NO25G00140.1, NO25G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00140.1
Unique NameNO25G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length636
Alignment locationchr25:25840..27181 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:25840..27181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00140.1 vs.
Match: KJB71158.1 (hypothetical protein B456_011G108500 [Gossypium raimondii])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 0 
Query:   45 GNFRLQATPKPVSGTKLITEVGAS----PLYRADGKEVQFKDLYLPPKAGKLFAETVDFPPNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPSYKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHADWSEV 205
            GN R  A     S  +  T +G       ++ A G+ V FKDL+            V FP + LYADP   AY  +G Y  LGR FF  A+ + F    + ++VK  + +Y   K  P DTS  +QQGG+ V K  GK      ++++   DEGTG HA   ++
Sbjct:   51 GNSRFMARVSSSSAAEFPTNIGDKLSDVTIFTASGQPVLFKDLW--------DQNEVPFPMDSLYADPERKAYDVLGLYYGLGRTFFNPASAKVF---SRLDKVKKAMENYTI-KATPDDTSSVLQQGGMFVFK--GK------QLLYARKDEGTGDHAPLDDI 194
The following BLAST results are available for this feature:
BLAST of NO25G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KJB71158.14.500e-1134.15hypothetical protein B456_011G108500 [Gossypium ra... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00140NO25G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00140.1NO25G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00140.1.cds1NO25G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00140.1.cds2NO25G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00140.1.cds3NO25G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00140.1.cds4NO25G00140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00140.1 ID=NO25G00140.1|Name=NO25G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGCCGCGCGGCAACTTCCGCCTTCAG
GCTACACCCAAGCCCGTCTCTGGCACGAAATTGATCACCGAAGTGGGCGC
CAGTCCTCTTTATCGCGCGGATGGCAAGGAGGTGCAATTTAAGGACCTCT
ATCTGCCGCCTAAAGCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCT
CCCAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGG
GTTCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGG
CCTTCAAAGACAAGGGGAAGCAAGAGCGGGTTAAGGCCCTTCTTCCTAGT
TACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGTGCAACA
AGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGAAAGAGG
GGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCACGCCGAT
TGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAA
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protein sequence of NO25G00140.1

>NO25G00140.1-protein ID=NO25G00140.1-protein|Name=NO25G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MARPRSSFPERAATLLLAVIVGLLLREDLVHAAFVKPLGATQPRGNFRLQ
ATPKPVSGTKLITEVGASPLYRADGKEVQFKDLYLPPKAGKLFAETVDFP
PNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPS
YKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHAD
WSEVLAAAVAK*
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mRNA from alignment at chr25:25840..27181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00140.1 ID=NO25G00140.1|Name=NO25G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at chr25:25840..27181- (Nannochloropsis oceanica)
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGGTCAGTGCCTGATCACAATCATCT
TTCATTCCCCTTTGCTTTCTTCATCTCCGTAGGCTTTTTCCTTGCAATCT
TACGATGCCCCCTCTCATCCGGTTACCCTCCCTTCCCCACACCCACACAG
CCGCGCGGCAACTTCCGCCTTCAGGCTACACCCAAGCCCGTCTCTGGCAC
GAAATTGATCACCGAAGTGGGCGCCAGTCCTCTTTATCGCGCGGATGGCA
AGGAGGTGCAATTTAAGGACCTCTATCTGCCGCCTAAAGGTTCGGAGGGG
AAAGAAGGCGCAAACATTCTGATCTTCCTTCGCCATTTCGGGTAAGGATG
AAGGACGGGAAGGAAACAAAAGCGAAAAGAGTGGTGAAAGGGATATACTT
CTTGGCCTCCCACTTTGCTGAGCTATATCATATGTCTCCCCACCATTGGC
ATTGGCCTGCCTTGCTTACCCTCTTTCCTCACTCACTGATTTCCAGCTGA
CTATTGTGTTGGGAGGCGGCCGTTGACATTAAGAACAACCTGCTGCCTTC
CATCGCCTCCCTCCCTCCCTCCACCTCCTCCTCCCCCTTCTCCTCCCTCC
TCTCCCCTGCTCCTCCGTCCCGCCCTCCCACCCTGGCGGTCATCGGTATT
GGGGACGCCGAAGCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCTCC
CAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGGGT
TCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGGCC
TTCAAAGACAAGGGGAAGCAAGAGCGGGTAAGTCCGGGGACTGTACACAC
AAAAATATGAAGGGAACGAACAGACTTCGGATTGTTGGGTTTACAAGCGT
TTGTGGGTCCGTAGATTCTTCGTCTGCAGACTGCAGTCTGTAGCCTTTTT
GTATCACGGAGTCTGCACTCGGTTCTTTCGCTGACAAGGTCTATATCTGC
TTACTCTCTGTTTGTCCTGTCTTGTCGTACCACAGGTTAAGGCCCTTCTT
CCTAGTTACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGT
GCAACAAGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGA
AAGAGGGGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCAC
GCCGATTGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAA
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Coding sequence (CDS) from alignment at chr25:25840..27181-

>NO25G00140.1 ID=NO25G00140.1|Name=NO25G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at chr25:25840..27181- (Nannochloropsis oceanica)
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGCCGCGCGGCAACTTCCGCCTTCAG
GCTACACCCAAGCCCGTCTCTGGCACGAAATTGATCACCGAAGTGGGCGC
CAGTCCTCTTTATCGCGCGGATGGCAAGGAGGTGCAATTTAAGGACCTCT
ATCTGCCGCCTAAAGCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCT
CCCAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGG
GTTCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGG
CCTTCAAAGACAAGGGGAAGCAAGAGCGGGTTAAGGCCCTTCTTCCTAGT
TACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGTGCAACA
AGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGAAAGAGG
GGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCACGCCGAT
TGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAA
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Synonyms
Publications