NO24G02490, NO24G02490 (gene) Nannochloropsis oceanica

Overview
NameNO24G02490
Unique NameNO24G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1309
Alignment locationchr24:682760..684068 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:682760..684068 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom
Homology
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BLAST of NO24G02490 vs. NCBI_GenBank
Match: XP_005855773.1 (hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526] >EKU20577.1 hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.6 bits (218), Expect = 2.500e-14
Identity = 69/169 (40.83%), Postives = 88/169 (52.07%), Query Frame = 0 
Query:    5 VLLLLLMAGAAFLATATISGCGFVGLCPQTSRVFTVSSRPTRSDSRT-LPSSATLTATTMTRLYHSFRVYNLDSLTVEQLKDALRRRGLKATGKKDDLLTRLRSDIAKGDQDGRPGWMLNLDLEXXXXXXXXXXXXXXXXXXXXXXXXXLVEKTLEDRLIAELAAEVRA 173
            VLLLL        AT    G  F+        V+   +RP      + +  + T    T   L  S RV++LD LTV+QLKDALRRRGL  +G+K DLL+RLR+DIA+G ++ RPGWMLNL+ E                           E+TLEDRL+A LAAEV A
Sbjct:    6 VLLLLXXXXXXXAATRLTRGSAFL-----HPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEG---------EETLEDRLVAALAAEVNA 160
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BLAST of NO24G02490 vs. NCBI_GenBank
Match: EWM24461.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 7.400e-14
Identity = 68/167 (40.72%), Postives = 87/167 (52.10%), Query Frame = 0 
Query:    5 VLLLLLMAGAAFLATATISGCGFVGLCPQTSRVFTVSSRPTRSDSRT-LPSSATLTATTMTRLYHSFRVYNLDSLTVEQLKDALRRRGLKATGKKDDLLTRLRSDIAKGDQDGRPGWMLNLDLEXXXXXXXXXXXXXXXXXXXXXXXXXLVEKTLEDRLIAELAAEV 171
            VLLLL        AT    G  F+        V+   +RP      + +  + T    T   L  S RV++LD LTV+QLKDALRRRGL  +G+K DLL+RLR+DIA+G ++ RPGWMLNL+ E                           E+TLEDRL+A LAAEV
Sbjct:    6 VLLLLXXXXXXXAATRLTRGSAFL-----HPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEG---------EETLEDRLVAALAAEV 158
The following BLAST results are available for this feature:
BLAST of NO24G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855773.12.500e-1440.83hypothetical protein NGA_0236620 [Nannochloropsis ... [more]
EWM24461.17.400e-1440.72DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02490.1NO24G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02490.1NO24G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02490 ID=NO24G02490|Name=NO24G02490|organism=Nannochloropsis oceanica|type=gene|length=1309bp
AACTACAGCCATGGTACGGCGCGTTCTCCTCCTGCTTCTGATGGCTGGGG
CCGCATTTCTGGCAACAGCAACAATTAGTGGTTGTGGCTTTGTGGGTCTG
TGTCCACAGACGAGTCGAGgtactgtctttctaccctccctccctctctc
gcgcctgccatgtggaagtccgcttgtatcccctataattcacgccatcc
ctcctccctttacatggtagTCTTTACAGTCTCATCGCGCCCGACCCGCT
CTGATTCTCGTACGCTGCCCTCGTCCGCAACGCTGACGGCCACCACCATG
ACAAGGCTATACCACTCCTTTCGTGTGTACAATTTGGACAGCCTCACGGT
GGAGCAACTCAAGGATgtgagtagaaaggaaggaaaagataatagggtct
caagggaatggatccatcaaaatgaaggacagagggccgagaactttact
cgagcacatttcggaaagggctggttgctgaccggcttccattttccccg
tccctccttcctgtcccttgtctagGCCCTCCGACGCCGTGGTTTGAAGG
CCACGGGCAAGAAAGACGACCTCCTCACTCGTCTGCGCAGTGACATgtac
gttgtcaggaaggataggggcagaagggaagaagagggcgagagtgaggg
ttggccacctcagtcggtattgccccctcccaaaatgtattatatatata
atatacatttagtttacccctgcttattgctgcgtctcctttcctccctc
accctctttttctttccctccttctatcccgtcccgtttttgaaataact
tccagCGCCAAGGGCGACCAAGACGGCCGACCTGGGTGGATGCTTAATCT
GGACCTCGAGGAGGAGAAGAAGGAAGAGGAGGAGGGAAGGAGGGAGAGAG
GGGAAGAGGAGGAGGAGGAGATGGAGAAGGATAACCTAGTTGAAAAAACG
TTGGAGGACCGGCTGATTGCTGAGCTGGCGGCGGAAGTGgtaaggaggga
gggagggagggatagaagggagagagcgactttgcacagatagcggggtg
tgatgacggcagggagccgtcgataaaaggggaaggacatgaaagggact
agggcacgtcttccaatccatccttaatctgttccctcccctcctgctcc
ccctcctttaaccaaccacagCGCGCCACTACCGTCATCCCTCCCCCATC
CCCCAACGCAAGCCGCGCAGCACCAGCAGCAGCAGCACCCGCAGCACCAG
CGCCAGCAGCAGCAGCAGTTCCCAAAAGAAGGAACCTTCCCTAACCCACC
AGCCCCCTC
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protein sequence of NO24G02490.1

>NO24G02490.1-protein ID=NO24G02490.1-protein|Name=NO24G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MVRRVLLLLLMAGAAFLATATISGCGFVGLCPQTSRVFTVSSRPTRSDSR
TLPSSATLTATTMTRLYHSFRVYNLDSLTVEQLKDALRRRGLKATGKKDD
LLTRLRSDIAKGDQDGRPGWMLNLDLEEEKKEEEEGRRERGEEEEEEMEK
DNLVEKTLEDRLIAELAAEVRATTVIPPPSPNASRAAPAAAAPAAPAPAA
AAVPKRRNLP*
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Synonyms
Publications