NO24G02450, NO24G02450 (gene) Nannochloropsis oceanica

Overview
NameNO24G02450
Unique NameNO24G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr24:673946..674629 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:673946..674629 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO24G02450 vs. NCBI_GenBank
Match: EWM24457.1 (hypothetical protein Naga_100512g1 [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 1.600e-28
Identity = 59/83 (71.08%), Postives = 74/83 (89.16%), Query Frame = 0 
Query:    1 MPNTLSFVPVAVPILGWLLAMLLIFVVHFLASWRRRSHLVGHLPKVFLWIDPRSFLASLLRQKWNAESFDRLVLEEFEKRDYP 84
            M +  S++PVAVPI GWLLAM++IFVVHF++SWRRR HLVG+LPK+FLWIDPRSFLA+  RQKWN  +FDRL+LEEF++R+YP
Sbjct:    1 MRSKYSYLPVAVPIAGWLLAMMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLATAFRQKWNRRTFDRLILEEFQRRNYP 83
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BLAST of NO24G02450 vs. NCBI_GenBank
Match: XP_005855781.1 (hypothetical protein NGA_0626300, partial [Nannochloropsis gaditana CCMP526] >EKU20585.1 hypothetical protein NGA_0626300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-9
Identity = 30/38 (78.95%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:   21 MLLIFVVHFLASWRRRSHLVGHLPKVFLWIDPRSFLAS 59
            M++IFVVHF++SWRRR HLVG+LPK+FLWIDPRSFLA+
Sbjct:    1 MMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLAT 38
The following BLAST results are available for this feature:
BLAST of NO24G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24457.11.600e-2871.08hypothetical protein Naga_100512g1 [Nannochloropsi... [more]
XP_005855781.11.000e-978.95hypothetical protein NGA_0626300, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009098NSK009098Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02450.1NO24G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|351308gene_10392Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100512g1gene6018Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02450.1NO24G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02450 ID=NO24G02450|Name=NO24G02450|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCCCATCCTGGGCTG
GCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTCTTGCTTCCTGGC
GACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGgtatgtattaatcga
gagcaagggctgtaacaagagagcatcgggagatctcttgggaaacgcaa
tttgtaagaagggaagcctcgagggagcacggggacagggcgtctacgac
aggcgttgattaaggcccaatcgggcttttgatacatgataaatgtttcc
ctccctcctgtcctttcctcccaacttccctgcgaccagGTTTTCTTATG
GATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAAGTGGAACG
CTGAGAGTTTCGACCGgtatgggggacgagaggagggagggaggaaggga
ggaaggggggcatggcttggaacatggggcgcagcagttcgcctcaaagc
gagcgacaagttgctaagtgaaggcaaagtatatttgtccagatctcttt
tagtttggttttctccaatcattattctgcgctgcgagacattcgtcttc
tccatccctccctcccccctgcctccctccctccacagCTTGGTGCTGGA
AGAGTTCGAGAAGCGAGACTACCCCCAGTCATAG
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protein sequence of NO24G02450.1

>NO24G02450.1-protein ID=NO24G02450.1-protein|Name=NO24G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MPNTLSFVPVAVPILGWLLAMLLIFVVHFLASWRRRSHLVGHLPKVFLWI
DPRSFLASLLRQKWNAESFDRLVLEEFEKRDYPQS*
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Synonyms
Publications