NO25G00180.1, NO25G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00180.1
Unique NameNO25G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1606
Alignment locationchr25:37658..39520 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:37658..39520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00180NO25G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00180.1NO25G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00180.1.cds1NO25G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00180.1.cds2NO25G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00180.1 ID=NO25G00180.1|Name=NO25G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp
ATGATGCCACACGCAGGACAAGGCGACGGTGTACCCGCGCATATGGAAGA
CCAAACAATGGAAGCAGCAGCAACAGCTGAAGAGCAAGGAGAGGAACGTA
CCCCTCCGTCGTCGCCTGAGGTGGGAGGAGAGGAAGGAGGGTTGGAGGTG
GTGGAGGTGGCGAGGTCAGATGAGGGAGAGGCCTCGGAGGAGGAGACGGA
GGAAGAAAAGGAGGAGGAGGATGGTAGCAGCAGCAGGAGCAGCAGCCCAA
GCAGGAAGAGGATGCAAGAGGACGAGAAGAAGGCGAGCAGCCGGAAGAGG
ACCAAGAAGGAGGAGGAAGTAAGAGATGCAAAAGGAGGGGAAGGGGCAAG
TCGTGACGGCAGCTCCTGCACTGTCTGTCCACCTACAAAGCAAAAGCCGA
ATGTTGAGCAGGAGGAGGAGGGAGGGAAGGAGGTAGGAGTGGAGGAGGAG
GAAGAGGAGGAACAGGAGGAGGAAAAGGAGGAGGAGGAGGAGATGGAGAT
TGTTATCTCCCCTTCTTCCTCCATGGAGTCAGGAGAGGGAAGGAGAGAGG
GGAGGGAAAAAAAAACGACAGTGGAGGCTCCCGTGAAACGTGGGAGAGGC
CGACCTAGGAAGGGGACTGCTGGAGGAGGAGGAGGAGGGGTTGTCATTCC
CCCTTCCTCCTCGATGGAAAAAGGAGAGAAAGAGGGGGAGAGTGGAGAGA
AAGAAGAGAAAATGGAGGCTCCGGTAAAACGGGGTCGGGGCCGACCAAGG
AAGAGGACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGTAGTGATGAAGG
AAGCCGCTACAGCGGTCAGAGGAAAGAAAAGAGGCCGCCCTTCTAAGGCT
GAGCTGGCGACAAGAGAAGGAGTGGTAGCGGCAGCAGCAACAACAGTAGC
AGCAATAACAGGAAGAGGGGGAGGGGGAGAGGGAGGGGGAGTGAGGAAGA
GGGGCCGTCCCTCCAAAGCTGATCTGGCGGCAAGAGGTGGAGGAGGAGGA
AGAAGAGAAGGAGGAGAAGGTCGTGGAGGAGGAGGAGCAGGAGGACGAGA
GGGCTGTAAACTGAGCATCGCTCCCGCATTCGCAGCGACAGGGCAGCCGG
CCAAGCGTGGTCGTGGGCGGCCTCGCAAACCAAAGCCTAAAATAGTGTAC
GATAAAGCAACATTAATGGCCAATGTGCGGCTCTACCTTGGAGAGGGCGG
GAAGGAGGGCGAGAAGGAGGCAGGGGGGGAAGGAGGGAGGGAGACGCCGA
ACAGGGAAGTGTTGGCGTGGATGGAGGGAGCGAAAGAGGAAGTGGTTGAG
GCCCTGGTGCATGCCGTGGTAGAGTGCTTGGAAGCCTAGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGCTCAGGAGAGAGGGAGGGGGAAGGGATGAGGGA
GACTCTGTAATAAAGAGCAGAGGGGGGTCACGTTTAGATGTATGATAGCA
AGCATGAAAGATGACACAAATAAAGGTACCGAATGAGCGAAACAAGTACA
TAGTCCACCTTCTCCACCTCCTCCTTATCGTTCTCCTCCTCCTCCTCCTC
CTCCTT
back to top

protein sequence of NO25G00180.1

>NO25G00180.1-protein ID=NO25G00180.1-protein|Name=NO25G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MMPHAGQGDGVPAHMEDQTMEAAATAEEQGEERTPPSSPEVGGEEGGLEV
VEVARSDEGEASEEETEEEKEEEDGSSSRSSSPSRKRMQEDEKKASSRKR
TKKEEEVRDAKGGEGASRDGSSCTVCPPTKQKPNVEQEEEGGKEVGVEEE
EEEEQEEEKEEEEEMEIVISPSSSMESGEGRREGREKKTTVEAPVKRGRG
RPRKGTAGGGGGGVVIPPSSSMEKGEKEGESGEKEEKMEAPVKRGRGRPR
KRTGGGGGGGGGGGGGGGGGGGGGGGGGKVVMKEAATAVRGKKRGRPSKA
ELATREGVVAAAATTVAAITGRGGGGEGGGVRKRGRPSKADLAARGGGGG
RREGGEGRGGGGAGGREGCKLSIAPAFAATGQPAKRGRGRPRKPKPKIVY
DKATLMANVRLYLGEGGKEGEKEAGGEGGRETPNREVLAWMEGAKEEVVE
ALVHAVVECLEA*
back to top

mRNA from alignment at chr25:37658..39520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00180.1 ID=NO25G00180.1|Name=NO25G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr25:37658..39520+ (Nannochloropsis oceanica)
ATGATGCCACACGCAGGACAAGGCGACGGTGTACCCGCGCATATGGAAGA
CCAAACAATGGAAGCAGCAGCAACAGCTGAAGAGCAAGGAGAGGAACGTA
CCCCTCCGTCGTCGCCTGAGGTGGGAGGAGAGGAAGGAGGGTTGGAGGTG
GTGGAGGTGGCGAGGTCAGATGAGGGAGAGGCCTCGGAGGAGGAGACGGA
GGAAGAAAAGGAGGAGGAGGATGGTAGCAGCAGCAGGAGCAGCAGCCCAA
GCAGGAAGAGGATGCAAGAGGACGAGAAGAAGGCGAGCAGCCGGAAGAGG
ACCAAGAAGGAGGAGGAAGTAAGAGATGCAAAAGGAGGGGAAGGGGCAAG
TCGTGACGGCAGCTCCTGCACTGTCTGTCCACCTACAAAGCAAAAGCCGA
ATGTTGAGCAGGAGGAGGAGGGAGGGAAGGAGGTAGGAGTGGAGGAGGAG
GAAGAGGAGGAACAGGAGGAGGAAAAGGAGGAGGAGGAGGAGATGGAGAT
TGTTATCTCCCCTTCTTCCTCCATGGAGTCAGGAGAGGGAAGGAGAGAGG
GGAGGGAAAAAAAAACGACAGTGGAGGCTCCCGTGAAACGTGGGAGAGGC
CGACCTAGGAAGGGGACTGCTGGAGGAGGAGGAGGAGGGGTTGTCATTCC
CCCTTCCTCCTCGATGGAAAAAGGAGAGAAAGAGGGGGAGAGTGGAGAGA
AAGAAGAGAAAATGGAGGCTCCGGTAAAACGGGGTCGGGGCCGACCAAGG
AAGAGGACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGTAGTGATGAAGG
AAGCCGCTACAGCGGTCAGAGGAAAGAAAAGAGGCCGCCCTTCTAAGGCT
GAGCTGGCGACAAGAGAAGGAGTGGTAGCGGCAGCAGCAACAACAGTAGC
AGCAATAACAGGAAGAGGGGGAGGGGGAGAGGGAGGGGGAGTGAGGAAGA
GGGGCCGTCCCTCCAAAGCTGATCTGGCGGCAAGAGGTGGAGGAGGAGGA
AGAAGAGAAGGAGGAGAAGGTCGTGGAGGAGGAGGAGCAGGAGGACGAGA
GGGCTGTAAACTGAGCATCGCTCCCGCATTCGCAGCGACAGGGCAGCCGG
TACGCGTCTTTCCCCTCCCTCCCTCCCTCCCTCCTTCCCTGTCTCACCTG
GTGCGATGCCAAGGCTGACATAGACTGAAGACGTCGTCGTATTCCACGCC
CCTGCCGCTCGCTTTCTTTTCTATCTCCGTTTCGTCTTCCCCCCCCTCCC
TTCTTCTTTCCCTCTCTTTTCCCCTTTCCCTCCCTGATATTTGGAGAAAC
ATACACCCTAACGCCCCCTACCACCCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTAGGCCAAGCGTGGTCGTGGGCGGCCTCGCAAACCAAAGCCTAAAAT
AGTGTACGATAAAGCAACATTAATGGCCAATGTGCGGCTCTACCTTGGAG
AGGGCGGGAAGGAGGGCGAGAAGGAGGCAGGGGGGGAAGGAGGGAGGGAG
ACGCCGAACAGGGAAGTGTTGGCGTGGATGGAGGGAGCGAAAGAGGAAGT
GGTTGAGGCCCTGGTGCATGCCGTGGTAGAGTGCTTGGAAGCCTAGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGCTCAGGAGAGAGGGAGGGGGAAGGGA
TGAGGGAGACTCTGTAATAAAGAGCAGAGGGGGGTCACGTTTAGATGTAT
GATAGCAAGCATGAAAGATGACACAAATAAAGGTACCGAATGAGCGAAAC
AAGTACATAGTCCACCTTCTCCACCTCCTCCTTATCGTTCTCCTCCTCCT
CCTCCTCCTCCTT
back to top

Coding sequence (CDS) from alignment at chr25:37658..39520+

>NO25G00180.1 ID=NO25G00180.1|Name=NO25G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr25:37658..39520+ (Nannochloropsis oceanica)
ATGATGCCACACGCAGGACAAGGCGACGGTGTACCCGCGCATATGGAAGA
CCAAACAATGGAAGCAGCAGCAACAGCTGAAGAGCAAGGAGAGGAACGTA
CCCCTCCGTCGTCGCCTGAGGTGGGAGGAGAGGAAGGAGGGTTGGAGGTG
GTGGAGGTGGCGAGGTCAGATGAGGGAGAGGCCTCGGAGGAGGAGACGGA
GGAAGAAAAGGAGGAGGAGGATGGTAGCAGCAGCAGGAGCAGCAGCCCAA
GCAGGAAGAGGATGCAAGAGGACGAGAAGAAGGCGAGCAGCCGGAAGAGG
ACCAAGAAGGAGGAGGAAGTAAGAGATGCAAAAGGAGGGGAAGGGGCAAG
TCGTGACGGCAGCTCCTGCACTGTCTGTCCACCTACAAAGCAAAAGCCGA
ATGTTGAGCAGGAGGAGGAGGGAGGGAAGGAGGTAGGAGTGGAGGAGGAG
GAAGAGGAGGAACAGGAGGAGGAAAAGGAGGAGGAGGAGGAGATGGAGAT
TGTTATCTCCCCTTCTTCCTCCATGGAGTCAGGAGAGGGAAGGAGAGAGG
GGAGGGAAAAAAAAACGACAGTGGAGGCTCCCGTGAAACGTGGGAGAGGC
CGACCTAGGAAGGGGACTGCTGGAGGAGGAGGAGGAGGGGTTGTCATTCC
CCCTTCCTCCTCGATGGAAAAAGGAGAGAAAGAGGGGGAGAGTGGAGAGA
AAGAAGAGAAAATGGAGGCTCCGGTAAAACGGGGTCGGGGCCGACCAAGG
AAGAGGACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGTAGTGATGAAGG
AAGCCGCTACAGCGGTCAGAGGAAAGAAAAGAGGCCGCCCTTCTAAGGCT
GAGCTGGCGACAAGAGAAGGAGTGGTAGCGGCAGCAGCAACAACAGTAGC
AGCAATAACAGGAAGAGGGGGAGGGGGAGAGGGAGGGGGAGTGAGGAAGA
GGGGCCGTCCCTCCAAAGCTGATCTGGCGGCAAGAGGTGGAGGAGGAGGA
AGAAGAGAAGGAGGAGAAGGTCGTGGAGGAGGAGGAGCAGGAGGACGAGA
GGGCTGTAAACTGAGCATCGCTCCCGCATTCGCAGCGACAGGGCAGCCGG
CCAAGCGTGGTCGTGGGCGGCCTCGCAAACCAAAGCCTAAAATAGTGTAC
GATAAAGCAACATTAATGGCCAATGTGCGGCTCTACCTTGGAGAGGGCGG
GAAGGAGGGCGAGAAGGAGGCAGGGGGGGAAGGAGGGAGGGAGACGCCGA
ACAGGGAAGTGTTGGCGTGGATGGAGGGAGCGAAAGAGGAAGTGGTTGAG
GCCCTGGTGCATGCCGTGGTAGAGTGCTTGGAAGCCTAG
back to top
Synonyms
Publications