NO24G02430.1, NO24G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02430.1
Unique NameNO24G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1350
Alignment locationchr24:666447..668196 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:666447..668196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02430.1 vs.
Match: EWM24458.1 (hypothetical protein Naga_100512g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 2.800e-63
Identity = 143/230 (62.17%), Postives = 164/230 (71.30%), Query Frame = 0 
Query:    8 MKRRRASTTSSFHLPILPATLFASLLFLLFPKPTHAGYFRGAPPPEPGQCTYVEGIYIEDAVNALAKCVETSPDGIKYSLNKEDDLGHGDVLGGLELKNLNKCLEKVKEDKGEKEMDEECVKYVKKFQETGNNSDGKEPAGKVAKKLMYDYDNFCYCMATIDPSEIFCYGMGVAPTIKYIRETCDLAYYKYVRKVLYEKPYEKPSYPSPDPHPPSHPEPAPSPDYPSHDP 238
            MKRRRAST     L  LP  LF SLL L  P   HAG+FR  PPP PG+CTYVE IYIEDAVNALAKCVE SPDGI+ +L K+ D     +LG L LKNLN+CLEKVK+D G   +D++C KYV+ FQ TG++S+GKE  G VAKK+MY+ D FCYCMATIDPSEIFCYG+GVAP IK IR+TCDL  YKYV+KVL + P  KP  P P P PP  P P  S    SH P
Sbjct:    1 MKRRRAST----FLLALPRALFLSLLSL--PYSAHAGFFRHDPPPAPGECTYVENIYIEDAVNALAKCVEVSPDGIRNALQKQTDKDGEYILGELYLKNLNECLEKVKKDGGSYNLDDKCNKYVEDFQATGDSSNGKEAGGIVAKKMMYNTDKFCYCMATIDPSEIFCYGLGVAPAIKSIRDTCDLLDYKYVQKVLTKPP--KPVPPPPPPPPPPRPGPNSS---TSHRP 219
The following BLAST results are available for this feature:
BLAST of NO24G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24458.12.800e-6362.17hypothetical protein Naga_100512g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02430NO24G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02430.1NO24G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02430.1.cds1NO24G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02430.1.cds2NO24G02430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02430.1 ID=NO24G02430.1|Name=NO24G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ATGCCCAACCCACAGGGAAGGATGAAGCGCCGTCGGGCTTCGACCACCTC
TTCGTTCCACCTCCCCATCCTCCCTGCCACCCTCTTCGCCTCCCTCCTCT
TTCTCCTCTTCCCCAAACCCACTCACGCCGGCTACTTCCGTGGGGCGCCA
CCACCGGAGCCGGGTCAGTGCACGTATGTCGAAGGTATATACATCGAGGA
TGCTGTGAATGCCCTGGCCAAGTGCGTGGAGACCAGCCCTGATGGGATCA
AGTACTCCTTGAATAAGGAGGACGACTTAGGGCACGGCGATGTGTTAGGG
GGCTTAGAACTCAAGAATCTGAACAAGTGCCTGGAGAAGGTCAAGGAAGA
CAAGGGCGAGAAGGAGATGGACGAGGAGTGTGTAAAATACGTGAAGAAGT
TCCAGGAGACGGGCAATAATAGCGATGGAAAGGAGCCGGCGGGTAAGGTG
GCTAAGAAGCTTATGTACGATTATGACAACTTCTGCTACTGCATGGCCAC
GATTGACCCCTCGGAGATCTTTTGCTATGGCATGGGTGTGGCCCCCACCA
TCAAGTACATCCGCGAAACCTGTGACCTCGCCTATTACAAGTACGTCCGC
AAAGTCCTCTACGAGAAGCCCTATGAGAAACCCTCCTATCCGTCCCCCGA
CCCTCACCCCCCTTCTCATCCCGAGCCGGCTCCTTCTCCCGACTATCCCT
CCCACGACCCGCACCACGATGCATCAGACCCCCCATCCCCCTACCCCCCC
TCACCCTTTCCTTCGGATCACGACAACGATCATTGGGGTCACGACAACGA
TCATTGGGATCATGGCAACGATCACTCCGACCACGACTCCCATCATTCAG
ATCACGACAACGATCACTCGGATCACGACAACGATCACTCCGACCACGAC
TCCCATCATTCAGATCACGACAATGATCCCTCGCACCACGATAATGATCA
TTCGCATCACGATAATGATCCCTCGCACAACGATAATGATCATTCGGACC
ACGACAACGGTCATTCGGACCACACACCGGATTCTCCCTCCCCCTACCCA
TCTCCTCCGACGCCCGAACCCCCCTCCCCCTCTCCTTCCCCCTCACCCTC
TCCCTCCCTCTACCCCTCCGCCTGGGTGCCAATCGCACCCACCACGCCCA
ACGCTCCAAGGGAGCCTGTGAACCCGGCCCCTCCGGCCGCGACTCCTACC
ACGACTCCCACCTACCCCGCCGTCCCTCCAACGCCTGCCATAATTCCTCC
GACACCTCCCGCAATCCCTCCGCCTACGCCTGCCACAACTCCTCCGACCC
CTCCCGTGACCCCTCCAACGCCTGCCACAACTCCTCCGACCCCCCCGTAA
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protein sequence of NO24G02430.1

>NO24G02430.1-protein ID=NO24G02430.1-protein|Name=NO24G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MPNPQGRMKRRRASTTSSFHLPILPATLFASLLFLLFPKPTHAGYFRGAP
PPEPGQCTYVEGIYIEDAVNALAKCVETSPDGIKYSLNKEDDLGHGDVLG
GLELKNLNKCLEKVKEDKGEKEMDEECVKYVKKFQETGNNSDGKEPAGKV
AKKLMYDYDNFCYCMATIDPSEIFCYGMGVAPTIKYIRETCDLAYYKYVR
KVLYEKPYEKPSYPSPDPHPPSHPEPAPSPDYPSHDPHHDASDPPSPYPP
SPFPSDHDNDHWGHDNDHWDHGNDHSDHDSHHSDHDNDHSDHDNDHSDHD
SHHSDHDNDPSHHDNDHSHHDNDPSHNDNDHSDHDNGHSDHTPDSPSPYP
SPPTPEPPSPSPSPSPSPSLYPSAWVPIAPTTPNAPREPVNPAPPAATPT
TTPTYPAVPPTPAIIPPTPPAIPPPTPATTPPTPPVTPPTPATTPPTPP*
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mRNA from alignment at chr24:666447..668196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02430.1 ID=NO24G02430.1|Name=NO24G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp|location=Sequence derived from alignment at chr24:666447..668196- (Nannochloropsis oceanica)
ATGCCCAACCCACAGGGAAGGATGAAGCGCCGTCGGGCTTCGACCACCTC
TTCGTTCCACCTCCCCATCCTCCCTGCCACCCTCTTCGCCTCCCTCCTCT
TTCTCCTCTTCCCCAAACCCACTCACGCCGGCTACTTCCGTGGGGCGCCA
CCACCGGAGCCGGGTCAGTGCACGTATGTCGAAGGTATATACATCGAGGA
TGCTGTGAATGCCCTGGCCAAGTGCGTGGAGACCAGCCCTGATGGGATCA
AGTACTCCTTGAATAAGGAGGACGACTTAGGGCACGGCGATGTGTTAGGG
GGCTTAGAACTCAAGAATCTGAACAAGTGCCTGGAGAAGGTCAAGGAAGA
CAAGGGCGAGAAGGAGATGGACGAGGAGTGTGTAAAATACGTGAAGAAGT
TCCAGGAGACGGGCAATAATAGCGATGGAAAGGAGCCGGCGGGTAAGGTG
GCTAAGAAGCTTATGTACGATTATGACAACTTCTGCTACTGCATGGCCAC
GATTGACCCCTCGGAGATCTTTTGCTATGGCATGGGTGTGGTATGTGTTC
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGATAGTTTCTACGTG
ACTAGAAGATGACTCGATTTTGAGACATGCTGCAAATGACTCCAATTAGA
TCTCTCTTTTGTCATGGTATGGGTGTGATACATAGGGGAAGGGAGGGATA
GAGAGGGAGGGAGGGAGGGAGGGAGAGAGGGGTACATGCACGGGTATTAG
TGAGTCTACTTTGCTTGGCAGAGAACAAAGGAGAAAGGAGGCAGGCCTAT
CTTCCTTCTTTCCATAACCTCACATATGTATATATACGCGTCAACTTCTA
CTCTGCGGTAGTATTCTTTCCGGTCTCCTTCCTTTCCCTTCTTTCCACGC
ATTCTTATTCCTTTCCCTCCCTTCTCCCCTCCCTCCACAGGCCCCCACCA
TCAAGTACATCCGCGAAACCTGTGACCTCGCCTATTACAAGTACGTCCGC
AAAGTCCTCTACGAGAAGCCCTATGAGAAACCCTCCTATCCGTCCCCCGA
CCCTCACCCCCCTTCTCATCCCGAGCCGGCTCCTTCTCCCGACTATCCCT
CCCACGACCCGCACCACGATGCATCAGACCCCCCATCCCCCTACCCCCCC
TCACCCTTTCCTTCGGATCACGACAACGATCATTGGGGTCACGACAACGA
TCATTGGGATCATGGCAACGATCACTCCGACCACGACTCCCATCATTCAG
ATCACGACAACGATCACTCGGATCACGACAACGATCACTCCGACCACGAC
TCCCATCATTCAGATCACGACAATGATCCCTCGCACCACGATAATGATCA
TTCGCATCACGATAATGATCCCTCGCACAACGATAATGATCATTCGGACC
ACGACAACGGTCATTCGGACCACACACCGGATTCTCCCTCCCCCTACCCA
TCTCCTCCGACGCCCGAACCCCCCTCCCCCTCTCCTTCCCCCTCACCCTC
TCCCTCCCTCTACCCCTCCGCCTGGGTGCCAATCGCACCCACCACGCCCA
ACGCTCCAAGGGAGCCTGTGAACCCGGCCCCTCCGGCCGCGACTCCTACC
ACGACTCCCACCTACCCCGCCGTCCCTCCAACGCCTGCCATAATTCCTCC
GACACCTCCCGCAATCCCTCCGCCTACGCCTGCCACAACTCCTCCGACCC
CTCCCGTGACCCCTCCAACGCCTGCCACAACTCCTCCGACCCCCCCGTAA
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Coding sequence (CDS) from alignment at chr24:666447..668196-

>NO24G02430.1 ID=NO24G02430.1|Name=NO24G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr24:666447..668196- (Nannochloropsis oceanica)
ATGCCCAACCCACAGGGAAGGATGAAGCGCCGTCGGGCTTCGACCACCTC
TTCGTTCCACCTCCCCATCCTCCCTGCCACCCTCTTCGCCTCCCTCCTCT
TTCTCCTCTTCCCCAAACCCACTCACGCCGGCTACTTCCGTGGGGCGCCA
CCACCGGAGCCGGGTCAGTGCACGTATGTCGAAGGTATATACATCGAGGA
TGCTGTGAATGCCCTGGCCAAGTGCGTGGAGACCAGCCCTGATGGGATCA
AGTACTCCTTGAATAAGGAGGACGACTTAGGGCACGGCGATGTGTTAGGG
GGCTTAGAACTCAAGAATCTGAACAAGTGCCTGGAGAAGGTCAAGGAAGA
CAAGGGCGAGAAGGAGATGGACGAGGAGTGTGTAAAATACGTGAAGAAGT
TCCAGGAGACGGGCAATAATAGCGATGGAAAGGAGCCGGCGGGTAAGGTG
GCTAAGAAGCTTATGTACGATTATGACAACTTCTGCTACTGCATGGCCAC
GATTGACCCCTCGGAGATCTTTTGCTATGGCATGGGTGTGGCCCCCACCA
TCAAGTACATCCGCGAAACCTGTGACCTCGCCTATTACAAGTACGTCCGC
AAAGTCCTCTACGAGAAGCCCTATGAGAAACCCTCCTATCCGTCCCCCGA
CCCTCACCCCCCTTCTCATCCCGAGCCGGCTCCTTCTCCCGACTATCCCT
CCCACGACCCGCACCACGATGCATCAGACCCCCCATCCCCCTACCCCCCC
TCACCCTTTCCTTCGGATCACGACAACGATCATTGGGGTCACGACAACGA
TCATTGGGATCATGGCAACGATCACTCCGACCACGACTCCCATCATTCAG
ATCACGACAACGATCACTCGGATCACGACAACGATCACTCCGACCACGAC
TCCCATCATTCAGATCACGACAATGATCCCTCGCACCACGATAATGATCA
TTCGCATCACGATAATGATCCCTCGCACAACGATAATGATCATTCGGACC
ACGACAACGGTCATTCGGACCACACACCGGATTCTCCCTCCCCCTACCCA
TCTCCTCCGACGCCCGAACCCCCCTCCCCCTCTCCTTCCCCCTCACCCTC
TCCCTCCCTCTACCCCTCCGCCTGGGTGCCAATCGCACCCACCACGCCCA
ACGCTCCAAGGGAGCCTGTGAACCCGGCCCCTCCGGCCGCGACTCCTACC
ACGACTCCCACCTACCCCGCCGTCCCTCCAACGCCTGCCATAATTCCTCC
GACACCTCCCGCAATCCCTCCGCCTACGCCTGCCACAACTCCTCCGACCC
CTCCCGTGACCCCTCCAACGCCTGCCACAACTCCTCCGACCCCCCCGTAA
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Synonyms
Publications