NO25G00100.1, NO25G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00100.1
Unique NameNO25G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length944
Alignment locationchr25:12610..14146 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:12610..14146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00100.1 vs.
Match: WP_073603799.1 (DUF1904 domain-containing protein [Vibrio aerogenes]; SHI17192.1 hypothetical protein VA7868_02106 [Vibrio aerogenes CECT 7868])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 0 
Query:   87 MPTLRFHGVSSALVQRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLWFSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHDYYKNGTHF 209
            MP  RF  V   LVQ ++  L       ++   + F +ES+ +TF +  G+P  + P +VE+LWF RGQ IQDQVAV + K +RD ++             DV +V I ++ H YY NG+H+
Sbjct:    1 MPHFRFRAVEPRLVQSLSKTLIDDFQQPMQSPREDFTFESIHTTFYTE-GEPASMYP-FVEVLWFDRGQMIQDQVAVTITKRIRDAMS---------DPELDVAVVFIPLQPHQYYDNGSHY 111
The following BLAST results are available for this feature:
BLAST of NO25G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_073603799.12.000e-1136.89DUF1904 domain-containing protein [Vibrio aerogene... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00100NO25G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00100.1NO25G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00100.1.cds1NO25G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00100.1.cds2NO25G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00100.1.cds3NO25G00100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00100.1.cds4NO25G00100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00100.1 ID=NO25G00100.1|Name=NO25G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
CTTCTCTCCTACTCGTGGGCGAGGAGGGATGTGGGGAAGGGGCGCGGCAA
ATGACGAAGCACCCCAACGGTTATTTGAATTTGGGGGGCTGCATACGACG
CTCGATGGTTGTTCTGTGGAGCTTCCTAATTTATATTACGAGCCTTGTAC
GTGTGTCTGACTTATGTGGAGCCACCTTCTACCCTTCAATATGGCTACTT
GTATGTAGGATGTCTGTTTCCTCGCCTTGTACGTCCTATTTCTTTTCTTG
CTTCTCGTCATCATACATCATTCCCTCACCCCTCCAGCCATTGCATCGAC
ACAGGCAAATGCCTACTCTCCGCTTCCACGGCGTGTCGTCTGCTCTCGTT
CAACGAGTGGCCACTCAGTTGTCGCCTGTCCTCGCTTCCATTATCAAGGT
GGAGCCAGATTTGTTTAGATACGAGAGCGTGGAGAGCACCTTCATCAGTC
ATGCGGGGCAGCCGATCATCGTCCCCCCCGTCTACGTGGAACTTCTCTGG
TTCTCCCGTGGCCAAGACATCCAGGACCAGGTGGCGGTCGCCGTGCACAA
GGCCGTGCGGGACGAGCTGGCAAGGGAGGGAGGGAGGGAAGGAGGGGAGG
GCACGCTGCCGGACGTGATCTTGGTTGGAATCCAGATCGAAAAACACGAC
TACTATAAAAATGGCACACATTTTTAGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGTGGTGGGAACGGGAAGAAGGCCCGACGGGGAGTGATTTGT
TTGAGGTGACAGGCGTAAACGTCGTAGGTAAGGGTCAGGATAAGATGACA
CGAACACCTCCATCGTTACTCCAACGGTTTTCCTTCCCCCCGCCATCGTT
AGTCTAACGGCTTTCCTCCCTCCGAGAATCATCGCAAGGGAAGTAAAACA
CGAAGGAGAGACGGAGGGAGGGAAAGAACTTGGAACAAATAAGA
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protein sequence of NO25G00100.1

>NO25G00100.1-protein ID=NO25G00100.1-protein|Name=NO25G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MTKHPNGYLNLGGCIRRSMVVLWSFLIYITSLVRVSDLCGATFYPSIWLL
VCRMSVSSPCTSYFFSCFSSSYIIPSPLQPLHRHRQMPTLRFHGVSSALV
QRVATQLSPVLASIIKVEPDLFRYESVESTFISHAGQPIIVPPVYVELLW
FSRGQDIQDQVAVAVHKAVRDELAREGGREGGEGTLPDVILVGIQIEKHD
YYKNGTHF*
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mRNA from alignment at chr25:12610..14146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00100.1 ID=NO25G00100.1|Name=NO25G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at chr25:12610..14146+ (Nannochloropsis oceanica)
CTTCTCTCCTACTCGTGGGCGAGGAGGGATGTGGGGAAGGGGCGCGGCAA
ATGACGAAGCACCCCAACGGTTATTTGAATTTGGGGGGCTGCATACGACG
CTCGATGGTTGTTCTGTGGAGCTTCCTAATTTATATTACGAGCCTTGTAC
GTGTGTCTGACTTATGTGGAGCCACCTTCTACCCTTCAATATGGCTACTT
GTATGTAGGATGTCTGTTTCCTCGCCTTGTACGTCCTATTTCTTTTCTTG
CTTCTCGTCATCATACATCATTCCCTCACCCCTCCAGCCATTGCATCGAC
ACAGGCAAATGCCTACTCTCCGCTTCCACGGCGTGTCGTCTGCTCTCGTT
CAACGAGTGGCCACTCAGTTGTCGCCTGTCCTCGCTTCCATTATCAAGGT
AGTTAAATGGCGTGTTGTGTGTCAATGTATAAAAGCGCGAACGACTTGAA
TCTTCCGGTCTGCCTTAATAGAGCAGTGCTGCCGTCGCACTCGGTGGCAC
GCCTCCGTGCACGTGTAGATCTGAGTATTGATCCATTCATTAGCTTCCTT
TCTTCCTTTCTTCCTGTAGGTGGAGCCAGATTTGTTTAGATACGAGAGCG
TGGAGAGCACCTTCATCAGTCATGCGGGGCAGCCGGTATGGAATGTATGA
TCGTGTGGCTGTCAGGCAAAGGCTTGTTGCAGTGTCGGGGTTGTGGTGTA
GTTTCACCCTCTTTTACACCCTTCAGAAATGCTCTTCTTTCAAGCGCAGG
GGCTTTGGAGATGGTCTATGTCCGCCTTCTCCCTCCCTCCCTCCCACCCT
CCCTGGCACTCTTCCTCATTTCCTCCCTTGTCTCCCTCTTCCATTGATCA
GATCATCGTCCCCCCCGTCTACGTGGAACTTCTCTGGTTCTCCCGTGGCC
AAGACATCCAGGCATGTTCCTCCCTTTCTCTCTCCCCTCTCCTCTAACTC
CTTCTCCCTCCCTCTCTCTCCCTCTGTCTCTCCCTCATCCATCCCTTTCC
CTGTCTTCTGAATCCACACCCTTGCCTTCCTCCCGTCAACGCGCTCGCTC
ATCCTTCCGCTCAAACTTTGCGTCTGTTCCATCGCGCTGGCCCTTGCCTC
CTCCCTCCCCTCTTCAGGACCAGGTGGCGGTCGCCGTGCACAAGGCCGTG
CGGGACGAGCTGGCAAGGGAGGGAGGGAGGGAAGGAGGGGAGGGCACGCT
GCCGGACGTGATCTTGGTTGGAATCCAGATCGAAAAACACGACTACTATA
AAAATGGCACACATTTTTAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGTGGTGGGAACGGGAAGAAGGCCCGACGGGGAGTGATTTGTTTGAGGT
GACAGGCGTAAACGTCGTAGGTAAGGGTCAGGATAAGATGACACGAACAC
CTCCATCGTTACTCCAACGGTTTTCCTTCCCCCCGCCATCGTTAGTCTAA
CGGCTTTCCTCCCTCCGAGAATCATCGCAAGGGAAGTAAAACACGAAGGA
GAGACGGAGGGAGGGAAAGAACTTGGAACAAATAAGA
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Coding sequence (CDS) from alignment at chr25:12610..14146+

>NO25G00100.1 ID=NO25G00100.1|Name=NO25G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr25:12610..14146+ (Nannochloropsis oceanica)
ATGACGAAGCACCCCAACGGTTATTTGAATTTGGGGGGCTGCATACGACG
CTCGATGGTTGTTCTGTGGAGCTTCCTAATTTATATTACGAGCCTTGTAC
GTGTGTCTGACTTATGTGGAGCCACCTTCTACCCTTCAATATGGCTACTT
GTATGTAGGATGTCTGTTTCCTCGCCTTGTACGTCCTATTTCTTTTCTTG
CTTCTCGTCATCATACATCATTCCCTCACCCCTCCAGCCATTGCATCGAC
ACAGGCAAATGCCTACTCTCCGCTTCCACGGCGTGTCGTCTGCTCTCGTT
CAACGAGTGGCCACTCAGTTGTCGCCTGTCCTCGCTTCCATTATCAAGGT
GGAGCCAGATTTGTTTAGATACGAGAGCGTGGAGAGCACCTTCATCAGTC
ATGCGGGGCAGCCGATCATCGTCCCCCCCGTCTACGTGGAACTTCTCTGG
TTCTCCCGTGGCCAAGACATCCAGGACCAGGTGGCGGTCGCCGTGCACAA
GGCCGTGCGGGACGAGCTGGCAAGGGAGGGAGGGAGGGAAGGAGGGGAGG
GCACGCTGCCGGACGTGATCTTGGTTGGAATCCAGATCGAAAAACACGAC
TACTATAAAAATGGCACACATTTTTAG
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Synonyms
Publications