NO24G02340.1, NO24G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02340.1
Unique NameNO24G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length912
Alignment locationchr24:636367..638323 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:636367..638323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02340NO24G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02340.1NO24G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02340.1.cds1NO24G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds2NO24G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds3NO24G02340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds4NO24G02340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds5NO24G02340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds6NO24G02340.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02340.1.cds7NO24G02340.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02340.1 ID=NO24G02340.1|Name=NO24G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
ATGCAGCGCCAAGCCGAGGTGGCAGGGGCGACACTGCAGGGCCTTAAGCT
GGGGAAGAAATTTGTGGATGTCTACTCGCCCTCCTCCTCTCCCTCGACCC
CGATGGGAAGAGCAGGAGGAAACGAAAGAGGAGCAGGAGGAGGAGGGAAG
AAAAAATTCTTTAATCGCAACGCCTCCGCCCCCGACCTCTCCACTCAAAC
CAAATCCAAGGGAGCCAGCAGCACCCGCAGCCGCAGCAGCAAGATGCACT
CTTCTCCTCGCCCGCCCTCCCACCAGCCCTCCTCCTCCTCTGCCTCCATC
TCCACGGAGTCGACCACTCCCGAGAATCTAACCCCCGACCCGCAGCATTA
TGCAATGCCAACAGCAGCAGCAGCTACAGGAGCCGCACCAACAATATCAA
CCAAAACGGCAACGGGCTGGGGGCAGCCCTCGTCTGCCGAGACGAAGTTG
GAAGAGGATGGATTGCCGCACCTGGTGTCCATCATGTGGAAACTCGCCGC
CTACGACATTGGCGAAACCGTGGGGAGGGCTTGTGGGAAGGCTTTGAGCG
ACACCAGTGTGAGCAAAGAAGAACGACGACAGCGAGCGAAAGGCCTGGCT
GCCCTGGGGAAAGCATTCAAAGAGGCCGCGGATCGTGTCCTGGCATCGGC
GGGTGGTGCGGTGAATTACCGGAAGGAGTGGGAGGCATTGGACAGGGAGT
TTATGCATAGATACGAATCCTCGACGTCCATTCACACAATGGCTTCATCG
GGCTCGACCTCTTCATTCCCTCAGCAGCAACAGCAACAGCAGCAGCAGCA
GCAGCAGGTGGCCACCCACCATCAAGAGTCATTCAGCCAGGAGGCTGCAC
AAGGAGGAGACGAGGACAAAGAGGAAGAGGAGGACGAGGAGGAAGGGGGA
ATTGTACTTTAA
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protein sequence of NO24G02340.1

>NO24G02340.1-protein ID=NO24G02340.1-protein|Name=NO24G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MQRQAEVAGATLQGLKLGKKFVDVYSPSSSPSTPMGRAGGNERGAGGGGK
KKFFNRNASAPDLSTQTKSKGASSTRSRSSKMHSSPRPPSHQPSSSSASI
STESTTPENLTPDPQHYAMPTAAAATGAAPTISTKTATGWGQPSSAETKL
EEDGLPHLVSIMWKLAAYDIGETVGRACGKALSDTSVSKEERRQRAKGLA
ALGKAFKEAADRVLASAGGAVNYRKEWEALDREFMHRYESSTSIHTMASS
GSTSSFPQQQQQQQQQQQQVATHHQESFSQEAAQGGDEDKEEEEDEEEGG
IVL*
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mRNA from alignment at chr24:636367..638323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02340.1 ID=NO24G02340.1|Name=NO24G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at chr24:636367..638323- (Nannochloropsis oceanica)
ATGCAGGTAAGAAAGGGAAGGAGGGAATGATAGAGGGAGGGAAGGAAAGA
TGAGGTGGTGAGACAGAATATTCCGTCAAAGTAAAATCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCGCCAAG
CCGAGGTGGCAGGGGCGACACTGCAGGGCCTTAAGCTGGGGAAGAAATTT
GTGGATGTCTACTCGCCCTCCTCCTCTCCCTCGACCCCGATGGGAAGAGC
AGGAGGAAACGAAAGAGGAGCAGGAGGAGGAGGGAAGAAAAAATTCTTTG
TGAGTGTGGAAAGGGGAGAGAGTGGTGGAGGGAGGAAGGGAGGGAGATAG
AAAGAGGGGAAGGGAGGGAGAGAGATAGATTATCCAAATCATTCTTGTTT
GATTCCCTCCTTAGCATGACCTCCTACACACGTGACCCCAGTACCACCAA
CCCTCTCACCACCAATACCAATGCCATCAATACTGACTGCAATGCTGACA
CCAATCGTCACCAGCAATACCAACTGCAATACCATCAACCTTCACATCCA
CCCTAACAAACGCCAACATGATTCTACCACGCAGAATCGCAACGCCTCCG
CCCCCGACCTCTCCACTCAAACCAAATCCAAGGGAGCCAGCAGCACCCGC
AGCCGCAGCAGCAAGATGCACTCTTCTCCTCGCCCGCCCTCCCACCAGCC
CTCCTCCTCCTCTGCCTCCATCTCCACGGAGTCGACCACTCCCGAGAATC
TAACCCCCGACCCGCAGCATTATGCAATGCCAACAGCAGCAGCAGCTACA
GGAGCCGCACCAACAATATCAACCAAAACGGCAACGGGCTGGGGGCAGGT
GGGGAGGCTGAGAGGGGAGGAAGGGAGAGAGGGAGGGAGAGAGAGAGGGA
GGGGAGGAAGAATAGATAGATTATATATATAGATAGATATCCGAAAGAGA
CACGAAAACTTGAATGGCATAAAAACAAGAGGCTGTCCATCCATTCTCAT
ACCATACATGCTCCCTTCCCCTCCCCTCCCCACTCTCTCGCTCGCTCTCT
CCCTTGCGTGCTCTCCTGCCCTCCCTCCAGCCCTCGTCTGCCGAGACGAA
GTTGGAAGAGGATGGATTGCCGCACCTGGTGTCCATCATGTGGAAACTCG
CCGCCTACGACATTGGCGAAACCGTGGGGAGGGCTTGTGGGAAGGTAGGA
GGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGTGGGGGAAGCCGTGCAGT
TTCGTCCATGCTGACGCTCATTGGAATGACCAAATGATTTATAACAGGCT
TTGAGCGACACCAGTGTGAGCAAAGAAGAACGACGACAGCGAGCGAAAGG
TGCGTGTGAACATCAAGATAAACATAGGAATTCTACCCACTTTCCTCCCT
CGACTCACACCCCTGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGC
CTGGCTGCCCTGGGGAAAGCATTCAAAGAGGCCGCGGATCGTGTCCTGGC
ATCGGCGGGTGGTGCGGTGAATTACCGGAAGGAGTGGGAGGCATTGGACA
GGGAGTTTATGCATAGGTAGGTAGAGGGGAGGGAGGGAGGTAGGGAGAGA
GGGAGAGGAAGGGAGGGAGCGAAGGAGTCGAGATGAAATGCTTGTTGATA
AGGGATCTAGTCCTTTGCTGCTTAATTTCTTATCGAAACCTCAAATTCTC
CCTCTTTTCCTCCCTCCCTCCCTCTGTCACTCCCTCCCTCCATCACTTCC
GCCAGATACGAATCCTCGACGTCCATTCACACAATGGCTTCATCGGGCTC
GACCTCTTCATTCCCTCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGC
AGGTGGCCACCCACCATCAAGAGTCATTCAGCCAGGAGGCTGCACAAGGA
GGAGACGAGGACAAAGAGGAAGAGGAGGACGAGGAGGAAGGGGGAATTGT
ACTTTAA
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Coding sequence (CDS) from alignment at chr24:636367..638323-

>NO24G02340.1 ID=NO24G02340.1|Name=NO24G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr24:636367..638323- (Nannochloropsis oceanica)
ATGCAGCGCCAAGCCGAGGTGGCAGGGGCGACACTGCAGGGCCTTAAGCT
GGGGAAGAAATTTGTGGATGTCTACTCGCCCTCCTCCTCTCCCTCGACCC
CGATGGGAAGAGCAGGAGGAAACGAAAGAGGAGCAGGAGGAGGAGGGAAG
AAAAAATTCTTTAATCGCAACGCCTCCGCCCCCGACCTCTCCACTCAAAC
CAAATCCAAGGGAGCCAGCAGCACCCGCAGCCGCAGCAGCAAGATGCACT
CTTCTCCTCGCCCGCCCTCCCACCAGCCCTCCTCCTCCTCTGCCTCCATC
TCCACGGAGTCGACCACTCCCGAGAATCTAACCCCCGACCCGCAGCATTA
TGCAATGCCAACAGCAGCAGCAGCTACAGGAGCCGCACCAACAATATCAA
CCAAAACGGCAACGGGCTGGGGGCAGCCCTCGTCTGCCGAGACGAAGTTG
GAAGAGGATGGATTGCCGCACCTGGTGTCCATCATGTGGAAACTCGCCGC
CTACGACATTGGCGAAACCGTGGGGAGGGCTTGTGGGAAGGCTTTGAGCG
ACACCAGTGTGAGCAAAGAAGAACGACGACAGCGAGCGAAAGGCCTGGCT
GCCCTGGGGAAAGCATTCAAAGAGGCCGCGGATCGTGTCCTGGCATCGGC
GGGTGGTGCGGTGAATTACCGGAAGGAGTGGGAGGCATTGGACAGGGAGT
TTATGCATAGATACGAATCCTCGACGTCCATTCACACAATGGCTTCATCG
GGCTCGACCTCTTCATTCCCTCAGCAGCAACAGCAACAGCAGCAGCAGCA
GCAGCAGGTGGCCACCCACCATCAAGAGTCATTCAGCCAGGAGGCTGCAC
AAGGAGGAGACGAGGACAAAGAGGAAGAGGAGGACGAGGAGGAAGGGGGA
ATTGTACTTTAA
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Synonyms
Publications