NO24G02430, NO24G02430 (gene) Nannochloropsis oceanica

Overview
NameNO24G02430
Unique NameNO24G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1750
Alignment locationchr24:666447..668196 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:666447..668196 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02430 vs. NCBI_GenBank
Match: EWM24458.1 (hypothetical protein Naga_100512g3 [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 8.300e-63
Identity = 130/200 (65.00%), Postives = 151/200 (75.50%), Query Frame = 0 
Query:    8 MKRRRASTTSSFHLPILPATLFASLLFLLFPKPTHAGYFRGAPPPEPGQCTYVEGIYIEDAVNALAKCVETSPDGIKYSLNKEDDLGHGDVLGGLELKNLNKCLEKVKEDKGEKEMDEECVKYVKKFQETGNNSDGKEPAGKVAKKLMYDYDNFCYCMATIDPSEIFCYGMGVAPTIKYIRETCDLAYYKYVRKVLYEKP 208
            MKRRRAST     L  LP  LF SLL L  P   HAG+FR  PPP PG+CTYVE IYIEDAVNALAKCVE SPDGI+ +L K+ D     +LG L LKNLN+CLEKVK+D G   +D++C KYV+ FQ TG++S+GKE  G VAKK+MY+ D FCYCMATIDPSEIFCYG+GVAP IK IR+TCDL  YKYV+KVL + P
Sbjct:    1 MKRRRAST----FLLALPRALFLSLLSL--PYSAHAGFFRHDPPPAPGECTYVENIYIEDAVNALAKCVEVSPDGIRNALQKQTDKDGEYILGELYLKNLNECLEKVKKDGGSYNLDDKCNKYVEDFQATGDSSNGKEAGGIVAKKMMYNTDKFCYCMATIDPSEIFCYGLGVAPAIKSIRDTCDLLDYKYVQKVLTKPP 194
The following BLAST results are available for this feature:
BLAST of NO24G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24458.18.300e-6365.00hypothetical protein Naga_100512g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009102NSK009102Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02430.1NO24G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100512g3gene6020Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02430.1NO24G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02430 ID=NO24G02430|Name=NO24G02430|organism=Nannochloropsis oceanica|type=gene|length=1750bp
ATGCCCAACCCACAGGGAAGGATGAAGCGCCGTCGGGCTTCGACCACCTC
TTCGTTCCACCTCCCCATCCTCCCTGCCACCCTCTTCGCCTCCCTCCTCT
TTCTCCTCTTCCCCAAACCCACTCACGCCGGCTACTTCCGTGGGGCGCCA
CCACCGGAGCCGGGTCAGTGCACGTATGTCGAAGGTATATACATCGAGGA
TGCTGTGAATGCCCTGGCCAAGTGCGTGGAGACCAGCCCTGATGGGATCA
AGTACTCCTTGAATAAGGAGGACGACTTAGGGCACGGCGATGTGTTAGGG
GGCTTAGAACTCAAGAATCTGAACAAGTGCCTGGAGAAGGTCAAGGAAGA
CAAGGGCGAGAAGGAGATGGACGAGGAGTGTGTAAAATACGTGAAGAAGT
TCCAGGAGACGGGCAATAATAGCGATGGAAAGGAGCCGGCGGGTAAGGTG
GCTAAGAAGCTTATGTACGATTATGACAACTTCTGCTACTGCATGGCCAC
GATTGACCCCTCGGAGATCTTTTGCTATGGCATGGGTGTGgtatgtgttc
agggagggagggagggagggagggagggaggaagggatagtttctacgtg
actagaagatgactcgattttgagacatgctgcaaatgactccaattaga
tctctcttttgtcatggtatgggtgtgatacataggggaagggagggata
gagagggagggagggagggagggagagaggggtacatgcacgggtattag
tgagtctactttgcttggcagagaacaaaggagaaaggaggcaggcctat
cttccttctttccataacctcacatatgtatatatacgcgtcaacttcta
ctctgcggtagtattctttccggtctccttcctttcccttctttccacgc
attcttattcctttccctcccttctcccctccctccacagGCCCCCACCA
TCAAGTACATCCGCGAAACCTGTGACCTCGCCTATTACAAGTACGTCCGC
AAAGTCCTCTACGAGAAGCCCTATGAGAAACCCTCCTATCCGTCCCCCGA
CCCTCACCCCCCTTCTCATCCCGAGCCGGCTCCTTCTCCCGACTATCCCT
CCCACGACCCGCACCACGATGCATCAGACCCCCCATCCCCCTACCCCCCC
TCACCCTTTCCTTCGGATCACGACAACGATCATTGGGGTCACGACAACGA
TCATTGGGATCATGGCAACGATCACTCCGACCACGACTCCCATCATTCAG
ATCACGACAACGATCACTCGGATCACGACAACGATCACTCCGACCACGAC
TCCCATCATTCAGATCACGACAATGATCCCTCGCACCACGATAATGATCA
TTCGCATCACGATAATGATCCCTCGCACAACGATAATGATCATTCGGACC
ACGACAACGGTCATTCGGACCACACACCGGATTCTCCCTCCCCCTACCCA
TCTCCTCCGACGCCCGAACCCCCCTCCCCCTCTCCTTCCCCCTCACCCTC
TCCCTCCCTCTACCCCTCCGCCTGGGTGCCAATCGCACCCACCACGCCCA
ACGCTCCAAGGGAGCCTGTGAACCCGGCCCCTCCGGCCGCGACTCCTACC
ACGACTCCCACCTACCCCGCCGTCCCTCCAACGCCTGCCATAATTCCTCC
GACACCTCCCGCAATCCCTCCGCCTACGCCTGCCACAACTCCTCCGACCC
CTCCCGTGACCCCTCCAACGCCTGCCACAACTCCTCCGACCCCCCCGTAA
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protein sequence of NO24G02430.1

>NO24G02430.1-protein ID=NO24G02430.1-protein|Name=NO24G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MPNPQGRMKRRRASTTSSFHLPILPATLFASLLFLLFPKPTHAGYFRGAP
PPEPGQCTYVEGIYIEDAVNALAKCVETSPDGIKYSLNKEDDLGHGDVLG
GLELKNLNKCLEKVKEDKGEKEMDEECVKYVKKFQETGNNSDGKEPAGKV
AKKLMYDYDNFCYCMATIDPSEIFCYGMGVAPTIKYIRETCDLAYYKYVR
KVLYEKPYEKPSYPSPDPHPPSHPEPAPSPDYPSHDPHHDASDPPSPYPP
SPFPSDHDNDHWGHDNDHWDHGNDHSDHDSHHSDHDNDHSDHDNDHSDHD
SHHSDHDNDPSHHDNDHSHHDNDPSHNDNDHSDHDNGHSDHTPDSPSPYP
SPPTPEPPSPSPSPSPSPSLYPSAWVPIAPTTPNAPREPVNPAPPAATPT
TTPTYPAVPPTPAIIPPTPPAIPPPTPATTPPTPPVTPPTPATTPPTPP*
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Synonyms
Publications