NO24G02380.1, NO24G02380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02380.1
Unique NameNO24G02380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1478
Alignment locationchr24:654124..656483 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:654124..656483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02380.1 vs.
Match: XP_005855774.1 (transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526]; EKU20578.1 transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 272.3 bits (695), Expect = 1.500e-69
Identity = 132/179 (73.74%), Postives = 152/179 (84.92%), Query Frame = 0 
Query:   80 PNILITGTPGTGKTTTARSIAEATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGHVVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEIMQVVLEEARESYDEPLVHEITSQNEDDLRGNVERVMVWVEQWKADCDARVKELSEMEE 259
            PNILITGTPGTGKTTTAR IA ATGL H++VGD+ KE +C+EG+D ELDT ILDE+KLLD +E++LADGG VVDYHSCELFPERWFDL+LVVRA NA LFDRLSARGYS RKR ENLECEIMQVVL+EA ESY++ +VHEITS+ EDDL+ N +RV  W+ QWK DC  RV+E   MEE
Sbjct:    1 PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLTQWKVDCRDRVQEAEGMEE 179
The following BLAST results are available for this feature:
BLAST of NO24G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855774.11.500e-6973.74transcription initiation factor TFIID subunit 9 / ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02380NO24G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02380.1NO24G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02380.1.cds1NO24G02380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02380.1.cds2NO24G02380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02380.1.cds3NO24G02380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02380.1.cds4NO24G02380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02380.1.cds5NO24G02380.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02380.1.cds6NO24G02380.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02380.1 ID=NO24G02380.1|Name=NO24G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp
GGCTGATCGCGTGGCCATGGCTGTACATTTTGTACGAGGGTGAGGAGAAG
GGGGGCGGGCGTTTTAATTTTCTTGGGCTTCTGCCGATATACAGCAAGAT
CGCGCTAGAGAGAACAACAGAGAAGACGTCTAGAGACCTGGATGGTAAGC
TTGGGTAGTCCGTGTGAGCTGTAGTGGTCTGTGGAGTGCGATTTAGTCGC
GCAAGGGGGCATGGGGAGAGAAGGAGGCAAGTTCGCCGACAAAAACAGGC
GTTGAAGAGCAGAAAGTCAATTCTTCCTTTCACCAGCGGCTCGAACAACG
ACCCCCACACACTAAATACACATATAGATAGAGAAAGGCACAGATGCGGG
GCCGGCACATGGTAGATGTGACGGGGACGAAGGAGCCGTGTGTCTCATTT
CTTGGCCTGGCGACGCCTGCGTCACGACAATCACCATGCAACGGCCGTGT
GCAGCCTCCTCCCCCACTAAATGGTGCAGTACAGTACGCCAGCCATATTA
GAGCTCTTCGCCGTGCCCCTGGTCTGTCACCACTTGCACGGACATGATGA
CGAGCAGCCCTACCTCGCTTACCCATGCCGCTCTCTTTGTGTCCTTTCCT
CTCCTCACTCTTCAAACCCCCCCGAAACTCAAATGATTAGATACTCCAAG
CCCAACATGGCCACCCCCAGACAAACTACGCCGCTCCTCCGCGCGGGATT
GAAGCGGCCCAACATTCTCATCACCGGCACGCCTGGCACGGGCAAGACCA
CTACTGCCCGGTCCATTGCGGAAGCCACCGGCTTATCCCACCTCAACGTG
GGAGACCTTGTCAAAGAGGCCAAGTGCTATGAAGGGAAGGACGAGGAGCT
CGACACATACATCTTGGACGAGGACAAGCTGCTAGACTGCATGGAGGTCC
TGTTGGCGGACGGGGGACACGTGGTTGATTATCACTCCTGCGAGCTCTTC
CCCGAACGATGGTTCGATTTGGTGCTGGTCGTGCGCGCGGACAACGCCAC
GCTCTTTGACCGGCTCTCGGCCCGCGGATACAGCGCACGGAAGCGGAATG
AGAACTTAGAATGCGAGATCATGCAGGTGGTACTCGAAGAGGCCCGTGAA
AGCTACGACGAGCCGCTGGTCCACGAAATCACCAGCCAAAATGAAGATGA
TCTGCGAGGAAACGTAGAACGAGTCATGGTCTGGGTTGAGCAATGGAAGG
CGGACTGCGATGCCCGGGTGAAAGAGTTATCAGAAATGGAAGAATAAAGC
AATATAACAGCAAGTGCAGCAGTTCGTGTGCTTGAAAGGGACAAGGATGA
TGATTGAGGGCTTGGAGAGAGGAAGGGAAAGACAGAAAGCATAAAAGAAA
GTTTTAGGAGCTACTTCTTGTCCGCGACGAACATGAGCAATAGTTTTCCG
ATCCAAAGACGCCTGATAATCAAAACAAAAATGATGCATGAGCACGACTG
ACCAACAGCAACAGTGGCAGCAGCTCAC
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protein sequence of NO24G02380.1

>NO24G02380.1-protein ID=NO24G02380.1-protein|Name=NO24G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVQYSTPAILELFAVPLVCHHLHGHDDEQPYLAYPCRSLCVLSSPHSSNP
PETQMIRYSKPNMATPRQTTPLLRAGLKRPNILITGTPGTGKTTTARSIA
EATGLSHLNVGDLVKEAKCYEGKDEELDTYILDEDKLLDCMEVLLADGGH
VVDYHSCELFPERWFDLVLVVRADNATLFDRLSARGYSARKRNENLECEI
MQVVLEEARESYDEPLVHEITSQNEDDLRGNVERVMVWVEQWKADCDARV
KELSEMEE*
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mRNA from alignment at chr24:654124..656483+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02380.1 ID=NO24G02380.1|Name=NO24G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp|location=Sequence derived from alignment at chr24:654124..656483+ (Nannochloropsis oceanica)
GGCTGATCGCGTGGCCATGGCTGTACATTTTGTACGAGGGTGAGGAGAAG
GGGGGCGGGCGTTTTAATTTTCTTGGGCTTCTGCCGATATACAGCAAGAT
CGCGCTAGAGAGAACAACAGAGAAGACGTCTAGAGACCTGGATGGTAAGC
TTGGGTAGTCCGTGTGAGCTGTAGTGGTCTGTGGAGTGCGATTTAGTCGC
GCAAGGGGGCATGGGGAGAGAAGGAGGCAAGTTCGCCGACAAAAACAGGC
GTTGAAGAGCAGAAAGTCAATTCTTCCTTTCACCAGCGGCTCGAACAACG
ACCCCCACACACTAAATACACATATAGATAGAGAAAGGCACAGATGCGGG
GCCGGCACATGGTAGATGTGACGGGGACGAAGGAGCCGTGTGTCTCATTT
CTTGGCCTGGCGACGCCTGCGTCACGACAATCACCATGCAACGGCCGTGT
GCAGCCTCCTCCCCCACTAAATGGTGCAGTACAGTACGCCAGCCATATTA
GAGCTCTTCGCCGTGCCCCTGGTCTGTCACCACTTGCACGGACATGATGA
CGAGCAGCCCTACCTCGCTTACCCATGCCGCTCTCTTTGTGTCCTTTCCT
CTCCTCACTCTTCAAACCCCCCCGAAACTCAAATGATTAGATACTCCAAG
CCCAACATGGCCACCCCCAGACAAACTACGCCGCTCCTCCGCGCGGGATT
GAAGCGGCCCAACATTCTCATCACCGGCACGCCTGGCACGGGCAAGACCA
CTACTGCCCGGTCCATTGCGGTACGTCCCGAGCCGGGGGAAGGAAGGAGG
ACAGAGGGAGACCAGGGACGTGAGGGGGTGGGGGAAGAGAGAAGAGGCTA
AAAACGTCGCCGGGGTCAAAATAAGGAGACCTTTACTCGTCATTTTTTGG
TTTCTCCCTTACTCAATTCCCCTTCCCCCCCCCCTCAAAAAAGTGTGAGA
GATCGCCTACGCTTTAATGAGACTCACATGTTTCATCCTTCCCTTCATTC
CTCCCTCCTTTCCTGTCCACTCCACAGGAAGCCACCGGCTTATCCCACCT
CAACGTGGGAGACCTTGTCAAAGAGGCCAAGTGCTATGAAGGGAAGGACG
AGGAGCTCGACACATACATCTTGGACGAGGACAAGGTATGCTTCTTCCGT
CCCTTCCTTCATCCTTCCCTTTCCTCCCTCCACATGATCAGCTTAATATC
CATGCGCATTCTCTTGCTTACATCTTTCCTCCTTTTTCTCTTATCTTTAT
CAGCTGCTAGACTGCATGGAGGTCCTGTTGGCGGACGGGGGACACGTGGT
TGATTATCACTCCTGCGAGCTCTTCCCCGAACGGTGGGTCCCCCCATTCT
TCCCTCTCTCCTTCCCTCCCGGCCTCCTTTAGGCACTCTTTTTACTTTTA
CGTCTCGTGTACTTCTCCTCCGCCATTCATCCTCCAAATGCCAGTATTTA
AATTGTAAACGCACTCTCCCTAATCACTGTCCCTCCCTCACTCCCTCCCT
CCCTCCCCCCCCTTCCCAGATGGTTCGATTTGGTGCTGGTCGTGCGCGCG
GACAACGCCACGCTCTTTGACCGGCTCTCGGCCCGCGGATACAGCGCACG
GAAGCGGAATGAGAACTTAGAATGCGAGATCATGCAGGTGGCGTGGGAGG
GAAGAAAGGAGGGAGGGAGGGAGGGAAGGGGTGGGCGTGCTCCCACGTCG
CGTTGCGTGTGTCCGTCCACACGAAGTAAGAACATTCAAACAGGCAAGCC
AACTCCATCCACCTCTTTCTTCCTCTCTTTCCTCCCCTCTGCAGGTGGTA
CTCGAAGAGGCCCGTGAAAGCTACGACGAGCCGCTGGTCCACGAAATCAC
CAGCCAAAATGAAGATGATCTGCGAGGAAACGTAGAACGAGTCATGGTCT
GGGTTGAGCAATGGAAGGTAGGCGTCGGGTGGATGAGGATATGACTGCTA
AGCACATTTCTATTTATCTCCTCTTCGTCGTTGTCTCGCACACCTTCCAT
CCCTTTCCTCCTTTCTCCATTCCTATTCTTTCCTCTCATCTTTCTTCTCA
CCACCCCTCCCATCCCCCTCCCTTTCGACAGGCGGACTGCGATGCCCGGG
TGAAAGAGTTATCAGAAATGGAAGAATAAAGCAATATAACAGCAAGTGCA
GCAGTTCGTGTGCTTGAAAGGGACAAGGATGATGATTGAGGGCTTGGAGA
GAGGAAGGGAAAGACAGAAAGCATAAAAGAAAGTTTTAGGAGCTACTTCT
TGTCCGCGACGAACATGAGCAATAGTTTTCCGATCCAAAGACGCCTGATA
ATCAAAACAAAAATGATGCATGAGCACGACTGACCAACAGCAACAGTGGC
AGCAGCTCAC
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Coding sequence (CDS) from alignment at chr24:654124..656483+

>NO24G02380.1 ID=NO24G02380.1|Name=NO24G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr24:654124..656483+ (Nannochloropsis oceanica)
ATGGTGCAGTACAGTACGCCAGCCATATTAGAGCTCTTCGCCGTGCCCCT
GGTCTGTCACCACTTGCACGGACATGATGACGAGCAGCCCTACCTCGCTT
ACCCATGCCGCTCTCTTTGTGTCCTTTCCTCTCCTCACTCTTCAAACCCC
CCCGAAACTCAAATGATTAGATACTCCAAGCCCAACATGGCCACCCCCAG
ACAAACTACGCCGCTCCTCCGCGCGGGATTGAAGCGGCCCAACATTCTCA
TCACCGGCACGCCTGGCACGGGCAAGACCACTACTGCCCGGTCCATTGCG
GAAGCCACCGGCTTATCCCACCTCAACGTGGGAGACCTTGTCAAAGAGGC
CAAGTGCTATGAAGGGAAGGACGAGGAGCTCGACACATACATCTTGGACG
AGGACAAGCTGCTAGACTGCATGGAGGTCCTGTTGGCGGACGGGGGACAC
GTGGTTGATTATCACTCCTGCGAGCTCTTCCCCGAACGATGGTTCGATTT
GGTGCTGGTCGTGCGCGCGGACAACGCCACGCTCTTTGACCGGCTCTCGG
CCCGCGGATACAGCGCACGGAAGCGGAATGAGAACTTAGAATGCGAGATC
ATGCAGGTGGTACTCGAAGAGGCCCGTGAAAGCTACGACGAGCCGCTGGT
CCACGAAATCACCAGCCAAAATGAAGATGATCTGCGAGGAAACGTAGAAC
GAGTCATGGTCTGGGTTGAGCAATGGAAGGCGGACTGCGATGCCCGGGTG
AAAGAGTTATCAGAAATGGAAGAATAA
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Synonyms
Publications