NO25G00540.1, NO25G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00540.1
Unique NameNO25G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length324
Alignment locationchr25:156421..156744 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:156421..156744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00540.1 vs.
Match: EWM21624.1 (Ubiquitin-fold modifier 1 [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 3.900e-35
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:    4 STSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAEEFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGG 97
            S S   +   PKVTFK+TLTSDPKLPF++VSVPEDAPFTAVLKYVAEEFRVP+QTSA++T+DGVGINPAQSAGNVL+KHGTELRLIPRDRVGG
Sbjct:   12 SRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
The following BLAST results are available for this feature:
BLAST of NO25G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21624.13.900e-3582.80Ubiquitin-fold modifier 1 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00540NO25G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00540.1NO25G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00540.1.cds1NO25G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00540.1 ID=NO25G00540.1|Name=NO25G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
ATGGCCAGCAGTACCAGTAGCAAGCCCATGATCGGGGGGCCCAAAGTGAC
GTTTAAGATCACGCTAACTTCGGATCCGAAGCTCCCCTTTAAGATGGTGT
CCGTACCGGAAGATGCGCCGTTCACTGCGGTCTTGAAATACGTAGCAGAG
GAGTTCCGTGTACCTTCTCAGACGAGTGCGGTTGTTACCGATGACGGCGT
GGGAATCAATCCTGCCCAGTCTGCGGGCAACGTGTTGATGAAGCATGGTA
CGGAGCTGCGTCTCATACCCCGAGACCGCGTCGGCGGAGGGAGCCACCGG
AGACGGGGAGGAGCAGGGTTGTGA
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protein sequence of NO25G00540.1

>NO25G00540.1-protein ID=NO25G00540.1-protein|Name=NO25G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASSTSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAE
EFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGGGSHR
RRGGAGL*
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mRNA from alignment at chr25:156421..156744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00540.1 ID=NO25G00540.1|Name=NO25G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp|location=Sequence derived from alignment at chr25:156421..156744+ (Nannochloropsis oceanica)
ATGGCCAGCAGTACCAGTAGCAAGCCCATGATCGGGGGGCCCAAAGTGAC
GTTTAAGATCACGCTAACTTCGGATCCGAAGCTCCCCTTTAAGATGGTGT
CCGTACCGGAAGATGCGCCGTTCACTGCGGTCTTGAAATACGTAGCAGAG
GAGTTCCGTGTACCTTCTCAGACGAGTGCGGTTGTTACCGATGACGGCGT
GGGAATCAATCCTGCCCAGTCTGCGGGCAACGTGTTGATGAAGCATGGTA
CGGAGCTGCGTCTCATACCCCGAGACCGCGTCGGCGGAGGGAGCCACCGG
AGACGGGGAGGAGCAGGGTTGTGA
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Coding sequence (CDS) from alignment at chr25:156421..156744+

>NO25G00540.1 ID=NO25G00540.1|Name=NO25G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr25:156421..156744+ (Nannochloropsis oceanica)
ATGGCCAGCAGTACCAGTAGCAAGCCCATGATCGGGGGGCCCAAAGTGAC
GTTTAAGATCACGCTAACTTCGGATCCGAAGCTCCCCTTTAAGATGGTGT
CCGTACCGGAAGATGCGCCGTTCACTGCGGTCTTGAAATACGTAGCAGAG
GAGTTCCGTGTACCTTCTCAGACGAGTGCGGTTGTTACCGATGACGGCGT
GGGAATCAATCCTGCCCAGTCTGCGGGCAACGTGTTGATGAAGCATGGTA
CGGAGCTGCGTCTCATACCCCGAGACCGCGTCGGCGGAGGGAGCCACCGG
AGACGGGGAGGAGCAGGGTTGTGA
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Synonyms
Publications