NO25G00100, NO25G00100 (gene) Nannochloropsis oceanica

Overview
NameNO25G00100
Unique NameNO25G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr25:12610..14146 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:12610..14146 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014347Tautomerase/MIF_sf
IPR015017DUF1904
Homology
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_073603799.1 (DUF1904 domain-containing protein [Vibrio aerogenes] >SHI17192.1 hypothetical protein VA7868_02106 [Vibrio aerogenes CECT 7868])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP  RF  V   LVQ ++  L       ++   + F +ES+ +TF +  G+P  + P +VE+LWF RGQ IQDQVAV + K +RD ++             DV +V I ++ H YY NG+H+
Sbjct:    1 MPHFRFRAVEPRLVQSLSKTLIDDFQQPMQSPREDFTFESIHTTFYTE-GEPASMYP-FVEVLWFDRGQMIQDQVAVTITKRIRDAMS---------DPELDVAVVFIPLQPHQYYDNGSHY 111          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: KXJ62204.1 (pseudouridine synthase [Alteromonas sp. Nap_26])

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-10
Identity = 41/122 (33.61%), Postives = 62/122 (50.82%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP +R  G+    VQ+VA  +   LA + +   D F  E + S F++  G     P  Y+E+LWF RGQD++  VAV + KA+R  + +            D+ +V   +   DYY+NG HF
Sbjct:    1 MPHIRARGLEIEAVQKVAGNIVEQLAKVTETPNDHFTLEYIASQFLTSGGASPAYP--YIEVLWFDRGQDMKSTVAVIIDKALRTVVDKN----------TDITVVFSDLNGADYYENGAHF 110          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_010293253.1 (DUF1904 domain-containing protein [Clostridium senegalense])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP L+  G+  + +  V+T+L   L  II    D F  E + ST+I   G+ +  P + +E+ WF RGQDIQD+VA A+ K  + E             +P + ++   +E+  YY+NG HF
Sbjct:    1 MPMLKIRGIDESKILEVSTELIDELEKIIGCPRDYFSMELINSTYIMD-GKKVQAPSI-IEVSWFDRGQDIQDKVAKAITKYFKTE------------AMPCLDIIFHNLEEKRYYENGEHF 108          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_061994687.1 (DUF1904 domain-containing protein [Clostridium sp. ATCC 25772])

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-9
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP L+  G+    +  V+T+L   L  IIK   D F  E V+ST+I   G+ +  P + +E+ WF RGQDIQD+VA ++ K  + E             +P + ++   + +  YY+NG HF
Sbjct:    1 MPMLKIRGIEEEKILEVSTELINELEKIIKCPRDYFSIELVKSTYIMD-GEKVKAPNI-IEVSWFDRGQDIQDKVAKSITKHFKTE------------AMPCLDIIFHNLNEERYYENGEHF 108          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: GAL23872.1 (hypothetical protein JCM19239_7826 [Vibrio variabilis])

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP LRF  +   +V+ +++ L   L  ++    + F  E + STF   A Q    P  +VE+LWF RGQ+++D+VA  +   VR  L +E           DV ++ + +E + YY NG H+
Sbjct:    1 MPHLRFRALEQEMVKTLSSPLVDELQPLMDCPREDFTIEHISSTFFFDAQQSHAYP--FVEVLWFDRGQEVKDKVASVITNQVRSVLGKE----------RDVAVIFVALEPNSYYDNGNHY 110          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_040330022.1 (DUF1904 domain-containing protein [Clostridium ihumii])

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP L+  GV    V  V+ +L   L +II+   D F  E   S +I      I++PP  +E+ WF RGQ++QD+VA+A+ K  +DE               DVI   ++ E+  YY+NG HF
Sbjct:    1 MPILKVTGVEEKKVLEVSEELINELENIIECPRDYFSIEFTNSKYIMDG--KIVMPPTIIEVSWFDRGQEVQDKVALAITKYFKDE----------NKECVDVIFNNLKEER--YYENGKHF 108          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_106728913.1 (DUF1904 domain-containing protein [Zobellella sp. 59N8] >PSJ46296.1 DUF1904 domain-containing protein [Zobellella sp. 59N8])

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP LRF GVS   V++++  L   LA +     + F  E + + F+ H G  +   P +VE+ WF R  ++QD+VA A+ +A+R        R G E   PDV +V  ++E  +YY+NG HF
Sbjct:    1 MPHLRFRGVSRETVKQLSKSLVDTLAPLAGSPREHFTLEFIPAEFV-HQGHVVAGYP-FVEVFWFERPLEVQDRVAAAITEALR-------ARVGDE---PDVAVVFTRLEGRNYYENGGHF 110          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_042476152.1 (DUF1904 domain-containing protein [Vibrio maritimus] >GAL21553.1 hypothetical protein JCM19235_1375 [Vibrio maritimus])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP LRF  +   +V+ +++ L   L  ++    + F  E + STF   A Q    P  ++E+LWF RGQ+++D+VA  +   VR  L +E           DV ++ + +E + YY NG H+
Sbjct:    1 MPHLRFRALEQEMVKTLSSPLVDELQPLMDCPREDFTIEHISSTFFFDAQQSHAYP--FIEVLWFDRGQEVKDKVASVITNQVRSVLGKE----------RDVAVIFVALEPNSYYDNGNHY 110          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_087034821.1 (DUF1904 domain-containing protein [Oceanisphaera profunda] >ART81733.1 hypothetical protein CBP31_03080 [Oceanisphaera profunda])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISH----AGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP LRF G+S A V+ ++  L   LA +I    + F  E + + F+      +GQP+I      E+LWF+R Q +QDQVA  + +A+R  L  +           D+ ++   +E H+YY+NG H+
Sbjct:    1 MPHLRFRGMSRATVKAISKTLVTTLAPVISSPENHFVVEFIPAEFVRDGQIMSGQPLI------EVLWFTRPQALQDQVATLITEAMRAYLEPD----------QDLCIIFTALEGHNYYENGQHY 110          
BLAST of NO25G00100 vs. NCBI_GenBank
Match: WP_106453005.1 (DUF1904 domain-containing protein [Zobellella taiwanensis] >PSJ44638.1 DUF1904 domain-containing protein [Zobellella taiwanensis])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP LRF GVS   V+ ++  L   LA +     D F  E + + F+   GQ +   P+ VE+LWF R  ++QD+VA A+ +A+R  L  E           D+ +V  ++E  +YY+NG HF
Sbjct:    1 MPHLRFRGVSRDTVKHISKTLVDTLAPMTDSPKDDFTLEFIPAEFV-QLGQVVAGFPL-VEVLWFERPLEVQDRVAAAITEALRARLGEEA----------DITVVFTRLEGRNYYENGRHF 110          
The following BLAST results are available for this feature:
BLAST of NO25G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_073603799.12.000e-1136.89DUF1904 domain-containing protein [Vibrio aerogene... [more]
KXJ62204.13.800e-1033.61pseudouridine synthase [Alteromonas sp. Nap_26][more]
WP_010293253.11.100e-933.61DUF1904 domain-containing protein [Clostridium sen... [more]
WP_061994687.11.400e-933.61DUF1904 domain-containing protein [Clostridium sp.... [more]
GAL23872.11.900e-931.97hypothetical protein JCM19239_7826 [Vibrio variabi... [more]
WP_040330022.11.900e-935.25DUF1904 domain-containing protein [Clostridium ihu... [more]
WP_106728913.11.900e-936.07DUF1904 domain-containing protein [Zobellella sp. ... [more]
WP_042476152.12.400e-931.15DUF1904 domain-containing protein [Vibrio maritimu... [more]
WP_087034821.12.400e-933.33DUF1904 domain-containing protein [Oceanisphaera p... [more]
WP_106453005.12.400e-935.25DUF1904 domain-containing protein [Zobellella taiw... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00100.1NO25G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00100.1NO25G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00100 ID=NO25G00100|Name=NO25G00100|organism=Nannochloropsis oceanica|type=gene|length=1537bp
CTTCTCTCCTACTCGTGGGCGAGGAGGGATGTGGGGAAGGGGCGCGGCAA
ATGACGAAGCACCCCAACGGTTATTTGAATTTGGGGGGCTGCATACGACG
CTCGATGGTTGTTCTGTGGAGCTTCCTAATTTATATTACGAGCCTTGTAC
GTGTGTCTGACTTATGTGGAGCCACCTTCTACCCTTCAATATGGCTACTT
GTATGTAGGATGTCTGTTTCCTCGCCTTGTACGTCCTATTTCTTTTCTTG
CTTCTCGTCATCATACATCATTCCCTCACCCCTCCAGCCATTGCATCGAC
ACAGGCAAATGCCTACTCTCCGCTTCCACGGCGTGTCGTCTGCTCTCGTT
CAACGAGTGGCCACTCAGTTGTCGCCTGTCCTCGCTTCCATTATCAAGgt
agttaaatggcgtgttgtgtgtcaatgtataaaagcgcgaacgacttgaa
tcttccggtctgccttaatagagcagtgctgccgtcgcactcggtggcac
gcctccgtgcacgtgtagatctgagtattgatccattcattagcttcctt
tcttcctttcttcctgtagGTGGAGCCAGATTTGTTTAGATACGAGAGCG
TGGAGAGCACCTTCATCAGTCATGCGGGGCAGCCGgtatggaatgtatga
tcgtgtggctgtcaggcaaaggcttgttgcagtgtcggggttgtggtgta
gtttcaccctcttttacacccttcagaaatgctcttctttcaagcgcagg
ggctttggagatggtctatgtccgccttctccctccctccctcccaccct
ccctggcactcttcctcatttcctcccttgtctccctcttccattgatca
gATCATCGTCCCCCCCGTCTACGTGGAACTTCTCTGGTTCTCCCGTGGCC
AAGACATCCAGgcatgttcctccctttctctctcccctctcctctaactc
cttctccctccctctctctccctctgtctctccctcatccatccctttcc
ctgtcttctgaatccacacccttgccttcctcccgtcaacgcgctcgctc
atccttccgctcaaactttgcgtctgttccatcgcgctggcccttgcctc
ctccctcccctcttcagGACCAGGTGGCGGTCGCCGTGCACAAGGCCGTG
CGGGACGAGCTGGCAAGGGAGGGAGGGAGGGAAGGAGGGGAGGGCACGCT
GCCGGACGTGATCTTGGTTGGAATCCAGATCGAAAAACACGACTACTATA
AAAATGGCACACATTTTTAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGTGGTGGGAACGGGAAGAAGGCCCGACGGGGAGTGATTTGTTTGAGGT
GACAGGCGTAAACGTCGTAGGTAAGGGTCAGGATAAGATGACACGAACAC
CTCCATCGTTACTCCAACGGTTTTCCTTCCCCCCGCCATCGTTAGTCTAA
CGGCTTTCCTCCCTCCGAGAATCATCGCAAGGGAAGTAAAACACGAAGGA
GAGACGGAGGGAGGGAAAGAACTTGGAACAAATAAGA
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protein sequence of NO25G00100.1

>NO25G00100.1-protein ID=NO25G00100.1-protein|Name=NO25G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MTKHPNGYLNLGGCIRRSMVVLWSFLIYITSLVRVSDLCGATFYPSIWLL
VCRMSVSSPCTSYFFSCFSSSYIIPSPLQPLHRHRQMPTLRFHGVSSALV
QRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLW
FSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHD
YYKNGTHF*
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Synonyms
Publications