NO25G00560.1, NO25G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00560.1
Unique NameNO25G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr25:160649..161974 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:160649..161974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00560.1 vs.
Match: EWM21583.1 (hypothetical protein Naga_100012g83 [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 1.900e-36
Identity = 84/128 (65.62%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:    2 PKAQPSTESRHIGVGGGVA-----QNNKDMPEESKLYLTEVERRDMEMEQIELTRVGDGVNQLKQIVVDMNERVKLQNAELEPIAEQLADHREDMGEVNKRLKAAARKGKRWGSFGRNLLCMLLLVGQ 125
            P+   ST  + +G    +A      + KD+ +ESK YL+EVERRD+EME +ELTRVGDGV+QLKQ+ VDMNER+++Q AEL+PI  QLA +RED+GEVN+RLKAAARKGKRWGSFGRNLLCMLLLVGQ
Sbjct:   94 PQNFRSTSEKCLGPTNSLAPVAAFSHRKDLSDESKRYLSEVERRDLEMEHVELTRVGDGVSQLKQVAVDMNERIQVQKAELDPIVGQLAGYREDIGEVNQRLKAAARKGKRWGSFGRNLLCMLLLVGQ 221
The following BLAST results are available for this feature:
BLAST of NO25G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21583.11.900e-3665.63hypothetical protein Naga_100012g83 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00560NO25G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00560.1NO25G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00560.1.cds1NO25G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00560.1.cds2NO25G00560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00560.1.cds3NO25G00560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00560.1.cds4NO25G00560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00560.1.cds5NO25G00560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00560.1.cds6NO25G00560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00560.1 ID=NO25G00560.1|Name=NO25G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGCCCAAGGCACAGCCCAGCACCGAGAGCCGCCACATAGGCGTGGGCGG
CGGAGTGGCCCAGAACAACAAAGATATGCCCGAGGAGTCGAAGCTGTACC
TTACCGAGGTGGAGCGGCGGGATATGGAGATGGAGCAAATTGAATTGACT
CGTGTGGGCGACGGTGTTAACCAACTCAAGCAGATTGTCGTGGACATGAA
TGAGCGCGTCAAGCTACAAAATGCCGAGCTGGAACCCATCGCAGAGCAAC
TGGCAGACCATCGGGAGGACATGGGTGAGGTCAACAAACGGCTCAAGGCC
GCGGCGAGGAAAGGGAAGCGGTGGGGAAGCTTCGGGCGGAACCTGCTCTG
CATGTTGCTTTTGGTTGGCCAGACACAGAGAGTTCGCGTTTCCCACTGTC
CACCACCGTGTAAAGGCTCCATCCAACCCATCCGAAAAAAGCAAAAGAAA
GAGAACTTGTTTCGAAAAAAAAAAAGAGACTTGTATTGTTGCGTTTTTGC
TTTCCTCTGA
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protein sequence of NO25G00560.1

>NO25G00560.1-protein ID=NO25G00560.1-protein|Name=NO25G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPKAQPSTESRHIGVGGGVAQNNKDMPEESKLYLTEVERRDMEMEQIELT
RVGDGVNQLKQIVVDMNERVKLQNAELEPIAEQLADHREDMGEVNKRLKA
AARKGKRWGSFGRNLLCMLLLVGQTQRVRVSHCPPPCKGSIQPIRKKQKK
ENLFRKKKRDLYCCVFAFL*
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mRNA from alignment at chr25:160649..161974+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00560.1 ID=NO25G00560.1|Name=NO25G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at chr25:160649..161974+ (Nannochloropsis oceanica)
ATGCCCAAGGTGAGTGAGAGCCTTGGGAGACATGGGAGGGAGGAGCACGA
AGCACCGCTCGGTATGGCTCTGCTGCTGCTGTTGATGCACAGGCTTTATC
GTCACGTATTTTCCCCTCACTCCAACACAGGCACAGCCCAGCACCGAGAG
CCGCCACATAGGTCAGTCGTTCGTTGTGCGAGTAATGGCTGGATGTGTTT
GTTTCGGGCCCTCTTGTCGGTGTGCTTTGCCCCCTGCACGACCCAAAGCC
TCCTGCCTCCTTGGCTGAAAGATCGATCCCTCTTCTCCCCTCCGCACGTA
GGCGTGGGCGGCGGAGTGGCCCAGAACAACAAAGATATGCCCGAGGAGTC
GAAGCTGTACCTTACCGAGGTGGAGCGGCGGGATATGGAGATGGTAGGTG
GCTGTTGAGGTTGGTTAGGGCGGTCGGACGTCAAGGGTCGGGTCTGGTTG
ACAAAGGCTTAAGGAAGGGTGGTGCTTGTCTACCTACGACAGCGCGTGTG
CTTTGTTTAGTGTCTCCATGGTAGTTTTTCCTCGTCGTTGCCATATCATA
CTGGCCGCGTCTTCGGTTTGTGACTCAAAAGGAAGCAAACGTCATCCATC
CCTCCCTTTGCCTCTTCTCCCACTTGTTACACAGGAGCAAATTGAATTGA
CTCGTGTGGGCGACGGTGTTAACCAACTCAAGCAGATTGTCGTGGACATG
AATGAGGTACCACTTGGAATGTTGCATCGAATCGATCCTCCCTCTCACCA
ACCCCTCCCTTTCCGTTGCCTCTCTTATCCACCTCCCTCCCTCTTTCCCA
TCAAAATCTACAGCGCGTCAAGCTACAAAATGCCGAGCTGGAACCCATCG
CAGAGCAACTGGCAGACCATCGGGAGGACATGGGTGAGGTCAACAAACGG
CTCAAGGCCGCGGCGAGGAAAGGGAAGCGGTGGGGAAGCTTCGGGCGGAA
CCTGCTCTGCATGTTGCTTTTGGTTGGCCAGGTAATTGCGCTGGGCTATT
TAGTTCAATTCATTATTCAGGAGAATCGAAAGCACTGATAGATGAATGAG
AGAATTATTTTGTGTGCATATCGTCTGTCAGGAGAATCGAAAGCACTGAT
AGATGAATGAGAGAATTATTTTGTGTGCATATCGTCTGTCCGTGTCTCTG
AAAGTGTGTCATCGCTCCGCTCCCTTTCGTTCAATTAGACACAGAGAGTT
CGCGTTTCCCACTGTCCACCACCGTGTAAAGGCTCCATCCAACCCATCCG
AAAAAAGCAAAAGAAAGAGAACTTGTTTCGAAAAAAAAAAAGAGACTTGT
ATTGTTGCGTTTTTGCTTTCCTCTGA
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Coding sequence (CDS) from alignment at chr25:160649..161974+

>NO25G00560.1 ID=NO25G00560.1|Name=NO25G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr25:160649..161974+ (Nannochloropsis oceanica)
ATGCCCAAGGCACAGCCCAGCACCGAGAGCCGCCACATAGGCGTGGGCGG
CGGAGTGGCCCAGAACAACAAAGATATGCCCGAGGAGTCGAAGCTGTACC
TTACCGAGGTGGAGCGGCGGGATATGGAGATGGAGCAAATTGAATTGACT
CGTGTGGGCGACGGTGTTAACCAACTCAAGCAGATTGTCGTGGACATGAA
TGAGCGCGTCAAGCTACAAAATGCCGAGCTGGAACCCATCGCAGAGCAAC
TGGCAGACCATCGGGAGGACATGGGTGAGGTCAACAAACGGCTCAAGGCC
GCGGCGAGGAAAGGGAAGCGGTGGGGAAGCTTCGGGCGGAACCTGCTCTG
CATGTTGCTTTTGGTTGGCCAGACACAGAGAGTTCGCGTTTCCCACTGTC
CACCACCGTGTAAAGGCTCCATCCAACCCATCCGAAAAAAGCAAAAGAAA
GAGAACTTGTTTCGAAAAAAAAAAAGAGACTTGTATTGTTGCGTTTTTGC
TTTCCTCTGA
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Synonyms
Publications