NO25G00140, NO25G00140 (gene) Nannochloropsis oceanica

Overview
NameNO25G00140
Unique NameNO25G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr25:25840..27181 -

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Properties
Property NameValue
DescriptionSelenoprotein u
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:25840..27181 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032801FAM213/AAED1
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Homology
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: KJB71158.1 (hypothetical protein B456_011G108500 [Gossypium raimondii])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 0 
Query:   45 GNFRLQATPKPVSGTKLITEVGAS----PLYRADGKEVQFKDLYLPPKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            GN R  A     S  +  T +G       ++ A G+ V FKDL+            V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:   51 GNSRFMARVSSSSAAEFPTNIGDKLSDVTIFTASGQPVLFKDLW--------DQNEVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 194
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_012455556.1 (PREDICTED: uncharacterized protein LOC105777050 isoform X2 [Gossypium raimondii])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 0 
Query:   45 GNFRLQATPKPVSGTKLITEVGAS----PLYRADGKEVQFKDLYLPPKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            GN R  A     S  +  T +G       ++ A G+ V FKDL+            V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  112 GNSRFMARVSSSSAAEFPTNIGDKLSDVTIFTASGQPVLFKDLW--------DQNEVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 255
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_005649951.1 (hypothetical protein COCSUDRAFT_61626 [Coccomyxa subellipsoidea C-169] >EIE25407.1 hypothetical protein COCSUDRAFT_61626 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 75.1 bits (183), Expect = 2.900e-10
Identity = 48/147 (32.65%), Postives = 71/147 (48.30%), Query Frame = 0 
Query:   65 VGASPLYRADGKEVQFKDLYLPPKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEVLAAAVAK 212
            + A P + A G ++    + +P K GKLF E V FP  LL+ DP   AY  +  Y+ +GR FF+RAT  A       ++ K  +  Y      P       QQGG+ +  + G       E+++ H D GT  HA  ++V+AA   K
Sbjct:   43 LAAKPEFDAVGVDLVALSVGVPEK-GKLFCERVPFPEELLFLDPDRLAYSELALYEGIGRTFFSRATPAALSGL-NFDKFKEAVKGYTFDMTKPPKNDDAFQQGGLFI--FDG------AEVLYAHKDAGTADHAPMADVIAACCGK 179
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: KJB71155.1 (hypothetical protein B456_011G108500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  143 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 248
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: KJB71156.1 (hypothetical protein B456_011G108500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:   36 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 141
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_012455555.1 (PREDICTED: thioredoxin-like protein AAED1, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  204 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 309
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_017614211.1 (PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Gossypium arboreum])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  145 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 250
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: PPD95285.1 (hypothetical protein GOBAR_DD07693 [Gossypium barbadense])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  143 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 248
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_016698733.1 (PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Gossypium hirsutum])

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-9
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:   87 PKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            P   ++ AE V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   D+GTG HA   ++
Sbjct:  143 PDRARILAERVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDKGTGDHAPLDDI 248
[Close]
BLAST of NO25G00140 vs. NCBI_GenBank
Match: XP_022739535.1 (thioredoxin-like protein AAED1, chloroplastic [Durio zibethinus])

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-9
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 0 
Query:   67 ASPLYRADGKEVQFKDLYLPPKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            A P + + G ++    +  P KA ++ AE + FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P D S  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:  121 AKPKFDSAGVKLIAVGVGTPDKA-RILAERLPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTM-KATPDDKSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 245
The following BLAST results are available for this feature:
BLAST of NO25G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KJB71158.14.500e-1134.15hypothetical protein B456_011G108500 [Gossypium ra... [more]
XP_012455556.14.500e-1134.15PREDICTED: uncharacterized protein LOC105777050 is... [more]
XP_005649951.12.900e-1032.65hypothetical protein COCSUDRAFT_61626 [Coccomyxa s... [more]
KJB71155.11.500e-938.14hypothetical protein B456_011G108500 [Gossypium ra... [more]
KJB71156.11.500e-938.14hypothetical protein B456_011G108500 [Gossypium ra... [more]
XP_012455555.11.500e-938.14PREDICTED: thioredoxin-like protein AAED1, chlorop... [more]
XP_017614211.11.500e-938.14PREDICTED: thioredoxin-like protein AAED1, chlorop... [more]
PPD95285.11.500e-938.14hypothetical protein GOBAR_DD07693 [Gossypium barb... [more]
XP_016698733.14.200e-937.29PREDICTED: thioredoxin-like protein AAED1, chlorop... [more]
XP_022739535.14.200e-934.78thioredoxin-like protein AAED1, chloroplastic [Dur... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00140.1NO25G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656310gene_8493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00140.1NO25G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00140 ID=NO25G00140|Name=NO25G00140|organism=Nannochloropsis oceanica|type=gene|length=1342bp
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGgtcagtgcctgatcacaatcatct
ttcattcccctttgctttcttcatctccgtaggctttttccttgcaatct
tacgatgccccctctcatccggttaccctcccttccccacacccacacag
CCGCGCGGCAACTTCCGCCTTCAGGCTACACCCAAGCCCGTCTCTGGCAC
GAAATTGATCACCGAAGTGGGCGCCAGTCCTCTTTATCGCGCGGATGGCA
AGGAGGTGCAATTTAAGGACCTCTATCTGCCGCCTAAAGgttcggagggg
aaagaaggcgcaaacattctgatcttccttcgccatttcgggtaaggatg
aaggacgggaaggaaacaaaagcgaaaagagtggtgaaagggatatactt
cttggcctcccactttgctgagctatatcatatgtctccccaccattggc
attggcctgccttgcttaccctctttcctcactcactgatttccagctga
ctattgtgttgggaggcggccgttgacattaagaacaacctgctgccttc
catcgcctccctccctccctccacctcctcctcccccttctcctccctcc
tctcccctgctcctccgtcccgccctcccaccctggcggtcatcggtatt
ggggacgccgaagCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCTCC
CAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGGGT
TCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGGCC
TTCAAAGACAAGGGGAAGCAAGAGCGGgtaagtccggggactgtacacac
aaaaatatgaagggaacgaacagacttcggattgttgggtttacaagcgt
ttgtgggtccgtagattcttcgtctgcagactgcagtctgtagccttttt
gtatcacggagtctgcactcggttctttcgctgacaaggtctatatctgc
ttactctctgtttgtcctgtcttgtcgtaccacagGTTAAGGCCCTTCTT
CCTAGTTACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGT
GCAACAAGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGA
AAGAGGGGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCAC
GCCGATTGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAA
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protein sequence of NO25G00140.1

>NO25G00140.1-protein ID=NO25G00140.1-protein|Name=NO25G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MARPRSSFPERAATLLLAVIVGLLLREDLVHAAFVKPLGATQPRGNFRLQ
ATPKPVSGTKLITEVGASPLYRADGKEVQFKDLYLPPKAGKLFAETVDFP
PNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPS
YKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHAD
WSEVLAAAVAK*
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Synonyms
Publications