NO25G00200.1, NO25G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00200.1
Unique NameNO25G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1290
Alignment locationchr25:42390..45352 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:42390..45352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00200.1 vs.
Match: EWM20371.1 (hypothetical protein Naga_101306g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 1.300e-28
Identity = 89/175 (50.86%), Postives = 110/175 (62.86%), Query Frame = 0 
Query:    7 LASSRVSTSSFPRPTLALTTVSASIYRSSSSNSINRSSGIGRSKRHWPLTSSPSFLHFVSSLQGNKQRQSRYISLLSVLNSHRSFSSRNAVVDSYSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFGHIRKHAKTFELKGFGKLAQSLFIDFHEAYEK 182
            LAS      +  RP L +  V   + RS S++S   S  I       PL  +   +  +S L     R    I  +  L+  RS S RNA+VDSYSSSGVI+DPY E  A+EKAAKE S  S+ GL+ RWAGIK +LQSGVSFGHIRKHAK+FELK FG+ A++LF+DFHEAYEK
Sbjct:   21 LASIVAGRGARLRPRLCVQVVKEGVPRSLSTSSPPASCSI-------PLIWN---MRHISRLHARPAR----IPHMPWLHVGRSLS-RNAIVDSYSSSGVIIDPYVERKAQEKAAKERSFLSLEGLKGRWAGIKGQLQSGVSFGHIRKHAKSFELKSFGQRARTLFVDFHEAYEK 180
The following BLAST results are available for this feature:
BLAST of NO25G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20371.11.300e-2850.86hypothetical protein Naga_101306g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00200NO25G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00200.1NO25G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00200.1.cds1NO25G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds2NO25G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds3NO25G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds4NO25G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds5NO25G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds6NO25G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds7NO25G00200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds8NO25G00200.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00200.1.cds9NO25G00200.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00200.1 ID=NO25G00200.1|Name=NO25G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTCCTCCTT
TCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTTATCGCA
GCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGTTCCAAA
AGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGTCTCCTC
TCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGCTTTCTG
TCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTGGACTCC
TACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAA
GGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGTGCGAGGCCTGCAAA
ATCGCTGGGCGGGAATTAAAGCCAAGCTGCAATCAGGTGTCTCATTCGGC
CACATTAGGAAGCATGCCAAGACGTTCGAGTTGAAGGGCTTCGGGAAGCT
TGCCCAATCCCTCTTCATTGACTTCCACGAGGCCTACGAGAAGGGCGACG
TGAAGCGTTTGGCGGCTTTGTGCACCGAGGATCTTTACCTCAACCTCAAG
TCCCAAATCAAGCGTTCTTCCTCCACCGCCGCTTCCGCCAGCCCCGGGAG
CAGAAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGACGGGTTCTTC
GCTTCCTGGCTTTCACAGGTCCGACGGTGATAGTGCAGGGGAGGCACGTC
TATAACTCGGGACGAGGAGGGAGCAGCATGCGAACGCAGATCGGCTACGG
TCAAGTCACGGTGGTGGTCTCCTCCCGCCGGGAAGAATTTTATGTGGACA
GCCACGGCCGAAGGCGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGGAGCG
CCAGCCATTTTCGAGAATGAAAGTATCCTTGTCTTGGAGGTGGCTTTCGC
TGACCCAAAGGGCCGATGGCGCCTGGCGTCCATCATGGAAGAGGCGCGAA
AGACGGACCTTGTCACCAACAGTATGGTCACGATTCTAAAAATGCTGTAC
CTTTTCCGGGATATTCTTGACGCGGATGGCTCCATCTGCTTGCTGAGGCC
CAGCCATAAGGGCGCTAGGACTGGGGAGGAAGGCAGGACGAGGAACGAGG
AAGGCCATGGTGGTGGTGGTGCTAAGCGACATCAGGAGGGAGATGAGGGA
AGAAGCGAGGGCAAGGCGAGGCATCTTAATCAGAATACTGTAGTTGAGTT
GAAAGTCTGGCCGGGGGAGAGTCGGGGCAACAATGGTTGA
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protein sequence of NO25G00200.1

>NO25G00200.1-protein ID=NO25G00200.1-protein|Name=NO25G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MLPRLCLASSRVSTSSFPRPTLALTTVSASIYRSSSSNSINRSSGIGRSK
RHWPLTSSPSFLHFVSSLQGNKQRQSRYISLLSVLNSHRSFSSRNAVVDS
YSSSGVILDPYFEHAAKEKAAKEISLFSVRGLQNRWAGIKAKLQSGVSFG
HIRKHAKTFELKGFGKLAQSLFIDFHEAYEKGDVKRLAALCTEDLYLNLK
SQIKRSSSTAASASPGSRKGGREGGREGGRRVLRFLAFTGPTVIVQGRHV
YNSGRGGSSMRTQIGYGQVTVVVSSRREEFYVDSHGRRREGGREGGRGGA
PAIFENESILVLEVAFADPKGRWRLASIMEEARKTDLVTNSMVTILKMLY
LFRDILDADGSICLLRPSHKGARTGEEGRTRNEEGHGGGGAKRHQEGDEG
RSEGKARHLNQNTVVELKVWPGESRGNNG*
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mRNA from alignment at chr25:42390..45352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00200.1 ID=NO25G00200.1|Name=NO25G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2963bp|location=Sequence derived from alignment at chr25:42390..45352+ (Nannochloropsis oceanica)
ATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTCCTCCTT
TCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTTATCGCA
GCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGTTCCAAA
AGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGTCTCCTC
TCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGCTTTCTG
TCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTGGTGAGT
ATTTCTGTCCCTCCCTTCCTCCTCCCTTCCCACCCTCCCTCCCTCCCTCT
AACCTCCTTTCCTTCCCTCCTTCTGCTTAGGACTCCTACTCCTCCTCCGG
CGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAAGGAAAAAGCAGCCA
AGGAGATCTCTCTGTTCTCAGTGCGAGGTAGAAAGGGAGGGAAGGGAGGG
AAGGTGAGACGAAGGAGAAGGAGGGGGAAAAGGAAAAAGTGACTCAAAAA
GCGCTTTCAAAAACGATTACTTAACAGGCCTGCAAAATCGCTGGGCGGGA
ATTAAAGCCAAGGTGAGTTGATGGAAAGTCGGCACTGGCCTCTATGGATC
TGGGCGATGAAATTTTTAGAAAAAATATTTTATATTTTTTATTAATTAAA
TTAATTATTTTAATTAATGAATTTACGAATTTAATCATCTTATATTTCTA
TTCTAATGTCCTGTCTACCACTCCAATAGCTGCAATTGTTTTTATTATTT
ATTATTATTATTATATATTATTAAATTATGAAAATATTTTATTTTAATCA
TCTTATATTTCTATTCTAATGTCCTGTCTACCACTTCAATAGCTGCAATT
GTTTTTATTATTTATTATTATTATAATAATAAATTTTTAACTCATGAAAA
TATTTTATTTTAATCATCTTATATTTCTATTCTAATGTCCTGTCTACCAC
TCCTGTAGCTGCAATTGTTTTTATTAACTTATGGAAATATTTTATTTTAA
TCATCCTATCTTCCTATTCTAATGTCATGTCTACCACTCCTGTAGCTGCA
ATCAGGTGTCTCATTCGGCCACATTAGGAAGCATGCCAAGACGTTCGAGT
TGAAGGGCTTCGGGAAGCTTGCCCAATCCCTCTTCATTGACTTCCACGAG
GCCTACGAGAAGGTCAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGAGAGG
GAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCGGGAGGGAGGGA
GAGAGAGAGGGAGGGAGGGAGAGTAGGTCTGTGTGTCCCATTTCTTCCCA
ACTCACTCACAGAAAATATATCTCCCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTTTCTCCCTCCCTCCCTTTCTCCCTCCCTCCTCAATCCAGGGCG
ACGTGAAGCGTTTGGCGGCTTTGTGCACCGAGGATCTTTACCTCAACCTC
AAGGTACCTCCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCCTACTCCCT
TCCTCCCTCTCTCCTTCCCATCTCGTCTTTCCTCACTCTCACCTCCCTTT
CTCTCTCCCTCCTTCCCTTCCCTCCCCAGTCCCAAATCAAGCGTTCTTCC
TCCACCGCCGCTTCCGCCAGCCCCGGGAGCAGAAAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGCGACGGGTTCTTCGCTTCCTGGCTTTCACAGGTC
CGACGGTGATAGTGCAGGGGAGGCACGTCTATAACTCGGGACGAGGAGGG
AGCAGCATGCGAACGCAGATCGGCTACGGTCAAGTAAGCCCTCCCTCCCT
CCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCTTCCTCTTCTCG
TCTCTCTCCAATCCTTCCTTCCTCCCCTCCTGTGCCTCCCCCCCATAACC
GCACGGGAGGGAAAATGAACGTGGAGGATAGGCGTCTCATTTCTTTTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCCAGGTCACGGTGGTGGTCTCCTCCCGCCGGGAAGA
ATTTTATGTGGACAGCCACGGCCGAAGGCGGGAGGGAGGGAGGGAGGGAG
GGAGAGGAGGAGCGCCAGCCATTTTCGAGAATGAAAGTATCCTTGTCTTG
GAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGAGGGCGAGAGAGCG
ACCTCCCATTCATTTCGAATAAGGATGTCGACAAAAACTTTTCCCCTTGC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGTGGCTTTCGCTGA
CCCAAAGGGCCGATGGCGCCTGGCGTCCATCATGGAAGAGGCGCGAAAGA
CGGACCTTGTCACCAACAGTATGGTCACGGTACGTCCGCCCTCCCTCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
ATTCGCGCTTGAGGATACACGGTGAGAAGGGGGGAATGAAGGGGTGGGAG
GGAGGGGAGGTGTGGGCAGGGGCAAGAAGTGTCTGCGGTGGGACGGAGGC
GGAGCGGAAAAGAGAAGAGGATAGATTGGAGGGAGAGGAGAGGGCTTCAA
TGTAGATTCTAAAAATGCTGTACCTTTTCCGGGATATTCTTGACGCGGAT
GGCTCCATCTGCTTGCTGAGGCCCAGCCATAAGGGCGCTAGGACTGGGGA
GGAAGGCAGGACGAGGAACGAGGAAGGCCATGGTGGTGGTGGTGCTAAGC
GACATCAGGAGGGAGATGAGGGAAGAAGCGAGGGCAAGGCGAGGCATCTT
AATCAGAATACTGTAGTTGAGTTGAAAGTCTGGCCGGGGGAGAGTCGGGG
CAACAATGGTTGA
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Coding sequence (CDS) from alignment at chr25:42390..45352+

>NO25G00200.1 ID=NO25G00200.1|Name=NO25G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr25:42390..45352+ (Nannochloropsis oceanica)
ATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTCCTCCTT
TCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTTATCGCA
GCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGTTCCAAA
AGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGTCTCCTC
TCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGCTTTCTG
TCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTGGACTCC
TACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAA
GGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGTGCGAGGCCTGCAAA
ATCGCTGGGCGGGAATTAAAGCCAAGCTGCAATCAGGTGTCTCATTCGGC
CACATTAGGAAGCATGCCAAGACGTTCGAGTTGAAGGGCTTCGGGAAGCT
TGCCCAATCCCTCTTCATTGACTTCCACGAGGCCTACGAGAAGGGCGACG
TGAAGCGTTTGGCGGCTTTGTGCACCGAGGATCTTTACCTCAACCTCAAG
TCCCAAATCAAGCGTTCTTCCTCCACCGCCGCTTCCGCCAGCCCCGGGAG
CAGAAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGACGGGTTCTTC
GCTTCCTGGCTTTCACAGGTCCGACGGTGATAGTGCAGGGGAGGCACGTC
TATAACTCGGGACGAGGAGGGAGCAGCATGCGAACGCAGATCGGCTACGG
TCAAGTCACGGTGGTGGTCTCCTCCCGCCGGGAAGAATTTTATGTGGACA
GCCACGGCCGAAGGCGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGGAGCG
CCAGCCATTTTCGAGAATGAAAGTATCCTTGTCTTGGAGGTGGCTTTCGC
TGACCCAAAGGGCCGATGGCGCCTGGCGTCCATCATGGAAGAGGCGCGAA
AGACGGACCTTGTCACCAACAGTATGGTCACGATTCTAAAAATGCTGTAC
CTTTTCCGGGATATTCTTGACGCGGATGGCTCCATCTGCTTGCTGAGGCC
CAGCCATAAGGGCGCTAGGACTGGGGAGGAAGGCAGGACGAGGAACGAGG
AAGGCCATGGTGGTGGTGGTGCTAAGCGACATCAGGAGGGAGATGAGGGA
AGAAGCGAGGGCAAGGCGAGGCATCTTAATCAGAATACTGTAGTTGAGTT
GAAAGTCTGGCCGGGGGAGAGTCGGGGCAACAATGGTTGA
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Synonyms
Publications