NO25G00180, NO25G00180 (gene) Nannochloropsis oceanica

Overview
NameNO25G00180
Unique NameNO25G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr25:37658..39520 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:37658..39520 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR000116HMGA
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00180.1NO25G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641904gene_8497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00180.1NO25G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00180 ID=NO25G00180|Name=NO25G00180|organism=Nannochloropsis oceanica|type=gene|length=1863bp
ATGATGCCACACGCAGGACAAGGCGACGGTGTACCCGCGCATATGGAAGA
CCAAACAATGGAAGCAGCAGCAACAGCTGAAGAGCAAGGAGAGGAACGTA
CCCCTCCGTCGTCGCCTGAGGTGGGAGGAGAGGAAGGAGGGTTGGAGGTG
GTGGAGGTGGCGAGGTCAGATGAGGGAGAGGCCTCGGAGGAGGAGACGGA
GGAAGAAAAGGAGGAGGAGGATGGTAGCAGCAGCAGGAGCAGCAGCCCAA
GCAGGAAGAGGATGCAAGAGGACGAGAAGAAGGCGAGCAGCCGGAAGAGG
ACCAAGAAGGAGGAGGAAGTAAGAGATGCAAAAGGAGGGGAAGGGGCAAG
TCGTGACGGCAGCTCCTGCACTGTCTGTCCACCTACAAAGCAAAAGCCGA
ATGTTGAGCAGGAGGAGGAGGGAGGGAAGGAGGTAGGAGTGGAGGAGGAG
GAAGAGGAGGAACAGGAGGAGGAAAAGGAGGAGGAGGAGGAGATGGAGAT
TGTTATCTCCCCTTCTTCCTCCATGGAGTCAGGAGAGGGAAGGAGAGAGG
GGAGGGAAAAAAAAACGACAGTGGAGGCTCCCGTGAAACGTGGGAGAGGC
CGACCTAGGAAGGGGACTGCTGGAGGAGGAGGAGGAGGGGTTGTCATTCC
CCCTTCCTCCTCGATGGAAAAAGGAGAGAAAGAGGGGGAGAGTGGAGAGA
AAGAAGAGAAAATGGAGGCTCCGGTAAAACGGGGTCGGGGCCGACCAAGG
AAGAGGACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGTAGTGATGAAGG
AAGCCGCTACAGCGGTCAGAGGAAAGAAAAGAGGCCGCCCTTCTAAGGCT
GAGCTGGCGACAAGAGAAGGAGTGGTAGCGGCAGCAGCAACAACAGTAGC
AGCAATAACAGGAAGAGGGGGAGGGGGAGAGGGAGGGGGAGTGAGGAAGA
GGGGCCGTCCCTCCAAAGCTGATCTGGCGGCAAGAGGTGGAGGAGGAGGA
AGAAGAGAAGGAGGAGAAGGTCGTGGAGGAGGAGGAGCAGGAGGACGAGA
GGGCTGTAAACTGAGCATCGCTCCCGCATTCGCAGCGACAGGGCAGCCGg
tacgcgtctttcccctccctccctccctccctccttccctgtctcacctg
gtgcgatgccaaggctgacatagactgaagacgtcgtcgtattccacgcc
cctgccgctcgctttcttttctatctccgtttcgtcttcccccccctccc
ttcttctttccctctcttttcccctttccctccctgatatttggagaaac
atacaccctaacgccccctaccacccccctccctccctccctccctccct
ccctagGCCAAGCGTGGTCGTGGGCGGCCTCGCAAACCAAAGCCTAAAAT
AGTGTACGATAAAGCAACATTAATGGCCAATGTGCGGCTCTACCTTGGAG
AGGGCGGGAAGGAGGGCGAGAAGGAGGCAGGGGGGGAAGGAGGGAGGGAG
ACGCCGAACAGGGAAGTGTTGGCGTGGATGGAGGGAGCGAAAGAGGAAGT
GGTTGAGGCCCTGGTGCATGCCGTGGTAGAGTGCTTGGAAGCCTAGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGCTCAGGAGAGAGGGAGGGGGAAGGGA
TGAGGGAGACTCTGTAATAAAGAGCAGAGGGGGGTCACGTTTAGATGTAT
GATAGCAAGCATGAAAGATGACACAAATAAAGGTACCGAATGAGCGAAAC
AAGTACATAGTCCACCTTCTCCACCTCCTCCTTATCGTTCTCCTCCTCCT
CCTCCTCCTCCTT
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protein sequence of NO25G00180.1

>NO25G00180.1-protein ID=NO25G00180.1-protein|Name=NO25G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MMPHAGQGDGVPAHMEDQTMEAAATAEEQGEERTPPSSPEVGGEEGGLEV
VEVARSDEGEASEEETEEEKEEEDGSSSRSSSPSRKRMQEDEKKASSRKR
TKKEEEVRDAKGGEGASRDGSSCTVCPPTKQKPNVEQEEEGGKEVGVEEE
EEEEQEEEKEEEEEMEIVISPSSSMESGEGRREGREKKTTVEAPVKRGRG
RPRKGTAGGGGGGVVIPPSSSMEKGEKEGESGEKEEKMEAPVKRGRGRPR
KRTGGGGGGGGGGGGGGGGGGGGGGGGGKVVMKEAATAVRGKKRGRPSKA
ELATREGVVAAAATTVAAITGRGGGGEGGGVRKRGRPSKADLAARGGGGG
RREGGEGRGGGGAGGREGCKLSIAPAFAATGQPAKRGRGRPRKPKPKIVY
DKATLMANVRLYLGEGGKEGEKEAGGEGGRETPNREVLAWMEGAKEEVVE
ALVHAVVECLEA*
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Synonyms
Publications