NO24G02490.1, NO24G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02490.1
Unique NameNO24G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length658
Alignment locationchr24:682760..684068 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:682760..684068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02490.1 vs.
Match: XP_005855773.1 (hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526]; EKU20577.1 hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.4 bits (233), Expect = 4.600e-16
Identity = 79/169 (46.75%), Postives = 100/169 (59.17%), Query Frame = 0 
Query:    5 VLLLLLMAGAAFLATATISGCGFVGLCPQTSRVFTVSSRPTRSDSRT-LPSSATLTATTMTRLYHSFRVYNLDSLTVEQLKDALRRRGLKATGKKDDLLTRLRSDIAKGDQDGRPGWMLNLDLEEEKKEEEEGRRERGEEEEEEMEKDNLVEKTLEDRLIAELAAEVRA 173
            VLLLL+ A AA  AT    G  F+        V+   +RP      + +  + T    T   L  S RV++LD LTV+QLKDALRRRGL  +G+K DLL+RLR+DIA+G ++ RPGWMLNL+ EEE     +G   + EEE EE         TLEDRL+A LAAEV A
Sbjct:    6 VLLLLVAALAASAATRLTRGSAFLH-----PAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEE---------TLEDRLVAALAAEVNA 160
The following BLAST results are available for this feature:
BLAST of NO24G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855773.14.600e-1646.75hypothetical protein NGA_0236620 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02490NO24G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02490.1NO24G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02490.1.cds1NO24G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02490.1.cds2NO24G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02490.1.cds3NO24G02490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02490.1.cds4NO24G02490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02490.1.cds5NO24G02490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02490.1 ID=NO24G02490.1|Name=NO24G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=658bp
AACTACAGCCATGGTACGGCGCGTTCTCCTCCTGCTTCTGATGGCTGGGG
CCGCATTTCTGGCAACAGCAACAATTAGTGGTTGTGGCTTTGTGGGTCTG
TGTCCACAGACGAGTCGAGTCTTTACAGTCTCATCGCGCCCGACCCGCTC
TGATTCTCGTACGCTGCCCTCGTCCGCAACGCTGACGGCCACCACCATGA
CAAGGCTATACCACTCCTTTCGTGTGTACAATTTGGACAGCCTCACGGTG
GAGCAACTCAAGGATGCCCTCCGACGCCGTGGTTTGAAGGCCACGGGCAA
GAAAGACGACCTCCTCACTCGTCTGCGCAGTGACATCGCCAAGGGCGACC
AAGACGGCCGACCTGGGTGGATGCTTAATCTGGACCTCGAGGAGGAGAAG
AAGGAAGAGGAGGAGGGAAGGAGGGAGAGAGGGGAAGAGGAGGAGGAGGA
GATGGAGAAGGATAACCTAGTTGAAAAAACGTTGGAGGACCGGCTGATTG
CTGAGCTGGCGGCGGAAGTGCGCGCCACTACCGTCATCCCTCCCCCATCC
CCCAACGCAAGCCGCGCAGCACCAGCAGCAGCAGCACCCGCAGCACCAGC
GCCAGCAGCAGCAGCAGTTCCCAAAAGAAGGAACCTTCCCTAACCCACCA
GCCCCCTC
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protein sequence of NO24G02490.1

>NO24G02490.1-protein ID=NO24G02490.1-protein|Name=NO24G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MVRRVLLLLLMAGAAFLATATISGCGFVGLCPQTSRVFTVSSRPTRSDSR
TLPSSATLTATTMTRLYHSFRVYNLDSLTVEQLKDALRRRGLKATGKKDD
LLTRLRSDIAKGDQDGRPGWMLNLDLEEEKKEEEEGRRERGEEEEEEMEK
DNLVEKTLEDRLIAELAAEVRATTVIPPPSPNASRAAPAAAAPAAPAPAA
AAVPKRRNLP*
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mRNA from alignment at chr24:682760..684068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02490.1 ID=NO24G02490.1|Name=NO24G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at chr24:682760..684068- (Nannochloropsis oceanica)
AACTACAGCCATGGTACGGCGCGTTCTCCTCCTGCTTCTGATGGCTGGGG
CCGCATTTCTGGCAACAGCAACAATTAGTGGTTGTGGCTTTGTGGGTCTG
TGTCCACAGACGAGTCGAGGTACTGTCTTTCTACCCTCCCTCCCTCTCTC
GCGCCTGCCATGTGGAAGTCCGCTTGTATCCCCTATAATTCACGCCATCC
CTCCTCCCTTTACATGGTAGTCTTTACAGTCTCATCGCGCCCGACCCGCT
CTGATTCTCGTACGCTGCCCTCGTCCGCAACGCTGACGGCCACCACCATG
ACAAGGCTATACCACTCCTTTCGTGTGTACAATTTGGACAGCCTCACGGT
GGAGCAACTCAAGGATGTGAGTAGAAAGGAAGGAAAAGATAATAGGGTCT
CAAGGGAATGGATCCATCAAAATGAAGGACAGAGGGCCGAGAACTTTACT
CGAGCACATTTCGGAAAGGGCTGGTTGCTGACCGGCTTCCATTTTCCCCG
TCCCTCCTTCCTGTCCCTTGTCTAGGCCCTCCGACGCCGTGGTTTGAAGG
CCACGGGCAAGAAAGACGACCTCCTCACTCGTCTGCGCAGTGACATGTAC
GTTGTCAGGAAGGATAGGGGCAGAAGGGAAGAAGAGGGCGAGAGTGAGGG
TTGGCCACCTCAGTCGGTATTGCCCCCTCCCAAAATGTATTATATATATA
ATATACATTTAGTTTACCCCTGCTTATTGCTGCGTCTCCTTTCCTCCCTC
ACCCTCTTTTTCTTTCCCTCCTTCTATCCCGTCCCGTTTTTGAAATAACT
TCCAGCGCCAAGGGCGACCAAGACGGCCGACCTGGGTGGATGCTTAATCT
GGACCTCGAGGAGGAGAAGAAGGAAGAGGAGGAGGGAAGGAGGGAGAGAG
GGGAAGAGGAGGAGGAGGAGATGGAGAAGGATAACCTAGTTGAAAAAACG
TTGGAGGACCGGCTGATTGCTGAGCTGGCGGCGGAAGTGGTAAGGAGGGA
GGGAGGGAGGGATAGAAGGGAGAGAGCGACTTTGCACAGATAGCGGGGTG
TGATGACGGCAGGGAGCCGTCGATAAAAGGGGAAGGACATGAAAGGGACT
AGGGCACGTCTTCCAATCCATCCTTAATCTGTTCCCTCCCCTCCTGCTCC
CCCTCCTTTAACCAACCACAGCGCGCCACTACCGTCATCCCTCCCCCATC
CCCCAACGCAAGCCGCGCAGCACCAGCAGCAGCAGCACCCGCAGCACCAG
CGCCAGCAGCAGCAGCAGTTCCCAAAAGAAGGAACCTTCCCTAACCCACC
AGCCCCCTC
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Coding sequence (CDS) from alignment at chr24:682760..684068-

>NO24G02490.1 ID=NO24G02490.1|Name=NO24G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr24:682760..684068- (Nannochloropsis oceanica)
ATGGTACGGCGCGTTCTCCTCCTGCTTCTGATGGCTGGGGCCGCATTTCT
GGCAACAGCAACAATTAGTGGTTGTGGCTTTGTGGGTCTGTGTCCACAGA
CGAGTCGAGTCTTTACAGTCTCATCGCGCCCGACCCGCTCTGATTCTCGT
ACGCTGCCCTCGTCCGCAACGCTGACGGCCACCACCATGACAAGGCTATA
CCACTCCTTTCGTGTGTACAATTTGGACAGCCTCACGGTGGAGCAACTCA
AGGATGCCCTCCGACGCCGTGGTTTGAAGGCCACGGGCAAGAAAGACGAC
CTCCTCACTCGTCTGCGCAGTGACATCGCCAAGGGCGACCAAGACGGCCG
ACCTGGGTGGATGCTTAATCTGGACCTCGAGGAGGAGAAGAAGGAAGAGG
AGGAGGGAAGGAGGGAGAGAGGGGAAGAGGAGGAGGAGGAGATGGAGAAG
GATAACCTAGTTGAAAAAACGTTGGAGGACCGGCTGATTGCTGAGCTGGC
GGCGGAAGTGCGCGCCACTACCGTCATCCCTCCCCCATCCCCCAACGCAA
GCCGCGCAGCACCAGCAGCAGCAGCACCCGCAGCACCAGCGCCAGCAGCA
GCAGCAGTTCCCAAAAGAAGGAACCTTCCCTAA
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Synonyms
Publications