTTGCTGCCGCTGCTACTGCTGCTACTACTACTGCTACTACAACACCTAT
ACTATCAGTCCTGGAGCTTCTGGAAGGTCTCGCTATGATTGCACCGCGTA
TTGCCTTTGTCCACATAATAAGGGAACGACACAGAGGGGGCACCAGCACC
CATGCCCTCGTCACCTTAGACTCGGTGGAGGCAGCACAAGGATGGGTAGC
CTTGCTGGGGGACGATCAAACAAATAGGGATTTGGTCATGGGTGGACAGC
TCGTGTATGCCTCTGGGGTGGTGATGGTTAATGAACCACGAAGCGACGCG
TTGCTTTGCTGTCTGAAGAGCCTGGTGGACGACGCCGGGCCTGCAGACGC
TGCTGCAGCAACTGGCGCTCGTTTTGGTGGTGAGAGTGGTTATCCGAGTT
TAGACGAATTGTCGCAGCTGGGCACGGTGCAGGTGCAAGGGCCGGGGGGA
GGGAGCGTCAGCAGTGCACGTTGCCTTGCGCTAGGCCCGCCTGCAGACGC
GCTGGCTTTGTTAAGTTCCCTTGTCTTGTTTGTGGGTAAGGTGGAGGAAG
GGAAGGAGGAGAAGAGGGCGTATGTCATGGAGAATGAGGGCGGGGGAGGG
GTGGAGTCCAATGAAGTGGGTTCGATGGATAACAGCAATAGCTGCAGCAG
TAACGAGGTCAGCAGCAGTCGCAGCGCGATCGAGGAAGAGGGGGAGGGAG
GGTGGGAGGTTGACGGATCCATGGCTCTTTTTTCGCAGGGGCTGGACTCC
TACTTGGCAGAATTGCCGACGTGCTTGCAATGTCTCAACCGTCTCGATCC
TGTTGCCGTAGGGGTAGCCCTAGGTATCCCCCCTCTTCCCGGCACCGCTG
CTGCTGATGATGCTGCTGATGCTGCTGCTGCAGCTAGAATTGTTACTGCG
TCCTTCCTTGACGATAGACATAGCAGCAACAATGTGACCGTGAAAAGTTA
TATCTGCAGTGGTGTTGCATCCTCCTCATGCGCAACGTGTCAAAAAGTCC
AAATCTACGCCAACCTTAAGCAAAAACGAAAACGCACATTACGAGGCTTC
GAACGAGGAAGGGAAGGAGGGAGGGACGGGACACCCACCGCCACCGCCAC
AAGTACTCTCCACACTCTCACCTGCAACACGTGCGGAATTCCCGAAAACC
TGTGGATCTGCCTGTTGTGTAGTCACGTGGGGTGTGGGCGCTACACAGCC
GAGCACGCCAAAATGCACTTTCATCAATCAGGCCATATTTTTTCATTAGA
GCTAGCCACGGGGAGAGTGTGGGACTACGTTGAAGATGTCTTTGTGCATG
CAACGCAGTGTCAAGGCGGAAGGGGGTGGCGGATGACTGCGGCTGCGATG
GGGGGACAGGCAAGGCGGGGGGGGTCGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAAGAGGAGGGGAAGATCGC
AGAGGAGGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGA
TGGAGAAGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGT
GCGCTGTTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATT
GTTGGCAAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGA
TGCCGGAGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCA
AGGTTGGAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGA
GGAGATGGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGC
AGAAGCAGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAG
GCCAAGACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAA
CGATTTATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGT
TGGAAGGGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCG
AGAGGGGGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA

Coding sequence (CDS) from alignment at chr25:165497..168141+

>NO25G00590.1 ID=NO25G00590.1|Name=NO25G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=2439bp|location=Sequence derived from alignment at chr25:165497..168141+ (Nannochloropsis oceanica)
ATGGCGTCTCCCTCCTCCTTCCTCGTGCTGGTGGCGTCACACCGGAGGCG
CCGACGGAAACCAACTACAAAAAAAGAGGAGGACGCAAAGCAGCAGGAGA
AGGAGGAAGAGGAGGAAGCTGAGCCATGCAGCGCATCAGGAGTACTGCCT
CCCATCCCCGGGTACGAATGGGTGCAGGTCCGCGAGACGTGGGGCCGTCT
ACACCTCTACCGGCACGCCCCACGTACCTACGCGATGCTGCAACACCCTC
ACCATCCCCTCCCACGCAGTAGAGGTGGTGGCGGAGGACAGGTAAGAGCT
ATTGCTGGGAATGACTCCCGATGGCGCAGTGGTAGTCTGAGCTTAAGTAC
GGATAGTGTGGATGGAAGCAGCAGCGGTAGCGGGTACTTTGTCGGGAGTG
GAGGAAGGGGGGCAAACTCGGGCGCCAGCACCGCACAGCAGGAGCAGGAA
AGTGGACTTCATACCCCTTTTTATCCAGCACGCTTGTCTACAGTTTTGTT
GCTGGGGTGCGGCAAGAGCAGTAGCAGTAGTAATAGCAGCAGGAGTGTAT
CCGAGGGCTGCGGGGCGGACCCCTCCTCTACCACTTCTCCGCCAGCGATT
TTTGCTGCCGCTGCTACTGCTGCTACTACTACTGCTACTACAACACCTAT
ACTATCAGTCCTGGAGCTTCTGGAAGGTCTCGCTATGATTGCACCGCGTA
TTGCCTTTGTCCACATAATAAGGGAACGACACAGAGGGGGCACCAGCACC
CATGCCCTCGTCACCTTAGACTCGGTGGAGGCAGCACAAGGATGGGTAGC
CTTGCTGGGGGACGATCAAACAAATAGGGATTTGGTCATGGGTGGACAGC
TCGTGTATGCCTCTGGGGTGGTGATGGTTAATGAACCACGAAGCGACGCG
TTGCTTTGCTGTCTGAAGAGCCTGGTGGACGACGCCGGGCCTGCAGACGC
TGCTGCAGCAACTGGCGCTCGTTTTGGTGGTGAGAGTGGTTATCCGAGTT
TAGACGAATTGTCGCAGCTGGGCACGGTGCAGGTGCAAGGGCCGGGGGGA
GGGAGCGTCAGCAGTGCACGTTGCCTTGCGCTAGGCCCGCCTGCAGACGC
GCTGGCTTTGTTAAGTTCCCTTGTCTTGTTTGTGGGTAAGGTGGAGGAAG
GGAAGGAGGAGAAGAGGGCGTATGTCATGGAGAATGAGGGCGGGGGAGGG
GTGGAGTCCAATGAAGTGGGTTCGATGGATAACAGCAATAGCTGCAGCAG
TAACGAGGTCAGCAGCAGTCGCAGCGCGATCGAGGAAGAGGGGGAGGGAG
GGTGGGAGGTTGACGGATCCATGGCTCTTTTTTCGCAGGGGCTGGACTCC
TACTTGGCAGAATTGCCGACGTGCTTGCAATGTCTCAACCGTCTCGATCC
TGTTGCCGTAGGGGTAGCCCTAGGTATCCCCCCTCTTCCCGGCACCGCTG
CTGCTGATGATGCTGCTGATGCTGCTGCTGCAGCTAGAATTGTTACTGCG
TCCTTCCTTGACGATAGACATAGCAGCAACAATGTGACCGTGAAAAGTTA
TATCTGCAGTGGTGTTGCATCCTCCTCATGCGCAACGTGTCAAAAAGTCC
AAATCTACGCCAACCTTAAGCAAAAACGAAAACGCACATTACGAGGCTTC
GAACGAGGAAGGGAAGGAGGGAGGGACGGGACACCCACCGCCACCGCCAC
AATGTCAAGGCGGAAGGGGGTGGCGGATGACTGCGGCTGCGATGGGGGGA
CAGGCAAGGCGGGGGGGGTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAGGAGGAGGAAGAGGAGGGGAAGATCGCAGAGGA
GGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGATGGAGA
AGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGTGCGCTG
TTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATTGTTGGC
AAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGATGCCGG
AGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCAAGGTTG
GAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGAGGAGAT
GGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGCAGAAGC
AGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAGGCCAAG
ACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAACGATTT
ATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGTTGGAAG
GGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCGAGAGGG
GGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA

Synonyms

Publications