NO25G00400, NO25G00400 (gene) Nannochloropsis oceanica

Overview
NameNO25G00400
Unique NameNO25G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr25:121794..123335 +

Link to JBrowse

Properties
Property NameValue
DescriptionGolgi apparatus membrane protein TVP15
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:121794..123335 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO25G00400 vs. NCBI_GenBank
Match: XP_005852601.1 (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >EKU23232.1 hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >EWM21558.1 Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 1.200e-49
Identity = 94/128 (73.44%), Postives = 112/128 (87.50%), Query Frame = 0 
Query:    4 KTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWFWRGVFQIFVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGLCFVKRWRDSNLAKYRTMRAHAEMADELQGDPSLAPPPR 132
            +T+P  TVRLYCLFFL++I+LSE+EWSKPVRDSAITTSWFWRG FQ+FVAALVYEM+P G +++  ++NFI F ++VLLV+GFLYA MGLCFVKRWRD+ LAKYRTMRAHAEMAD LQ D SLA  P+
Sbjct:   61 RTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQ 188
[Close]
BLAST of NO25G00400 vs. NCBI_GenBank
Match: CBN77586.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.2 bits (204), Expect = 6.700e-13
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 0 
Query:    8 SITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWFWRGVFQIFVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGLCFVKRWRDSNLAKYRTMRAHAEMADELQGD 124
            S+ VR Y + F ++II++ELEW+  VR+  +  SW  RGV   FV  LV E + +          +I   + +++ IG LY  +GLC VKR RD  +A+++T+ AHAEM   ++ D
Sbjct:   51 SVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRD 166
The following BLAST results are available for this feature:
BLAST of NO25G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852601.11.200e-4973.44hypothetical protein NGA_0712000 [Nannochloropsis ... [more]
CBN77586.16.700e-1337.93conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00400.1NO25G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G00400.2NO25G00400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673498gene_8524Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100559g4gene8868Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00400.1NO25G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G00400.2NO25G00400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00400 ID=NO25G00400|Name=NO25G00400|organism=Nannochloropsis oceanica|type=gene|length=1542bp
GTCTCCTCCCTCCCCTACCCACCCCTCCTCCCTGAACAAACTGAGACAGA
CAGTACTTTTACAACTATCTGAAGGGGATGCCTTCCGACGCCACGCTTCC
GGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCTTCGCGACCGCGTAC
AAGCACATCGTGCGCTAAAGgtatgttaccgagaattgtcagcattcata
agttccttcagacgaaagcagccgctcgttcgtagggggtgtaggtggga
ttctcgggtgggaagggtagaaagagagggcccggtccatcttttgttcg
tgcctgagacaatttattaaatgtgcctgtccacgtgaatgcaaaaaaaa
gaggtacaagttggaggcggggcacatcggaaaagaagtgaaacaaaagt
gtgtggccctaccatttaactcacaccagcactccaccaaaccacacata
tccagATCTTCACCGTTATAAATTGGATCACCATAATTGTGGCCGTCTTG
GCCGCGATAGCAGAGCTTCTTTCTTTGATAAATATGAGCAAAAAAACGGT
TCCAAGCATAACGGTTCGGTTATACTGCCTCTTCTTCTTGGTAATCATAA
TCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGAGGGACAGCGCGATTACC
ACGTCGTGGTTTTGGAGAGGCGTATTTCAGATTTTTGTGGCGGCCCTCGT
CTACGAGgtaagtccttcactgacactctgttttctgtgtatttacgtat
gcataactgtatatttatatgtgtatgtatgtatgtatgtatgtatgtat
gtatgtatgtatgtatgtatgtatgtgtgtatgtatgtatatatgtatgt
atatatgtatgtatgactgtatgtataaaggtatctagacatatgtatgc
atacatgtctacatctttttatgtgtttacttcctcttggaggggatgtg
gagtgaatcatttacaagcatatctgagtatcattattctatcacttacc
atggtaagaatgcccagtgagtgattgccatgcacaccgccttctcacac
cgtttctaatcgttttgtctcctggaaccacactccctcagATGAAGCCA
CAAGGCTCGAGTGTCACCGAGGCCGAGCAGAATTTTATCATCTTCACCTC
GTTGGTCCTGCTCGTCATCGGATTTCTGTACGCAGGCATGGGGTTGTGCT
TCGTCAAAAGGTGGCGGGACTCAAATCTAGCCAAATACCGCACGATGCGT
GCTCATGCTGAAATGGCCGACGAATTGCAAGGCGACCCTTCACTAGCGCC
GCCACCAAGGGTGTAGGAGTGTAAACGAAGGAGACGAAAAAGAAAGACTG
TCGGGAGGGTGAGACGTAGAGAATAAGACACAGAAAGAAGGCCGTTGCAT
TTCGGTAACTGCTTATTACTCACATACACGGCAGGAGAATGTGCAGCAGA
GAAGGAAAAAGACAAGGTAGTGTAAGCAACTCAGTGGGAGTTCTTTTCTT
TTCTTCCTCAGGGTAATAAGGAGTAAAGCAAATCGGTAGAGA
back to top

protein sequence of NO25G00400.1

>NO25G00400.1-protein ID=NO25G00400.1-protein|Name=NO25G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MPSDATLPGSQMPAVSAHPLRDRVQAHRALKIFTVINWITIIVAVLAAIA
ELLSLINMSKKTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWF
WRGVFQIFVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGL
CFVKRWRDSNLAKYRTMRAHAEMADELQGDPSLAPPPRV*
back to top

protein sequence of NO25G00400.2

>NO25G00400.2-protein ID=NO25G00400.2-protein|Name=NO25G00400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSKKTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWFWRGVFQI
FVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGLCFVKRWR
DSNLAKYRTMRAHAEMADELQGDPSLAPPPRV*
back to top
Synonyms
Publications