NO24G02450.1, NO24G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02450.1
Unique NameNO24G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length258
Alignment locationchr24:673946..674629 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:673946..674629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02450.1 vs.
Match: EWM24457.1 (hypothetical protein Naga_100512g1 [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 1.600e-28
Identity = 59/83 (71.08%), Postives = 74/83 (89.16%), Query Frame = 0 
Query:    1 MPNTLSFVPVAVPILGWLLAMLLIFVVHFLASWRRRSHLVGHLPKVFLWIDPRSFLASLLRQKWNAESFDRLVLEEFEKRDYP 84
            M +  S++PVAVPI GWLLAM++IFVVHF++SWRRR HLVG+LPK+FLWIDPRSFLA+  RQKWN  +FDRL+LEEF++R+YP
Sbjct:    1 MRSKYSYLPVAVPIAGWLLAMMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLATAFRQKWNRRTFDRLILEEFQRRNYP 83
The following BLAST results are available for this feature:
BLAST of NO24G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24457.11.600e-2871.08hypothetical protein Naga_100512g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02450NO24G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02450.1NO24G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02450.1.cds1NO24G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02450.1.cds2NO24G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02450.1.cds3NO24G02450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02450.1 ID=NO24G02450.1|Name=NO24G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=258bp
ATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCCCATCCTGGGCTG
GCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTCTTGCTTCCTGGC
GACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTTTTCTTATGGATT
GATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAAGTGGAACGCTGA
GAGTTTCGACCGCTTGGTGCTGGAAGAGTTCGAGAAGCGAGACTACCCCC
AGTCATAG
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protein sequence of NO24G02450.1

>NO24G02450.1-protein ID=NO24G02450.1-protein|Name=NO24G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MPNTLSFVPVAVPILGWLLAMLLIFVVHFLASWRRRSHLVGHLPKVFLWI
DPRSFLASLLRQKWNAESFDRLVLEEFEKRDYPQS*
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mRNA from alignment at chr24:673946..674629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02450.1 ID=NO24G02450.1|Name=NO24G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at chr24:673946..674629+ (Nannochloropsis oceanica)
ATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCCCATCCTGGGCTG
GCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTCTTGCTTCCTGGC
GACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTATGTATTAATCGA
GAGCAAGGGCTGTAACAAGAGAGCATCGGGAGATCTCTTGGGAAACGCAA
TTTGTAAGAAGGGAAGCCTCGAGGGAGCACGGGGACAGGGCGTCTACGAC
AGGCGTTGATTAAGGCCCAATCGGGCTTTTGATACATGATAAATGTTTCC
CTCCCTCCTGTCCTTTCCTCCCAACTTCCCTGCGACCAGGTTTTCTTATG
GATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAAGTGGAACG
CTGAGAGTTTCGACCGGTATGGGGGACGAGAGGAGGGAGGGAGGAAGGGA
GGAAGGGGGGCATGGCTTGGAACATGGGGCGCAGCAGTTCGCCTCAAAGC
GAGCGACAAGTTGCTAAGTGAAGGCAAAGTATATTTGTCCAGATCTCTTT
TAGTTTGGTTTTCTCCAATCATTATTCTGCGCTGCGAGACATTCGTCTTC
TCCATCCCTCCCTCCCCCCTGCCTCCCTCCCTCCACAGCTTGGTGCTGGA
AGAGTTCGAGAAGCGAGACTACCCCCAGTCATAG
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Coding sequence (CDS) from alignment at chr24:673946..674629+

>NO24G02450.1 ID=NO24G02450.1|Name=NO24G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at chr24:673946..674629+ (Nannochloropsis oceanica)
ATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCCCATCCTGGGCTG
GCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTCTTGCTTCCTGGC
GACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTTTTCTTATGGATT
GATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAAGTGGAACGCTGA
GAGTTTCGACCGCTTGGTGCTGGAAGAGTTCGAGAAGCGAGACTACCCCC
AGTCATAG
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Synonyms
Publications