NO25G00400.2, NO25G00400.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00400.2
Unique NameNO25G00400.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr25:121794..123335 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:121794..123335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00400.2 vs.
Match: XP_005852601.1 (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526]; EKU23232.1 hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526]; EWM21558.1 Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 1.200e-49
Identity = 94/128 (73.44%), Postives = 112/128 (87.50%), Query Frame = 0 
Query:    4 KTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWFWRGVFQIFVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGLCFVKRWRDSNLAKYRTMRAHAEMADELQGDPSLAPPPR 132
            +T+P  TVRLYCLFFL++I+LSE+EWSKPVRDSAITTSWFWRG FQ+FVAALVYEM+P G +++  ++NFI F ++VLLV+GFLYA MGLCFVKRWRD+ LAKYRTMRAHAEMAD LQ D SLA  P+
Sbjct:   61 RTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQ 188
The following BLAST results are available for this feature:
BLAST of NO25G00400.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852601.11.200e-4973.44hypothetical protein NGA_0712000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00400NO25G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00400.2NO25G00400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00400.2.cds1NO25G00400.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00400.2.cds2NO25G00400.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00400.2 ID=NO25G00400.2|Name=NO25G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
GTCTCCTCCCTCCCCTACCCACCCCTCCTCCCTGAACAAACTGAGACAGA
CAGTACTTTTACAACTATCTGAAGGGGATGCCTTCCGACGCCACGCTTCC
GGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCTTCGCGACCGCGTAC
AAGCACATCGTGCGCTAAAGGTATGTTACCGAGAATTGTCAGCATTCATA
AGTTCCTTCAGACGAAAGCAGCCGCTCGTTCGTAGGGGGTGTAGGTGGGA
TTCTCGGGTGGGAAGGGTAGAAAGAGAGGGCCCGGTCCATCTTTTGTTCG
TGCCTGAGACAATTTATTAAATGTGCCTGTCCACGTGAATGCAAAAAAAA
GAGGTACAAGTTGGAGGCGGGGCACATCGGAAAAGAAGTGAAACAAAAGT
GTGTGGCCCTACCATTTAACTCACACCAGCACTCCACCAAACCACACATA
TCCAGATCTTCACCGTTATAAATTGGATCACCATAATTGTGGCCGTCTTG
GCCGCGATAGCAGAGCTTCTTTCTTTGATAAATATGAGCAAAAAAACGGT
TCCAAGCATAACGGTTCGGTTATACTGCCTCTTCTTCTTGGTAATCATAA
TCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGAGGGACAGCGCGATTACC
ACGTCGTGGTTTTGGAGAGGCGTATTTCAGATTTTTGTGGCGGCCCTCGT
CTACGAGATGAAGCCACAAGGCTCGAGTGTCACCGAGGCCGAGCAGAATT
TTATCATCTTCACCTCGTTGGTCCTGCTCGTCATCGGATTTCTGTACGCA
GGCATGGGGTTGTGCTTCGTCAAAAGGTGGCGGGACTCAAATCTAGCCAA
ATACCGCACGATGCGTGCTCATGCTGAAATGGCCGACGAATTGCAAGGCG
ACCCTTCACTAGCGCCGCCACCAAGGGTGTAGGAGTGTAAACGAAGGAGA
CGAAAAAGAAAGACTGTCGGGAGGGTGAGACGTAGAGAATAAGACACAGA
AAGAAGGCCGTTGCATTTCGGTAACTGCTTATTACTCACATACACGGCAG
GAGAATGTGCAGCAGAGAAGGAAAAAGACAAGGTAGTGTAAGCAACTCAG
TGGGAGTTCTTTTCTTTTCTTCCTCAGGGTAATAAGGAGTAAAGCAAATC
GGTAGAGA
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protein sequence of NO25G00400.2

>NO25G00400.2-protein ID=NO25G00400.2-protein|Name=NO25G00400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSKKTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWFWRGVFQI
FVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGLCFVKRWR
DSNLAKYRTMRAHAEMADELQGDPSLAPPPRV*
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mRNA from alignment at chr25:121794..123335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00400.2 ID=NO25G00400.2|Name=NO25G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at chr25:121794..123335+ (Nannochloropsis oceanica)
GTCTCCTCCCTCCCCTACCCACCCCTCCTCCCTGAACAAACTGAGACAGA
CAGTACTTTTACAACTATCTGAAGGGGATGCCTTCCGACGCCACGCTTCC
GGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCTTCGCGACCGCGTAC
AAGCACATCGTGCGCTAAAGGTATGTTACCGAGAATTGTCAGCATTCATA
AGTTCCTTCAGACGAAAGCAGCCGCTCGTTCGTAGGGGGTGTAGGTGGGA
TTCTCGGGTGGGAAGGGTAGAAAGAGAGGGCCCGGTCCATCTTTTGTTCG
TGCCTGAGACAATTTATTAAATGTGCCTGTCCACGTGAATGCAAAAAAAA
GAGGTACAAGTTGGAGGCGGGGCACATCGGAAAAGAAGTGAAACAAAAGT
GTGTGGCCCTACCATTTAACTCACACCAGCACTCCACCAAACCACACATA
TCCAGATCTTCACCGTTATAAATTGGATCACCATAATTGTGGCCGTCTTG
GCCGCGATAGCAGAGCTTCTTTCTTTGATAAATATGAGCAAAAAAACGGT
TCCAAGCATAACGGTTCGGTTATACTGCCTCTTCTTCTTGGTAATCATAA
TCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGAGGGACAGCGCGATTACC
ACGTCGTGGTTTTGGAGAGGCGTATTTCAGATTTTTGTGGCGGCCCTCGT
CTACGAGGTAAGTCCTTCACTGACACTCTGTTTTCTGTGTATTTACGTAT
GCATAACTGTATATTTATATGTGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTGTGTATGTATGTATATATGTATGT
ATATATGTATGTATGACTGTATGTATAAAGGTATCTAGACATATGTATGC
ATACATGTCTACATCTTTTTATGTGTTTACTTCCTCTTGGAGGGGATGTG
GAGTGAATCATTTACAAGCATATCTGAGTATCATTATTCTATCACTTACC
ATGGTAAGAATGCCCAGTGAGTGATTGCCATGCACACCGCCTTCTCACAC
CGTTTCTAATCGTTTTGTCTCCTGGAACCACACTCCCTCAGATGAAGCCA
CAAGGCTCGAGTGTCACCGAGGCCGAGCAGAATTTTATCATCTTCACCTC
GTTGGTCCTGCTCGTCATCGGATTTCTGTACGCAGGCATGGGGTTGTGCT
TCGTCAAAAGGTGGCGGGACTCAAATCTAGCCAAATACCGCACGATGCGT
GCTCATGCTGAAATGGCCGACGAATTGCAAGGCGACCCTTCACTAGCGCC
GCCACCAAGGGTGTAGGAGTGTAAACGAAGGAGACGAAAAAGAAAGACTG
TCGGGAGGGTGAGACGTAGAGAATAAGACACAGAAAGAAGGCCGTTGCAT
TTCGGTAACTGCTTATTACTCACATACACGGCAGGAGAATGTGCAGCAGA
GAAGGAAAAAGACAAGGTAGTGTAAGCAACTCAGTGGGAGTTCTTTTCTT
TTCTTCCTCAGGGTAATAAGGAGTAAAGCAAATCGGTAGAGA
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Coding sequence (CDS) from alignment at chr25:121794..123335+

>NO25G00400.2 ID=NO25G00400.2|Name=NO25G00400.2|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at chr25:121794..123335+ (Nannochloropsis oceanica)
ATGAGCAAAAAAACGGTTCCAAGCATAACGGTTCGGTTATACTGCCTCTT
CTTCTTGGTAATCATAATCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGA
GGGACAGCGCGATTACCACGTCGTGGTTTTGGAGAGGCGTATTTCAGATT
TTTGTGGCGGCCCTCGTCTACGAGATGAAGCCACAAGGCTCGAGTGTCAC
CGAGGCCGAGCAGAATTTTATCATCTTCACCTCGTTGGTCCTGCTCGTCA
TCGGATTTCTGTACGCAGGCATGGGGTTGTGCTTCGTCAAAAGGTGGCGG
GACTCAAATCTAGCCAAATACCGCACGATGCGTGCTCATGCTGAAATGGC
CGACGAATTGCAAGGCGACCCTTCACTAGCGCCGCCACCAAGGGTGTAG
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Synonyms
Publications