NO25G00350.1, NO25G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00350.1
Unique NameNO25G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr25:105624..106905 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:105624..106905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00350.1 vs.
Match: EWM21552.1 (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 4.700e-62
Identity = 130/199 (65.33%), Postives = 154/199 (77.39%), Query Frame = 0 
Query:   36 MTIGVEYGLKPAQVKGRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWVEHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITAKDNEAVQGLFHTTAERIFKAVESGPDGEAGAVGSDIVIDGAGRVRLRSTSSSSASSSTGNIVLAPGKASVNPSSAAEGG---CC 232
            MT+GVEYGLK A V+ ++IQIEIWDTAGQE YM+LT SYYRNADGCL+ FDLT R SF+ VSKW EHAR  S NP+LV TLVGNKAD    RQVAR EAEA+AAH GMEYRE+TAKD+ AVQGLF TTAERIF+A E+G   + G  GSDIVIDGAG++RLRS +SS +SS+ G   L+PG+++ +   A   G   CC
Sbjct:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFG---LSPGRSARSQEMAGNSGKGRCC 196
The following BLAST results are available for this feature:
BLAST of NO25G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21552.14.700e-6265.33rab family gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00350NO25G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00350.1NO25G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00350.1.cds1NO25G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00350.1.cds2NO25G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00350.1.cds3NO25G00350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00350.1.cds4NO25G00350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00350.1.cds5NO25G00350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00350.1 ID=NO25G00350.1|Name=NO25G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGCCATCGCTCGTCTTCAAATTCATCGTGGTTGGGAACACGGATGTCGG
CAAGTCCTCACTCCTCCTTCAGTTTGTAGAACAGCGATTTAATGAGAAAC
ATGCCATGACGATCGGCGTAGAGTATGGGCTGAAGCCGGCACAAGTCAAG
GGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCAAGAGTGCTA
CATGGCTTTGACACGCTCGTACTACCGGAATGCCGACGGCTGTCTGGTCT
GCTTCGATTTGACAAATAGAAGCAGTTTCGACAGTGTCTCCAAATGGGTT
GAACACGCTCGCAGCAACAGCGGTAACCCTTACCTCGTGCTCACGCTGGT
TGGCAACAAGGCCGACTGCCAGGGGAGACGACAAGTGGCGCGGGCGGAGG
CGGAGGCCTTGGCAGCCCATCACGGCATGGAGTACCGAGAAATCACTGCC
AAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGCAGAGCGGAT
CTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGGCGGTGGGAA
GCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGTTCCACCTCT
TCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGCTCCAGGAAA
GGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCTGCTAG
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protein sequence of NO25G00350.1

>NO25G00350.1-protein ID=NO25G00350.1-protein|Name=NO25G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPSLVFKFIVVGNTDVGKSSLLLQFVEQRFNEKHAMTIGVEYGLKPAQVK
GRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWV
EHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMEYREITA
KDNEAVQGLFHTTAERIFKAVESGPDGEAGAVGSDIVIDGAGRVRLRSTS
SSSASSSTGNIVLAPGKASVNPSSAAEGGCC*
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mRNA from alignment at chr25:105624..106905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00350.1 ID=NO25G00350.1|Name=NO25G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at chr25:105624..106905- (Nannochloropsis oceanica)
ATGCCATGTAAGTGATAGATAGGGGAGCAATGGATAACATCAAGCCATAC
GTTTTTTAAAGTGGCCTCTGGAAAAAAACAACGCAACACCTCTGCACCAC
CAAACGCAGCGCTCGTCTTCAAATTCATCGTGGTTGGGAACACGGATGTC
GGCAAGTCCTCACTCCTCCTTCAGTTTGTAGAACAGCGATTTAATGAGAA
ACATGCCATGACGGTACGCTTTATTGGAGAGATTAGATGTTTAAATAGGG
ATTATCTGCGAGAGCTTGTCCTAGACGTATGTCGTGCTCCATAATTCTGC
CTCTTTCGTTCCCTTGCTCTGTCCACCGTTCAACCATGTCCATCGCTCGG
TTCAAAGCCACTTTGTTTTTATATTCCTCATCCGTATATTGTAGATCGGC
GTAGAGTATGGGCTGAAGCCGGCACAAGTCAAGGGCCGCGACATCCAGAT
CGAGATTTGGGACACGGCCGGGCAAGAGTGCTACATGGCTTTGACACGCT
CGTAAGCTAGCATGGCAGGAAGAGGTTTAGTCTGGGAAGAGGAAGCAGTC
GGGCATCCTGAGCTTAGATTCCATGTATTTCATGCTTATGGAACCGTTGT
ATCTTTGCTTGTGTATCGTGCTCGTTGCCCGTCCCCAGCTACTCATAGGC
CCACCCCTCCTCCCCCAACAGGTACTACCGGAATGCCGACGGCTGTCTGG
TCTGCTTCGATTTGACAAATAGAAGCAGTTTCGACAGTGTCTCCAAATGG
GTTGAACACGCTCGCAGCAACAGCGGTAACCCTTACCTCGTGCTCACGCT
GGTTGGCAACAAGGCCGACTGCCAGGGGAGACGACAAGTGGCGCGGGCGG
AGGCGGAGGCCTTGGCAGCCCATCACGGCATGGAGTGTAAGTGGGCGGTT
GAGATGCTTTTGTAATGCTGTTTCACTGATGCCCTTCCTCCCTCGCTCGC
TTTCTGGCGGCCGCACGGTTTTTGGTCAGTGTCATTCTTAGCCTCCCTCC
TTTCCGCTCTTCCTCGCAGACCGAGAAATCACTGCCAAGGATAATGAGGC
CGTGCAGGGGCTCTTCCACACCACCGCAGAGCGGATCTTCAAGGCAGTCG
AGAGTGGGCCGGATGGAGAGGCGGGGGCGGTGGGAAGCGATATTGTCATC
GACGGAGCCGGTCGAGTCCGCCTCCGTTCCACCTCTTCCTCTTCCGCTTC
CTCTTCCACCGGGAACATTGTGCTCGCTCCAGGAAAGGCCAGCGTAAATC
CAAGCAGTGCCGCAGAAGGCGGTTGCTGCTAG
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Coding sequence (CDS) from alignment at chr25:105624..106905-

>NO25G00350.1 ID=NO25G00350.1|Name=NO25G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr25:105624..106905- (Nannochloropsis oceanica)
ATGCCATCGCTCGTCTTCAAATTCATCGTGGTTGGGAACACGGATGTCGG
CAAGTCCTCACTCCTCCTTCAGTTTGTAGAACAGCGATTTAATGAGAAAC
ATGCCATGACGATCGGCGTAGAGTATGGGCTGAAGCCGGCACAAGTCAAG
GGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCAAGAGTGCTA
CATGGCTTTGACACGCTCGTACTACCGGAATGCCGACGGCTGTCTGGTCT
GCTTCGATTTGACAAATAGAAGCAGTTTCGACAGTGTCTCCAAATGGGTT
GAACACGCTCGCAGCAACAGCGGTAACCCTTACCTCGTGCTCACGCTGGT
TGGCAACAAGGCCGACTGCCAGGGGAGACGACAAGTGGCGCGGGCGGAGG
CGGAGGCCTTGGCAGCCCATCACGGCATGGAGTACCGAGAAATCACTGCC
AAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGCAGAGCGGAT
CTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGGCGGTGGGAA
GCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGTTCCACCTCT
TCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGCTCCAGGAAA
GGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCTGCTAG
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Synonyms
Publications