NO24G02340, NO24G02340 (gene) Nannochloropsis oceanica

Overview
NameNO24G02340
Unique NameNO24G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1957
Alignment locationchr24:636367..638323 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:636367..638323 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026894DnaJ_X
Homology
The following BLAST results are available for this feature:
BLAST of NO24G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02340.1NO24G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611264gene_10380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02340.1NO24G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02340 ID=NO24G02340|Name=NO24G02340|organism=Nannochloropsis oceanica|type=gene|length=1957bp
ATGCAGgtaagaaagggaaggagggaatgatagagggagggaaggaaaga
tgaggtggtgagacagaatattccgtcaaagtaaaatctccctccctccc
tccctccctccctccctccctccctccctccctccctccctagCGCCAAG
CCGAGGTGGCAGGGGCGACACTGCAGGGCCTTAAGCTGGGGAAGAAATTT
GTGGATGTCTACTCGCCCTCCTCCTCTCCCTCGACCCCGATGGGAAGAGC
AGGAGGAAACGAAAGAGGAGCAGGAGGAGGAGGGAAGAAAAAATTCTTTg
tgagtgtggaaaggggagagagtggtggagggaggaagggagggagatag
aaagaggggaagggagggagagagatagattatccaaatcattcttgttt
gattccctccttagcatgacctcctacacacgtgaccccagtaccaccaa
ccctctcaccaccaataccaatgccatcaatactgactgcaatgctgaca
ccaatcgtcaccagcaataccaactgcaataccatcaaccttcacatcca
ccctaacaaacgccaacatgattctaccacgcagAATCGCAACGCCTCCG
CCCCCGACCTCTCCACTCAAACCAAATCCAAGGGAGCCAGCAGCACCCGC
AGCCGCAGCAGCAAGATGCACTCTTCTCCTCGCCCGCCCTCCCACCAGCC
CTCCTCCTCCTCTGCCTCCATCTCCACGGAGTCGACCACTCCCGAGAATC
TAACCCCCGACCCGCAGCATTATGCAATGCCAACAGCAGCAGCAGCTACA
GGAGCCGCACCAACAATATCAACCAAAACGGCAACGGGCTGGGGGCAGgt
ggggaggctgagaggggaggaagggagagagggagggagagagagaggga
ggggaggaagaatagatagattatatatatagatagatatccgaaagaga
cacgaaaacttgaatggcataaaaacaagaggctgtccatccattctcat
accatacatgctcccttcccctcccctccccactctctcgctcgctctct
cccttgcgtgctctcctgccctccctccagCCCTCGTCTGCCGAGACGAA
GTTGGAAGAGGATGGATTGCCGCACCTGGTGTCCATCATGTGGAAACTCG
CCGCCTACGACATTGGCGAAACCGTGGGGAGGGCTTGTGGGAAGgtagga
ggggagggagggagggagggagggaaggagggtgggggaagccgtgcagt
ttcgtccatgctgacgctcattggaatgaccaaatgatttataacagGCT
TTGAGCGACACCAGTGTGAGCAAAGAAGAACGACGACAGCGAGCGAAAGg
tgcgtgtgaacatcaagataaacataggaattctacccactttcctccct
cgactcacacccctgtctccctccctccctccctccctccctccctagGC
CTGGCTGCCCTGGGGAAAGCATTCAAAGAGGCCGCGGATCGTGTCCTGGC
ATCGGCGGGTGGTGCGGTGAATTACCGGAAGGAGTGGGAGGCATTGGACA
GGGAGTTTATGCATAGgtaggtagaggggagggagggaggtagggagaga
gggagaggaagggagggagcgaaggagtcgagatgaaatgcttgttgata
agggatctagtcctttgctgcttaatttcttatcgaaacctcaaattctc
cctcttttcctccctccctccctctgtcactccctccctccatcacttcc
gccagATACGAATCCTCGACGTCCATTCACACAATGGCTTCATCGGGCTC
GACCTCTTCATTCCCTCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGC
AGGTGGCCACCCACCATCAAGAGTCATTCAGCCAGGAGGCTGCACAAGGA
GGAGACGAGGACAAAGAGGAAGAGGAGGACGAGGAGGAAGGGGGAATTGT
ACTTTAA
back to top

protein sequence of NO24G02340.1

>NO24G02340.1-protein ID=NO24G02340.1-protein|Name=NO24G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MQRQAEVAGATLQGLKLGKKFVDVYSPSSSPSTPMGRAGGNERGAGGGGK
KKFFNRNASAPDLSTQTKSKGASSTRSRSSKMHSSPRPPSHQPSSSSASI
STESTTPENLTPDPQHYAMPTAAAATGAAPTISTKTATGWGQPSSAETKL
EEDGLPHLVSIMWKLAAYDIGETVGRACGKALSDTSVSKEERRQRAKGLA
ALGKAFKEAADRVLASAGGAVNYRKEWEALDREFMHRYESSTSIHTMASS
GSTSSFPQQQQQQQQQQQQVATHHQESFSQEAAQGGDEDKEEEEDEEEGG
IVL*
back to top
Synonyms
Publications