NO25G00350, NO25G00350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G00350 vs. NCBI_GenBank
Match: EWM21552.1 (rab family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 234.6 bits (597), Expect = 3.200e-58 Identity = 122/199 (61.31%), Postives = 143/199 (71.86%), Query Frame = 0 Query: 36 MTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESGPDGEAGAVGSDIVIDGAGRVXXXXXXXXXXXXXXGNIVLAPGKASVNPSSAAEGG---CC 232 MT+GVEYGLK A V+ ++IQIEIWDTAGQE YM+LT SYYRNADGCL+ FDLT R SF+ VSKW EHAR S NP+LV TLVGNKAD RQVAR EAEA+AAH GMEYRE+TAKD+ AVQGLF TTAERIF+A E+G + G GSDIVIDGAG++ G L+PG+++ + A G CC Sbjct: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFG---LSPGRSARSQEMAGNSGKGRCC 196
BLAST of NO25G00350 vs. NCBI_GenBank
Match: CBN76817.1 (Rab2B, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 188.0 bits (476), Expect = 3.400e-44 Identity = 85/182 (46.70%), Postives = 128/182 (70.33%), Query Frame = 0 Query: 1 MPSLVFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESGPDGEAGAV 183 MP+L+FK+I++GNT VGKS++LLQF E++F + H MTIGVE+G K + +++EIWDTAGQE ++++TRSYYR DGCL+ FD+T+R SF+++ +W++ AR NS NP L + L+ NKAD +R V E +A A HG+ + E++A++ V+ F TAERIF +E+ P + + Sbjct: 1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGI 182
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_009034590.1 (hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens] >EGB11031.1 hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens]) HSP 1 Score: 186.8 bits (473), Expect = 7.600e-44 Identity = 86/179 (48.04%), Postives = 125/179 (69.83%), Query Frame = 0 Query: 5 VFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVK-GRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESGPDGEAGAV 183 +FK+I++G+T+VGKSS++L F EQ F + H MTIGVE+ + Q+ G +EIWDTAGQE Y+++TRSYYR D CL+ +D+T R SFD + +W+ A+ N+ NP LVL LVGNKAD +G RQ++RAE +A A HGM + E+TAK+ V+ +F +A+R+ + P ++ AV Sbjct: 12 LFKYIIIGDTEVGKSSIMLMFTEQHFQQAHDMTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKSAAV 190
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_001453196.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAI39341.1 rab_B28 [Paramecium tetraurelia] >CAK85799.1 unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 181.4 bits (459), Expect = 3.200e-42 Identity = 80/171 (46.78%), Postives = 129/171 (75.44%), Query Frame = 0 Query: 3 SLVFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVES 174 S +FKFI++G+T VGKS LLLQF+++RF +KH +TIGVE+G + ++ G++I+++IWDTAGQE + ++TRSYYR+A G ++ +D+T R +F+++S+W+E A+ N GNP L TLVGNK+D + RQV+ E + A +HG+++ E++AK V+ +F TA++I + + S Sbjct: 4 SYLFKFILIGDTGVGKSCLLLQFIDKRFRQKHEVTIGVEFGARMIEIDGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQN-GNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNHGVDFVEVSAKTANNVEEVFLKTAQQILEKINS 173
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_001441913.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAI43252.1 rab_A28 [Paramecium tetraurelia] >CAK74516.1 unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 177.9 bits (450), Expect = 3.500e-41 Identity = 79/171 (46.20%), Postives = 129/171 (75.44%), Query Frame = 0 Query: 3 SLVFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVES 174 S +FKFI++G+T VGKS LLLQF+++RF +KH +TIGVE+G + + +G++I+++IWDTAGQE + ++TRSYYR+A G ++ +D+T R +F+++S+W+E A+ N GNP L TLVGNK+D + RQV+ E + A ++G+++ E++AK V+ +F TA++I + + S Sbjct: 4 SYLFKFILIGDTGVGKSCLLLQFIDKRFRQKHEVTIGVEFGARMIEFEGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQN-GNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNNGIDFVEVSAKTANNVEEVFLKTAQQILEKINS 173
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_022651518.1 (ras-related protein Rab-2A [Varroa destructor] >XP_022686419.1 ras-related protein Rab-2A [Varroa jacobsoni]) HSP 1 Score: 172.2 bits (435), Expect = 1.900e-39 Identity = 79/170 (46.47%), Postives = 120/170 (70.59%), Query Frame = 0 Query: 5 VFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESG 175 +FK+I++G+T VGKS LLLQF ++RF H +TIGVE+G + + + I+++IWDTAGQE + ++TRSYYR A G L+ +D+T R +FD ++ W+E AR +S N +V+ L+GNK+D +GRRQV + E EA A HG+ + E +AK + V+ F TA+ I++ +E G Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDRKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFDHLTTWLEDARQHS-NSNMVIMLIGNKSDLEGRRQVKKEEGEAFAQEHGLVFMETSAKTADNVEDAFIKTAKEIYEKIEEG 174
BLAST of NO25G00350 vs. NCBI_GenBank
Match: ORX85488.1 (ras-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 171.8 bits (434), Expect = 2.500e-39 Identity = 78/170 (45.88%), Postives = 122/170 (71.76%), Query Frame = 0 Query: 5 VFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESG 175 +FK+I++G+T VGKS LLLQF ++RF H +TIGVE+G + V + I++++WDTAGQE + ++TRSYYR A G L+ +D+T R +F+ ++KW+E AR +S N + + L+GNK+D +G+R V++ E EA A HG+ + E +AK + V+ F TAERI++ ++SG Sbjct: 7 LFKYIIIGDTGVGKSCLLLQFTDKRFQPAHDLTIGVEFGARFITVDNKSIKLQVWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFEHLAKWLEDAREHS-NDNITILLIGNKSDLEGKRAVSKEEGEAFAKEHGLFFLETSAKTSANVEEAFINTAERIYEKIQSG 175
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_003055718.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH60970.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 171.0 bits (432), Expect = 4.300e-39 Identity = 92/239 (38.49%), Postives = 137/239 (57.32%), Query Frame = 0 Query: 3 SLVFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESGPD----------GEAGAVGSDIVIDGAGRVXXXXXXXXXXXXXXGNIVLAPGKASVNPSSAAEGGCC 232 S +FK+I++G+T VGKS LLLQF ++RF H +TIGVE+G + + + I+++IWDTAGQE + ++TRSYYR A G L+ +D+T R +F+ ++ W+E AR ++ NP + +TLVGNK+D + R V+ E EA A HG+ + E +A+ +E V+ +F +TA I ++ G D G GA G I G G V V P+ +EGGCC Sbjct: 4 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQHVHDLTIGVEFGSRLVAIGEKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFEHLTSWLEDARQHA-NPNMTVTLVGNKSDAEASRVVSTEEGEAFAREHGLAFLETSAQTSEGVEEVFTSTAAAICAKIDDGLDVNNESNGIKPGYGGARGGGIRSGGGGVV----------------------DVGVQPARRSEGGCC 219
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_018418650.1 (PREDICTED: ras-related protein Rab-2B [Nanorana parkeri]) HSP 1 Score: 169.5 bits (428), Expect = 1.200e-38 Identity = 78/170 (45.88%), Postives = 119/170 (70.00%), Query Frame = 0 Query: 5 VFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESG 175 +FK+I++G+T VGKS LLLQF ++RF H +TIGVE+G + + G+ I+++IWDTAGQE + ++TRSYYR A G L+ +D+T R +F ++ W+E AR +S + +V+ L+GNK+D +GRR V+R E EA A HG+ + E +AK V+ F TA+ I+K ++ G Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFSHLASWLEDARQHSSS-NMVIILIGNKSDLEGRRDVSREEGEAFAREHGLIFMETSAKTAANVEEAFIGTAKEIYKKIQQG 174
BLAST of NO25G00350 vs. NCBI_GenBank
Match: XP_002646304.1 (C. briggsae CBR-UNC-108 protein [Caenorhabditis briggsae] >CAP31058.1 Protein CBR-UNC-108 [Caenorhabditis briggsae] >PIC51323.1 hypothetical protein B9Z55_001879 [Caenorhabditis nigoni]) HSP 1 Score: 169.5 bits (428), Expect = 1.200e-38 Identity = 77/170 (45.29%), Postives = 119/170 (70.00%), Query Frame = 0 Query: 5 VFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESG 175 +FK+I++G+T VGKS LLLQF ++RF H +TIGVE+G + + G+ I+++IWDTAGQE + ++TRSYYR A G L+ +D+T R +F+ ++ W+E AR +S N +V+ L+GNK+D + RR+V R E EA A HG+ + E +AK V+ F TA+ I++ ++ G Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTSWLEDARQHS-NSNMVIMLIGNKSDLEARREVKREEGEAFAREHGLVFMETSAKTANNVEEAFIDTAKEIYRKIQEG 174 The following BLAST results are available for this feature:
BLAST of NO25G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G00350 ID=NO25G00350|Name=NO25G00350|organism=Nannochloropsis oceanica|type=gene|length=1282bpback to top protein sequence of NO25G00350.1 >NO25G00350.1-protein ID=NO25G00350.1-protein|Name=NO25G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
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