NO25G00560, NO25G00560 (gene) Nannochloropsis oceanica

Overview
NameNO25G00560
Unique NameNO25G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr25:160649..161974 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:160649..161974 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO25G00560 vs. NCBI_GenBank
Match: EWM21583.1 (hypothetical protein Naga_100012g83 [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 1.900e-36
Identity = 84/128 (65.62%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:    2 PKAQPSTESRHIGVGGGVA-----QNNKDMPEESKLYLTEVERRDMEMEQIELTRVGDGVNQLKQIVVDMNERVKLQNAELEPIAEQLADHREDMGEVNKRLKAAARKGKRWGSFGRNLLCMLLLVGQ 125
            P+   ST  + +G    +A      + KD+ +ESK YL+EVERRD+EME +ELTRVGDGV+QLKQ+ VDMNER+++Q AEL+PI  QLA +RED+GEVN+RLKAAARKGKRWGSFGRNLLCMLLLVGQ
Sbjct:   94 PQNFRSTSEKCLGPTNSLAPVAAFSHRKDLSDESKRYLSEVERRDLEMEHVELTRVGDGVSQLKQVAVDMNERIQVQKAELDPIVGQLAGYREDIGEVNQRLKAAARKGKRWGSFGRNLLCMLLLVGQ 221
The following BLAST results are available for this feature:
BLAST of NO25G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21583.11.900e-3665.63hypothetical protein Naga_100012g83 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004377NSK004377Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00560.1NO25G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100012g83gene8855Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00560.1NO25G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00560 ID=NO25G00560|Name=NO25G00560|organism=Nannochloropsis oceanica|type=gene|length=1326bp
ATGCCCAAGgtgagtgagagccttgggagacatgggagggaggagcacga
agcaccgctcggtatggctctgctgctgctgttgatgcacaggctttatc
gtcacgtattttcccctcactccaacacagGCACAGCCCAGCACCGAGAG
CCGCCACATAGgtcagtcgttcgttgtgcgagtaatggctggatgtgttt
gtttcgggccctcttgtcggtgtgctttgccccctgcacgacccaaagcc
tcctgcctccttggctgaaagatcgatccctcttctcccctccgcacgta
gGCGTGGGCGGCGGAGTGGCCCAGAACAACAAAGATATGCCCGAGGAGTC
GAAGCTGTACCTTACCGAGGTGGAGCGGCGGGATATGGAGATGgtaggtg
gctgttgaggttggttagggcggtcggacgtcaagggtcgggtctggttg
acaaaggcttaaggaagggtggtgcttgtctacctacgacagcgcgtgtg
ctttgtttagtgtctccatggtagtttttcctcgtcgttgccatatcata
ctggccgcgtcttcggtttgtgactcaaaaggaagcaaacgtcatccatc
cctccctttgcctcttctcccacttgttacacagGAGCAAATTGAATTGA
CTCGTGTGGGCGACGGTGTTAACCAACTCAAGCAGATTGTCGTGGACATG
AATGAGgtaccacttggaatgttgcatcgaatcgatcctccctctcacca
acccctccctttccgttgcctctcttatccacctccctccctctttccca
tcaaaatctacagCGCGTCAAGCTACAAAATGCCGAGCTGGAACCCATCG
CAGAGCAACTGGCAGACCATCGGGAGGACATGGGTGAGGTCAACAAACGG
CTCAAGGCCGCGGCGAGGAAAGGGAAGCGGTGGGGAAGCTTCGGGCGGAA
CCTGCTCTGCATGTTGCTTTTGGTTGGCCAGgtaattgcgctgggctatt
tagttcaattcattattcaggagaatcgaaagcactgatagatgaatgag
agaattattttgtgtgcatatcgtctgtcaggagaatcgaaagcactgat
agatgaatgagagaattattttgtgtgcatatcgtctgtccgtgtctctg
aaagtgtgtcatcgctccgctccctttcgttcaattagACACAGAGAGTT
CGCGTTTCCCACTGTCCACCACCGTGTAAAGGCTCCATCCAACCCATCCG
AAAAAAGCAAAAGAAAGAGAACTTGTTTCGAAAAAAAAAAAGAGACTTGT
ATTGTTGCGTTTTTGCTTTCCTCTGA
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protein sequence of NO25G00560.1

>NO25G00560.1-protein ID=NO25G00560.1-protein|Name=NO25G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPKAQPSTESRHIGVGGGVAQNNKDMPEESKLYLTEVERRDMEMEQIELT
RVGDGVNQLKQIVVDMNERVKLQNAELEPIAEQLADHREDMGEVNKRLKA
AARKGKRWGSFGRNLLCMLLLVGQTQRVRVSHCPPPCKGSIQPIRKKQKK
ENLFRKKKRDLYCCVFAFL*
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Synonyms
Publications