NO25G00540, NO25G00540 (gene) Nannochloropsis oceanica

Overview
NameNO25G00540
Unique NameNO25G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length324
Alignment locationchr25:156421..156744 +

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Properties
Property NameValue
DescriptionUbiquitin-fold modifier 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:156421..156744 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR005375UFM1
Homology
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: EWM21624.1 (Ubiquitin-fold modifier 1 [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 3.900e-35
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:    4 STSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGG 97
            S S   +   PKVTFK+TLTSDPKLPF++VSVPEDAPFTAVLKYVAEEFRVP+QTSA++T+DGVGINPAQSAGNVL+KHGTELRLIPRDRVGG
Sbjct:   12 SRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_008606045.1 (ubiquitin-fold modifier 1 [Saprolegnia diclina VS20] >EQC40346.1 ubiquitin-fold modifier 1 [Saprolegnia diclina VS20])

HSP 1 Score: 147.5 bits (371), Expect = 2.400e-32
Identity = 69/82 (84.15%), Postives = 80/82 (97.56%), Query Frame = 0 
Query:   15 KVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGG 97
            KVTFKITLTSDPKLPF++VSVPE+APFTAVLKYVAEEFRVP+ TSA++T+DG+GINP+Q+AGNV +KHGTELRLIPRDRVGG
Sbjct:    4 KVTFKITLTSDPKLPFRIVSVPEEAPFTAVLKYVAEEFRVPAATSAIITNDGIGINPSQTAGNVFLKHGTELRLIPRDRVGG 85
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_006844328.1 (ubiquitin-fold modifier 1 [Amborella trichopoda] >ERN06003.1 hypothetical protein AMTR_s00143p00105790 [Amborella trichopoda])

HSP 1 Score: 147.1 bits (370), Expect = 3.100e-32
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 0 
Query:    3 SSTSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            S+T+S   +GG KV+FK+TLTSDPKLPFK+ SVPE+APFTAVLK+ AEEF+VP QTSA++T+DGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:    9 SATNSNKPMGGGKVSFKVTLTSDPKLPFKVFSVPEEAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 101
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_002972977.1 (ubiquitin-fold modifier 1 [Selaginella moellendorffii] >XP_002993398.1 ubiquitin-fold modifier 1 [Selaginella moellendorffii] >EFJ05583.1 hypothetical protein SELMODRAFT_163038 [Selaginella moellendorffii] >EFJ26198.1 hypothetical protein SELMODRAFT_413335 [Selaginella moellendorffii])

HSP 1 Score: 146.0 bits (367), Expect = 6.900e-32
Identity = 68/83 (81.93%), Postives = 80/83 (96.39%), Query Frame = 0 
Query:   13 GPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            G KVTFK+TLTSDPKLP+K++SVPE+APFTAVLKYVAEEF+VP+QTSA++T+DGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:   24 GGKVTFKVTLTSDPKLPYKVLSVPEEAPFTAVLKYVAEEFKVPAQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 106
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_008879096.1 (ubiquitin-fold modifier 1, variant 1 [Aphanomyces invadans] >ETV92345.1 ubiquitin-fold modifier 1, variant 1 [Aphanomyces invadans])

HSP 1 Score: 146.0 bits (367), Expect = 6.900e-32
Identity = 68/87 (78.16%), Postives = 81/87 (93.10%), Query Frame = 0 
Query:   10 MIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGG 97
            M  G K+TFKITL SDPKLPF++V+VPE+APFTAVLKYVAEEF+VPS TSA++T+DG+GINP+Q+AGNV +KHGTELRLIPRDRVGG
Sbjct:    1 MTSGAKMTFKITLASDPKLPFRIVNVPEEAPFTAVLKYVAEEFQVPSSTSAIITNDGMGINPSQTAGNVFLKHGTELRLIPRDRVGG 87
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_012203730.1 (hypothetical protein SPRG_08737 [Saprolegnia parasitica CBS 223.65] >KDO25547.1 hypothetical protein SPRG_08737 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 145.6 bits (366), Expect = 9.000e-32
Identity = 68/81 (83.95%), Postives = 79/81 (97.53%), Query Frame = 0 
Query:   15 KVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            KVTFKITLTSDPKLPF++VSVPE+APFTAVLKYVAEEFRVP+ TSA++T+DG+GINP+Q+AGNV +KHGTELRLIPRDRVG
Sbjct:  447 KVTFKITLTSDPKLPFRIVSVPEEAPFTAVLKYVAEEFRVPAATSAIITNDGIGINPSQTAGNVFLKHGTELRLIPRDRVG 527
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_007223744.1 (ubiquitin-fold modifier 1 [Prunus persica] >ONI34872.1 hypothetical protein PRUPE_1G503300 [Prunus persica] >ONI34873.1 hypothetical protein PRUPE_1G503300 [Prunus persica])

HSP 1 Score: 144.8 bits (364), Expect = 1.500e-31
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0 
Query:   10 MIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            M GG KV+FK+TLTSDPKLPFK+ SVPE APFTAVLKY AEEF+VP QTSA++T+DGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:    1 MAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKYAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 86
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_008233903.1 (PREDICTED: ubiquitin-fold modifier 1 [Prunus mume])

HSP 1 Score: 144.8 bits (364), Expect = 1.500e-31
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0 
Query:   10 MIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            M GG KV+FK+TLTSDPKLPFK+ SVPE APFTAVLKY AEEF+VP QTSA++T+DGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:    1 MAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKYAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 86
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: XP_021809335.1 (ubiquitin-fold modifier 1 [Prunus avium])

HSP 1 Score: 144.8 bits (364), Expect = 1.500e-31
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0 
Query:   10 MIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVG 96
            M GG KV+FK+TLTSDPKLPFK+ SVPE APFTAVLKY AEEF+VP QTSA++T+DGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:    1 MAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKYAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 86
[Close]
BLAST of NO25G00540 vs. NCBI_GenBank
Match: Q5PU89.1 (RecName: Full=Ubiquitin-fold modifier 1; AltName: Full=Protein PR46A; Flags: Precursor >AAV71156.1 PR46a [Chlamydomonas incerta])

HSP 1 Score: 144.8 bits (364), Expect = 1.500e-31
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 0 
Query:    4 STSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGGGSHRR 102
            S  + P  G  KVTFK+TLTSDPKLPF++ SVPE+APFTAVLK+ AEEF+VP+QTSA++T+DGVGINP Q+AGNV +KHG+ELRLIPRDRVGG S  R
Sbjct:    2 SQQTTPAPGVTKVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGGSSLAR 99
The following BLAST results are available for this feature:
BLAST of NO25G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21624.13.900e-3582.80Ubiquitin-fold modifier 1 [Nannochloropsis gaditan... [more]
XP_008606045.12.400e-3284.15ubiquitin-fold modifier 1 [Saprolegnia diclina VS2... [more]
XP_006844328.13.100e-3275.27ubiquitin-fold modifier 1 [Amborella trichopoda] >... [more]
XP_002972977.16.900e-3281.93ubiquitin-fold modifier 1 [Selaginella moellendorf... [more]
XP_008879096.16.900e-3278.16ubiquitin-fold modifier 1, variant 1 [Aphanomyces ... [more]
XP_012203730.19.000e-3283.95hypothetical protein SPRG_08737 [Saprolegnia paras... [more]
XP_007223744.11.500e-3180.23ubiquitin-fold modifier 1 [Prunus persica] >ONI348... [more]
XP_008233903.11.500e-3180.23PREDICTED: ubiquitin-fold modifier 1 [Prunus mume][more]
XP_021809335.11.500e-3180.23ubiquitin-fold modifier 1 [Prunus avium][more]
Q5PU89.11.500e-3171.43RecName: Full=Ubiquitin-fold modifier 1; AltName: ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004378NSK004378Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00540.1NO25G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603019gene_8538Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g85gene8856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00540.1NO25G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00540 ID=NO25G00540|Name=NO25G00540|organism=Nannochloropsis oceanica|type=gene|length=324bp
ATGGCCAGCAGTACCAGTAGCAAGCCCATGATCGGGGGGCCCAAAGTGAC
GTTTAAGATCACGCTAACTTCGGATCCGAAGCTCCCCTTTAAGATGGTGT
CCGTACCGGAAGATGCGCCGTTCACTGCGGTCTTGAAATACGTAGCAGAG
GAGTTCCGTGTACCTTCTCAGACGAGTGCGGTTGTTACCGATGACGGCGT
GGGAATCAATCCTGCCCAGTCTGCGGGCAACGTGTTGATGAAGCATGGTA
CGGAGCTGCGTCTCATACCCCGAGACCGCGTCGGCGGAGGGAGCCACCGG
AGACGGGGAGGAGCAGGGTTGTGA
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protein sequence of NO25G00540.1

>NO25G00540.1-protein ID=NO25G00540.1-protein|Name=NO25G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASSTSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAE
EFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGGGSHR
RRGGAGL*
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Synonyms
Publications