NO24G02330, NO24G02330 (gene) Nannochloropsis oceanica

Overview
NameNO24G02330
Unique NameNO24G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2335
Alignment locationchr24:633587..635921 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:633587..635921 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02330 vs. NCBI_GenBank
Match: XP_005855101.1 (hypothetical protein NGA_0399200 [Nannochloropsis gaditana CCMP526] >EKU21257.1 hypothetical protein NGA_0399200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.0 bits (528), Expect = 4.900e-50
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = 0 
Query:  218 SKPKRWPCMAAQKWTFRATIRCERTGKWALLWESDTATTFYTEQPDESWQLYLPQGSLSVLSNWHSLYTTHASMLNVEAGATFYVQPTLLRGDEEGEKDDREKEWEFATVKKEECGEYAVSFVGLSFKAPDIYFLGQFIRSLLD 362
            SKP R P +AA KW  RA++RC RTG+WALLWES   TTFYTE+PDE+W+  LPQGSLSVLS+WH +YTTHAS+LNVEAG TFYV+P       +GE ++RE+EW  ATV+KE C ++ VSFVGLSFKAPD+YFLGQF+RSLLD
Sbjct:   52 SKPTRLPALAALKWVIRASVRCVRTGRWALLWESAEDTTFYTEEPDENWRASLPQGSLSVLSSWHPVYTTHASLLNVEAGVTFYVKP-------KGEGEEREREWAIATVEKESCEDHTVSFVGLSFKAPDVYFLGQFVRSLLD 188
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BLAST of NO24G02330 vs. NCBI_GenBank
Match: EWM24444.1 (hypothetical protein Naga_100820g4 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 4.200e-25
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 0 
Query:    1 MVSRKALGECALVARGWKDVXXXXXXXXXXCKGAMPLLLMDRAEEKEGGAGLGNMTHLPKHEVLRRHGVAVAGGGRRLLRGHWADEMSVCFEVFEKETGRRLYTGVGPVNLYSREDPEDP 121
            + SRK+LG   LV R W+ V          C+  +PLL     EE  G  G  +M    + E++R+HG+A+AG GRRLL G W DE+ VCFE+FEKE+GRRLY G+G +NL+ REDPEDP
Sbjct:  143 LTSRKSLGVLGLVCRSWQAVAWRDALWEEICRETLPLL---EVEEGGGADGGKHMPQWSRREMMRKHGMALAGPGRRLLSGQWVDEVFVCFEIFEKESGRRLYVGLGAINLFQREDPEDP 259
The following BLAST results are available for this feature:
BLAST of NO24G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855101.14.900e-5067.36hypothetical protein NGA_0399200 [Nannochloropsis ... [more]
EWM24444.14.200e-2549.17hypothetical protein Naga_100820g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02330.1NO24G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|350549gene_10378Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100820g4gene6033Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02330.1NO24G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02330 ID=NO24G02330|Name=NO24G02330|organism=Nannochloropsis oceanica|type=gene|length=2335bp
GTTATAATGCCATTACTAAAGCGTTTTCTTATTTTCGCTTTTCAGTCGGT
GCGTTGCAATGTGGGACAGGATAGGTAGTGGCCGTCGTGCTTCTACTTCA
TTACCGTCGTGGTGGTGAGCGTGGCGTGTTCGTGCGATTGTAAGTTATGA
TGCTTTGTACTCGAGGCGGCGTGATGGTGACGAAGCAGCACGTTGCTGAT
CTCGCCGCGATTGTGGATTAATTTTAAGCCTTCCTCCCAAGTTCAAACTT
CACTGACTCAAAGTACAATTCACAGTCATAATCAGCAACAGCAGCAGCAG
TATCGTCTTGACAGCGACGGCCGTCGGCGCTGACTTCCCTATCAGCAATG
GACGACCCTACGCATTCAGCAACCTCCTCCTCCCCTACCCTCACTCCTGC
CGCCCTCCATGCCTGCCGAGACGTCCTCCAGCTCCTCCGCTCCGCCTCGT
CCCTCACCAACGAGTTCACCGATTCTCTCTCCCTCTATCTGAAAGACCGG
GAAGCCTCCGACCCCGAAATCTTGACCCTCCGCTCCCTCCAACGCACCCT
CGCTCTCCTCCTCCCCCCCTTCCTGCCCCCTTTCTCCACCCACTGCCGAA
GAAGAAGCGTCTCGCTCACCCGTAGACAGGGTATTGCAAGACCCTGATCT
CCTCGCGTTGATTCTTGCACGATTGGTGGAGGGAAAGAAAGCCAGCATGG
TCTCTCGCAAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCTGGAAG
GACGTGGCCTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGGGCGAT
GCCGCTCTTGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGCGGGCC
TGGGGAATATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGACATGGG
GTGGCGGTGGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGGGCTGA
CGAGATGAGCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACGCAGGC
TGTACACGGGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACCCAGAG
GACCCGgtgaggaaaagttggggggagggagggagggagggagggagggg
gggagggagggagggagagggagggagggagtaagagaggggatacctat
gcacacactgcacatctcgtttgtgaaacgatcacccgcacgctcagccc
ccagtcaatgaatacaaccacccttttttcttccccataaaccataactc
ccctccccgccccctccttccgcccatccagGACGGCGACATGAACATCG
ACCTGCACGTCTGGAGCGGCCAGAGCAAGGAGTGCATCGGCGGTTCCTTC
TCTGTAGCTCAGTACGACGACTATAATCCGGAGGGGGGGGGGCACGCAGG
AGGgtgggagggagaacgcggggaaaaaatcggggcagaaagccgctgaa
aaatatcaaggaattttttacgaagcgacccaaaatcaagcatgaagcgg
gagaaagggagggaggaggaggaggggggggggttaggatacagtcagga
tgacttggcctcatacgcaagcttcgaagACGAGGACGAGGACATGGGGC
AGGGAGAGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAGCAGCAGTG
ACGACAGCAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGGACGAG
GGCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTCTCTTC
CAAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTTTCGCG
CCACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGGAGAGT
GACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGGCAGTT
GTATTTGCCCCAAGGAAGCCTGAgtgagttcctcaagccgcctcttcttc
cctccctccctccctccctctctcccttttctgcgttcaccgtctttgga
tgcacaaaaatcgatttctccgtcactcacccccttccaccctccctctc
tgcatccttcccttgtgcccctcagGTGTCTTGTCCAACTGGCACTCTCT
CTATACCACCCATGCCTCCATGCTCAACGTCGAGGCCGGTGCGACCTTCT
ACGTCCAGCCCACGCTCCTGCGTGGGGACGAGGAGGGCGAGAAGGACGAC
AGGGAGAAGGAGTGGGAGTTTGCAACGGTGAAGAAGGAGGAGTGTGGAGA
GTACGCGGTCTCTTTTGTGGGGCTCAGCTTCAAGGCGCCTGATATTTACT
TCCTCGGTCAGTTTATTCGGAGTTTGCTGGACTAG
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protein sequence of NO24G02330.1

>NO24G02330.1-protein ID=NO24G02330.1-protein|Name=NO24G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MVSRKALGECALVARGWKDVAWRDVFWADICKGAMPLLLMDRAEEKEGGA
GLGNMTHLPKHEVLRRHGVAVAGGGRRLLRGHWADEMSVCFEVFEKETGR
RLYTGVGPVNLYSREDPEDPDGDMNIDLHVWSGQSKECIGGSFSVAQYDD
YNPEGGGHAGGRGRGHGAGRGGGSGSSRSSGSSSDDSSSDEDSAAYDDED
EGELEENIPPGMAANVSSKPKRWPCMAAQKWTFRATIRCERTGKWALLWE
SDTATTFYTEQPDESWQLYLPQGSLSVLSNWHSLYTTHASMLNVEAGATF
YVQPTLLRGDEEGEKDDREKEWEFATVKKEECGEYAVSFVGLSFKAPDIY
FLGQFIRSLLD*
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Synonyms
Publications