NO25G00200, NO25G00200 (gene) Nannochloropsis oceanica

Overview
NameNO25G00200
Unique NameNO25G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2963
Alignment locationchr25:42390..45352 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:42390..45352 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR007379Tim44-like_dom
Homology
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BLAST of NO25G00200 vs. NCBI_GenBank
Match: EWM20371.1 (hypothetical protein Naga_101306g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 1.300e-28
Identity = 89/175 (50.86%), Postives = 110/175 (62.86%), Query Frame = 0 
Query:    7 LASSRVSTSSFPRPTLALTTVSASIYRSSSSNSINRSSGIGRSKRHWPLTSSPSFLHFVSSLQGNKQRQSRYISLLSVLNSHRSFSSRNAVVDSYSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFGHIRKHAKTFELKGFGKLAQSLFIDFHEAYEK 182
            LAS      +  RP L +  V   + RS S++S   S  I       PL  +   +  +S L     R    I  +  L+  RS  SRNA+VDSYSSSGVI+DPY E  A+EKAAKE S  S+ GL+ RWAGIK +LQSGVSFGHIRKHAK+FELK FG+ A++LF+DFHEAYEK
Sbjct:   21 LASIVAGRGARLRPRLCVQVVKEGVPRSLSTSSPPASCSI-------PLIWN---MRHISRLHARPAR----IPHMPWLHVGRSL-SRNAIVDSYSSSGVIIDPYVERKAQEKAAKERSFLSLEGLKGRWAGIKGQLQSGVSFGHIRKHAKSFELKSFGQRARTLFVDFHEAYEK 180
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BLAST of NO25G00200 vs. NCBI_GenBank
Match: XP_005855080.1 (39s ribosomal protein mitochondrial-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21281.1 39s ribosomal protein mitochondrial-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 131.7 bits (330), Expect = 5.300e-27
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 0 
Query:   98 VDSYSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFGHIRKHAKTFELKGFGKLAQSLFIDFHEAYEK 182
            +DSYSSSGVI+DPY E  A+EKAAKE S  S+ GL+ RWAGIK +LQSGVSFGHIRKHAK+FELK FG+ A++LF+DFHEAYEK
Sbjct:    1 MDSYSSSGVIIDPYVERKAQEKAAKERSFLSLEGLKGRWAGIKGQLQSGVSFGHIRKHAKSFELKSFGQRARTLFVDFHEAYEK 84
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BLAST of NO25G00200 vs. NCBI_GenBank
Match: CBJ29484.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.3 bits (238), Expect = 2.500e-16
Identity = 74/244 (30.33%), Postives = 107/244 (43.85%), Query Frame = 0 
Query:   89 RSFSSRNAVVDSYSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFGHIRKHAKTFELKGFGKLAQSLFIDFHEAYEKGDVKRLAALCTEDLYLNLKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLRFLAFTGPTVIVQGRHVYNSGRGGSSMRTQIGYGQVTVVVSSRREEFYVDSHGRRREGGREXGRGGAPAIFENESILVLEVAFADPKGRWRLASIMEEA 333
            R  SS ++ +    SSG I DPY    A  K      + S  G++ R   +++ L+SGV  G I+KH   F +  F  +A  +F DF EA+ KGD + LA L TE+LY +LK +                               R + F  PT ++Q R           +  + G+GQVT  + S R+   VD+ G   E   +     A    +N ++ V E  F D  GRWRLA + E A
Sbjct:    9 RGISSSSSRLGEVRSSGGIFDPYVYRGAGGKGLP--PMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGE-----------------IKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRK-----KHISPKEGWGQVTCRLCSERQLLVVDAKGNEVEAKADEDATTA----QNVTVGVFEAFFGDSAGRWRLALVQEFA 224
The following BLAST results are available for this feature:
BLAST of NO25G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20371.11.300e-2850.86hypothetical protein Naga_101306g2, partial [Nanno... [more]
XP_005855080.15.300e-2773.8139s ribosomal protein mitochondrial-like protein, ... [more]
CBJ29484.12.500e-1630.33conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00200.1NO25G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206161gene_8499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00200.1NO25G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00200 ID=NO25G00200|Name=NO25G00200|organism=Nannochloropsis oceanica|type=gene|length=2963bp
ATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTCCTCCTT
TCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTTATCGCA
GCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGTTCCAAA
AGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGTCTCCTC
TCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGCTTTCTG
TCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTGgtgagt
atttctgtccctcccttcctcctcccttcccaccctccctccctccctct
aacctcctttccttccctccttctgcttagGACTCCTACTCCTCCTCCGG
CGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAAGGAAAAAGCAGCCA
AGGAGATCTCTCTGTTCTCAGTGCGAGgtagaaagggagggaagggaggg
aaggtgagacgaaggagaaggagggggaaaaggaaaaagtgactcaaaaa
gcgctttcaaaaacgattacttaacagGCCTGCAAAATCGCTGGGCGGGA
ATTAAAGCCAAGgtgagttgatggaaagtcggcactggcctctatggatc
tgggcgatgaaatttttagaaaaaatattttatattttttattaattaaa
ttaattattttaattaatgaatttacgaatttaatcatcttatatttcta
ttctaatgtcctgtctaccactccaatagctgcaattgtttttattattt
attattattattatatattattaaattatgaaaatattttattttaatca
tcttatatttctattctaatgtcctgtctaccacttcaatagctgcaatt
gtttttattatttattattattataataataaatttttaactcatgaaaa
tattttattttaatcatcttatatttctattctaatgtcctgtctaccac
tcctgtagctgcaattgtttttattaacttatggaaatattttattttaa
tcatcctatcttcctattctaatgtcatgtctaccactcctgtagCTGCA
ATCAGGTGTCTCATTCGGCCACATTAGGAAGCATGCCAAGACGTTCGAGT
TGAAGGGCTTCGGGAAGCTTGCCCAATCCCTCTTCATTGACTTCCACGAG
GCCTACGAGAAGgtcagggagggagggaaggagggagggagggagagagg
gagggagggagggagggagggagagagggagggagggcgggagggaggga
gagagagagggagggagggagagtaggtctgtgtgtcccatttcttccca
actcactcacagaaaatatatctccccctccctccctccctccctccctc
cctccctttctccctccctccctttctccctccctcctcaatccagGGCG
ACGTGAAGCGTTTGGCGGCTTTGTGCACCGAGGATCTTTACCTCAACCTC
AAGgtacctcccctccctccctccctccctccctctctctcctactccct
tcctccctctctccttcccatctcgtctttcctcactctcacctcccttt
ctctctccctccttcccttccctccccagTCCCAAATCAAGCGTTCTTCC
TCCACCGCCGCTTCCGCCAGCCCCGGGAGCAGAAAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGCGACGGGTTCTTCGCTTCCTGGCTTTCACAGGTC
CGACGGTGATAGTGCAGGGGAGGCACGTCTATAACTCGGGACGAGGAGGG
AGCAGCATGCGAACGCAGATCGGCTACGGTCAAgtaagccctccctccct
ccttccttccctccctccctccctccctccctttctccttcctcttctcg
tctctctccaatccttccttcctcccctcctgtgcctcccccccataacc
gcacgggagggaaaatgaacgtggaggataggcgtctcatttctttttcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctcccttcctccccagGTCACGGTGGTGGTCTCCTCCCGCCGGGAAGA
ATTTTATGTGGACAGCCACGGCCGAAGGCGGGAGGGAGGGAGGGAGGGAG
GGAGAGGAGGAGCGCCAGCCATTTTCGAGAATGAAAGTATCCTTGTCTTG
GAGgtgagggagggagggagggagggagggagagggagggcgagagagcg
acctcccattcatttcgaataaggatgtcgacaaaaacttttccccttgc
ctccctccctccctccctccctccctccctccctagGTGGCTTTCGCTGA
CCCAAAGGGCCGATGGCGCCTGGCGTCCATCATGGAAGAGGCGCGAAAGA
CGGACCTTGTCACCAACAGTATGGTCACGgtacgtccgccctccctccnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncc
attcgcgcttgaggatacacggtgagaaggggggaatgaaggggtgggag
ggaggggaggtgtgggcaggggcaagaagtgtctgcggtgggacggaggc
ggagcggaaaagagaagaggatagattggagggagaggagagggcttcaa
tgtagATTCTAAAAATGCTGTACCTTTTCCGGGATATTCTTGACGCGGAT
GGCTCCATCTGCTTGCTGAGGCCCAGCCATAAGGGCGCTAGGACTGGGGA
GGAAGGCAGGACGAGGAACGAGGAAGGCCATGGTGGTGGTGGTGCTAAGC
GACATCAGGAGGGAGATGAGGGAAGAAGCGAGGGCAAGGCGAGGCATCTT
AATCAGAATACTGTAGTTGAGTTGAAAGTCTGGCCGGGGGAGAGTCGGGG
CAACAATGGTTGA
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protein sequence of NO25G00200.1

>NO25G00200.1-protein ID=NO25G00200.1-protein|Name=NO25G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MLPRLCLASSRVSTSSFPRPTLALTTVSASIYRSSSSNSINRSSGIGRSK
RHWPLTSSPSFLHFVSSLQGNKQRQSRYISLLSVLNSHRSFSSRNAVVDS
YSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFG
HIRKHAKTFELKGFGKLAQSLFIDFHEAYEKGDVKRLAALCTEDLYLNLK
SQIKRSSSTAASASPGSRKGGREGGREGGRRVLRFLAFTGPTVIVQGRHV
YNSGRGGSSMRTQIGYGQVTVVVSSRREEFYVDSHGRRREGGREGGRGGA
PAIFENESILVLEVAFADPKGRWRLASIMEEARKTDLVTNSMVTILKMLY
LFRDILDADGSICLLRPSHKGARTGEEGRTRNEEGHGGGGAKRHQEGDEG
RSEGKARHLNQNTVVELKVWPGESRGNNG*
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Synonyms
Publications