NO24G02380, NO24G02380 (gene) Nannochloropsis oceanica

Overview
NameNO24G02380
Unique NameNO24G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2360
Alignment locationchr24:654124..656483 +

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Properties
Property NameValue
DescriptionAdenylate kinase isoenzyme 6 homolog, Transcription initiation factor TFIID subunit 9 / adenylate kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:654124..656483 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004017adenylate kinase activity
GO:0016787hydrolase activity
GO:0016301kinase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR020618Adenyl_kinase_AK6
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO24G02380 vs. NCBI_GenBank
Match: EWM24450.1 (adenylate kinase isoenzyme 6 [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 2.000e-56
Identity = 110/138 (79.71%), Postives = 122/138 (88.41%), Query Frame = 0
Query:   66 PRQTTPLLRAGLKRPNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQV 204
            P +T PLLRA LKRPNILITGTPGTGKTTTAR IA ATGL H++VGD+ KE +C+EG+D ELDT ILDE+KLLD +E++LADGG VVDYHSCELFPERWFDL+LVVRA NA LFDRLSARGYS RKR ENLECEIMQV
Sbjct:    6 PHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQV 143          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: XP_005855774.1 (transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526] >EKU20578.1 transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.5 bits (532), Expect = 1.200e-50
Identity = 100/124 (80.65%), Postives = 111/124 (89.52%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQV 204
            PNILITGTPGTGKTTTAR IA ATGL H++VGD+ KE +C+EG+D ELDT ILDE+KLLD +E++LADGG VVDYHSCELFPERWFDL+LVVRA NA LFDRLSARGYS RKR ENLECEIMQV
Sbjct:    1 PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQV 124          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: SAM03764.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 193.4 bits (490), Expect = 9.100e-46
Identity = 92/133 (69.17%), Postives = 111/133 (83.46%), Query Frame = 0
Query:   78 KRPNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKE 211
            K PNIL+TGTPGTGKTTT+  IAEATGL+H+NVG+L+K  + YEG  EE DT+ILDEDKLLD ME LL +GG+VVDYH+CELFPERWFDLVLV+RA   TLFDR+  RGY+ +KR+EN+ECEIMQV  +  +E
Sbjct:    4 KLPNILVTGTPGTGKTTTSEMIAEATGLTHVNVGELIKAGQFYEGYLEEYDTHILDEDKLLDEMEDLLKEGGNVVDYHTCELFPERWFDLVLVLRAQTHTLFDRMEKRGYNQKKRDENMECEIMQVVLDEARE 136          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: CBN76984.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 191.8 bits (486), Expect = 2.700e-45
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKEG 212
            PN+LITGTPGTGKT T++ IAE TGL H+NVGD+V+  +C+EG+DE  DT+ILDEDKL D ME  + +GG+V+D+HSC+ FPE WFDL+LV+RA+ +TLFDRL ARGYS +K  EN+ECEIMQV  E  KEG
Sbjct:    7 PNVLITGTPGTGKTCTSQQIAERTGLRHINVGDVVRLKQCHEGRDESFDTFILDEDKLCDAMETQMEEGGNVIDFHSCDFFPEHWFDLILVLRAETSTLFDRLKARGYSEKKVGENVECEIMQVVLEEAKEG 138          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: ORZ22307.1 (AAA domain-domain-containing protein [Absidia repens])

HSP 1 Score: 190.3 bits (482), Expect = 7.700e-45
Identity = 89/133 (66.92%), Postives = 109/133 (81.95%), Query Frame = 0
Query:   78 KRPNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKE 211
            K PNIL+TGTPGTGKTTT+  IA+ TGL+H+NVGDL+K  + YEG  EE DT+ILDEDKLLD +E ++ +GG VVDYH+CELFPERWFDLVLV+RA   TLFDR+  RGY+ +KR+EN+ECEIMQV  +  KE
Sbjct:    6 KLPNILVTGTPGTGKTTTSEMIAQVTGLTHINVGDLIKSKQFYEGYLEEYDTHILDEDKLLDDLEDVMQEGGKVVDYHTCELFPERWFDLVLVLRAQTHTLFDRMEKRGYNQKKRDENMECEIMQVVLDEAKE 138          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: OAD03564.1 (hypothetical protein MUCCIDRAFT_178813 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 187.2 bits (474), Expect = 6.500e-44
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKE 211
            PNIL+TGTPGTGKTTT+  IAEATGL H+NVGD+VK  + +EG  EE DT++LDEDKLLD +E +L DGG VVD+H+CE+FPERWFDLVLV+RAD ++L+DR+  RGY+ RK +EN+ECEIMQV  E   E
Sbjct:    6 PNILVTGTPGTGKTTTSEMIAEATGLEHVNVGDIVKSKQLHEGYLEEFDTHVLDEDKLLDELEEMLKDGGKVVDFHTCEIFPERWFDLVLVLRADTSSLYDRMPCRGYNKRKIDENMECEIMQVVLETAHE 136          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: OAQ27615.1 (P-loop containing nucleoside triphosphate hydrolase protein [Mortierella elongata AG-77])

HSP 1 Score: 186.8 bits (473), Expect = 8.500e-44
Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKEGGRE 215
            PNILITGTPGTGKTTT+   AEATGL+H+NVGDLVK    +EG D E D+YILDEDKL+D ME ++  GG +VD+H+CE+FPERWFDLV+V+R DN  L+ RL +RGY+A+K NEN+ECEIMQV  E  +E   E
Sbjct:   19 PNILITGTPGTGKTTTSEMAAEATGLTHINVGDLVKAKSLHEGLDTEYDSYILDEDKLIDEMEEMMRPGGKIVDFHTCEIFPERWFDLVIVLRTDNGVLYPRLESRGYNAKKINENMECEIMQVVLEEARESYEE 153          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: EPB83794.1 (hypothetical protein HMPREF1544_09427 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 186.4 bits (472), Expect = 1.100e-43
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKE 211
            PNIL+TGTPGTGKTTT+  IAEATGL H+NVGD+VK  + +EG  EE DT++LDEDKLLD +E +L DGG VVD+H+CE+FPERWFDLVLV+RAD ++L+DR+  RGY+ RK +EN+ECEIMQV  E   E
Sbjct:    6 PNILVTGTPGTGKTTTSEMIAEATGLEHVNVGDIVKSKQLHEGYLEEFDTHVLDEDKLLDELEEMLKDGGKVVDFHTCEIFPERWFDLVLVLRADTSSLYDRMVKRGYNKRKIDENMECEIMQVVLETAHE 136          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: XP_021885568.1 (AAA domain-domain-containing protein [Lobosporangium transversale] >ORZ27865.1 AAA domain-domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 185.7 bits (470), Expect = 1.900e-43
Identity = 86/135 (63.70%), Postives = 108/135 (80.00%), Query Frame = 0
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKEGGRE 215
            PNILITGTPGTGKTTT+   AEATGL+HLNVGDLVK    +EG D + D+YILDEDKL+D ME ++  GG +VD+H+C++FPERWFDLV+V+R DN+ L+ RL +RGY+A+K NEN+ECEIMQV  E  +E   E
Sbjct:   20 PNILITGTPGTGKTTTSEMAAEATGLTHLNVGDLVKTKSLHEGLDTDFDSYILDEDKLIDEMEDMMKPGGKIVDFHTCDIFPERWFDLVIVLRTDNSVLYPRLESRGYNAKKINENMECEIMQVVLEDARESYAE 154          
BLAST of NO24G02380 vs. NCBI_GenBank
Match: KFH72756.1 (transcription initiation factor TFIID subunit D7 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 184.5 bits (467), Expect = 4.200e-43
Identity = 88/136 (64.71%), Postives = 106/136 (77.94%), Query Frame = 0
Query:   79 RPNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVAWEGRKEGGRE 215
            RPNILITGTPGTGKTTT+   AEA+GL H+NVGDLVK    +EG D E D+YILDEDKL+D ME  +  GG+VVD+H+CE+FPERWFDLV+V+R DN  L+ RL  RGY+A+K NEN+ECEIMQV  E  +E   E
Sbjct:   19 RPNILITGTPGTGKTTTSEMAAEASGLKHINVGDLVKAKGLHEGLDTEYDSYILDEDKLIDEMEDFMRPGGNVVDFHTCEIFPERWFDLVIVLRTDNNILYPRLEGRGYNAKKINENMECEIMQVVLEDARESYAE 154          
The following BLAST results are available for this feature:
BLAST of NO24G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24450.12.000e-5679.71adenylate kinase isoenzyme 6 [Nannochloropsis gadi... [more]
XP_005855774.11.200e-5080.65transcription initiation factor TFIID subunit 9 / ... [more]
SAM03764.19.100e-4669.17hypothetical protein [Absidia glauca][more]
CBN76984.12.700e-4565.15conserved unknown protein [Ectocarpus siliculosus][more]
ORZ22307.17.700e-4566.92AAA domain-domain-containing protein [Absidia repe... [more]
OAD03564.16.500e-4466.41hypothetical protein MUCCIDRAFT_178813 [Mucor circ... [more]
OAQ27615.18.500e-4464.44P-loop containing nucleoside triphosphate hydrolas... [more]
EPB83794.11.100e-4366.41hypothetical protein HMPREF1544_09427 [Mucor circi... [more]
XP_021885568.11.900e-4363.70AAA domain-domain-containing protein [Lobosporangi... [more]
KFH72756.14.200e-4364.71transcription initiation factor TFIID subunit D7 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02380.1NO24G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G02380.2NO24G02380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611277gene_10384Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100486g4gene6028Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02380.1NO24G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G02380.2NO24G02380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02380 ID=NO24G02380|Name=NO24G02380|organism=Nannochloropsis oceanica|type=gene|length=2360bp
GGCTGATCGCGTGGCCATGGCTGTACATTTTGTACGAGGGTGAGGAGAAG
GGGGGCGGGCGTTTTAATTTTCTTGGGCTTCTGCCGATATACAGCAAGAT
CGCGCTAGAGAGAACAACAGAGAAGACGTCTAGAGACCTGGATGGTAAGC
TTGGGTAGTCCGTGTGAGCTGTAGTGGTCTGTGGAGTGCGATTTAGTCGC
GCAAGGGGGCATGGGGAGAGAAGGAGGCAAGTTCGCCGACAAAAACAGGC
GTTGAAGAGCAGAAAGTCAATTCTTCCTTTCACCAGCGGCTCGAACAACG
ACCCCCACACACTAAATACACATATAGATAGAGAAAGGCACAGATGCGGG
GCCGGCACATGGTAGATGTGACGGGGACGAAGGAGCCGTGTGTCTCATTT
CTTGGCCTGGCGACGCCTGCGTCACGACAATCACCATGCAACGGCCGTGT
GCAGCCTCCTCCCCCACTAAATGGTGCAGTACAGTACGCCAGCCATATTA
GAGCTCTTCGCCGTGCCCCTGGTCTGTCACCACTTGCACGGACATGATGA
CGAGCAGCCCTACCTCGCTTACCCATGCCGCTCTCTTTGTGTCCTTTCCT
CTCCTCACTCTTCAAACCCCCCCGAAACTCAAATGATTAGATACTCCAAG
CCCAACATGGCCACCCCCAGACAAACTACGCCGCTCCTCCGCGCGGGATT
GAAGCGGCCCAACATTCTCATCACCGGCACGCCTGGCACGGGCAAGACCA
CTACTGCCCGGTCCATTGCGgtacgtcccgagccgggggaaggaaggagg
acagagggagaccagggacgtgagggggtgggggaagagagaagaggcta
aaaacgtcgccggggtcaaaataaggagacctttactcgtcattttttgg
tttctcccttactcaattccccttcccccccccctcaaaaaagtgtgaga
gatcgcctacgctttaatgagactcacatgtttcatccttcccttcattc
ctccctcctttcctgtccactccacagGAAGCCACCGGCTTATCCCACCT
CAACGTGGGAGACCTTGTCAAAGAGGCCAAGTGCTATGAAGGGAAGGACG
AGGAGCTCGACACATACATCTTGGACGAGGACAAGgtatgcttcttccgt
cccttccttcatccttccctttcctccctccacatgatcagcttaatatc
catgcgcattctcttgcttacatctttcctcctttttctcttatctttat
cagCTGCTAGACTGCATGGAGGTCCTGTTGGCGGACGGGGGACACGTGGT
TGATTATCACTCCTGCGAGCTCTTCCCCGAACGgtgggtccccccattct
tccctctctccttccctcccggcctcctttaggcactctttttactttta
cgtctcgtgtacttctcctccgccattcatcctccaaatgccagtattta
aattgtaaacgcactctccctaatcactgtccctccctcactccctccct
ccctccccccccttcccagATGGTTCGATTTGGTGCTGGTCGTGCGCGCG
GACAACGCCACGCTCTTTGACCGGCTCTCGGCCCGCGGATACAGCGCACG
GAAGCGGAATGAGAACTTAGAATGCGAGATCATGCAGgtggcgtgggagg
gaagaaaggagggagggagggagggaaggggtgggcgtgctcccacgtcg
cgttgcgtgtgtccgtccacacgaagtaagaacattcaaacaggcaagcc
aactccatccacctctttcttcctctctttcctcccctctgcagGTGGTA
CTCGAAGAGGCCCGTGAAAGCTACGACGAGCCGCTGGTCCACGAAATCAC
CAGCCAAAATGAAGATGATCTGCGAGGAAACGTAGAACGAGTCATGGTCT
GGGTTGAGCAATGGAAGgtaggcgtcgggtggatgaggatatgactgcta
agcacatttctatttatctcctcttcgtcgttgtctcgcacaccttccat
ccctttcctcctttctccattcctattctttcctctcatctttcttctca
ccacccctcccatccccctccctttcgacagGCGGACTGCGATGCCCGGG
TGAAAGAGTTATCAGAAATGGAAGAATAAAGCAATATAACAGCAAGTGCA
GCAGTTCGTGTGCTTGAAAGGGACAAGGATGATGATTGAGGGCTTGGAGA
GAGGAAGGGAAAGACAGAAAGCATAAAAGAAAGTTTTAGGAGCTACTTCT
TGTCCGCGACGAACATGAGCAATAGTTTTCCGATCCAAAGACGCCTGATA
ATCAAAACAAAAATGATGCATGAGCACGACTGACCAACAGCAACAGTGGC
AGCAGCTCAC
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protein sequence of NO24G02380.1

>NO24G02380.1-protein ID=NO24G02380.1-protein|Name=NO24G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVQYSTPAILELFAVPLVCHHLHGHDDEQPYLAYPCRSLCVLSSPHSSNP
PETQMIRYSKPNMATPRQTTPLLRAGLKRPNILITGTPGTGKTTTARSIA
EATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGH
VVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEI
MQVVLEEARESYDEPLVHEITSQNEDDLRGNVERVMVWVEQWKADCDARV
KELSEMEE*
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protein sequence of NO24G02380.2

>NO24G02380.2-protein ID=NO24G02380.2-protein|Name=NO24G02380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MVQYSTPAILELFAVPLVCHHLHGHDDEQPYLAYPCRSLCVLSSPHSSNP
PETQMIRYSKPNMATPRQTTPLLRAGLKRPNILITGTPGTGKTTTARSIA
EATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGH
VVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEI
MQVAWEGRKEGGREGRGGRAPTSRCVCPSTRSKNIQTGKPTPSTSFFLSF
LPSAGGTRRGP*
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Synonyms
Publications