NO24G02330.1, NO24G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02330.1
Unique NameNO24G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1782
Alignment locationchr24:633587..635921 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:633587..635921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02330.1 vs.
Match: XP_005855101.1 (hypothetical protein NGA_0399200 [Nannochloropsis gaditana CCMP526]; EKU21257.1 hypothetical protein NGA_0399200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.6 bits (553), Expect = 6.200e-53
Identity = 108/177 (61.02%), Postives = 135/177 (76.27%), Query Frame = 0 
Query:  185 DDSSSDEDSAAYDDEDEGELEENIPPGMAANVSSKPKRWPCMAAQKWTFRATIRCERTGKWALLWESDTATTFYTEQPDESWQLYLPQGSLSVLSNWHSLYTTHASMLNVEAGATFYVQPTLLRGDEEGEKDDREKEWEFATVKKEECGEYAVSFVGLSFKAPDIYFLGQFIRSLLD 362
            +D   DE+    D+E+E E EE++ PG+     SKP R P +AA KW  RA++RC RTG+WALLWES   TTFYTE+PDE+W+  LPQGSLSVLS+WH +YTTHAS+LNVEAG TFYV+P       +GE ++RE+EW  ATV+KE C ++ VSFVGLSFKAPD+YFLGQF+RSLLD
Sbjct:   22 EDDDDDEEEEDEDEEEEEEEEESMHPGITV---SKPTRLPALAALKWVIRASVRCVRTGRWALLWESAEDTTFYTEEPDENWRASLPQGSLSVLSSWHPVYTTHASLLNVEAGVTFYVKP-------KGEGEEREREWAIATVEKESCEDHTVSFVGLSFKAPDVYFLGQFVRSLLD 188
The following BLAST results are available for this feature:
BLAST of NO24G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855101.16.200e-5361.02hypothetical protein NGA_0399200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02330NO24G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02330.1NO24G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02330.1.cds1NO24G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02330.1.cds2NO24G02330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02330.1.cds3NO24G02330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02330.1.cds4NO24G02330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02330.1 ID=NO24G02330.1|Name=NO24G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp
GTTATAATGCCATTACTAAAGCGTTTTCTTATTTTCGCTTTTCAGTCGGT
GCGTTGCAATGTGGGACAGGATAGGTAGTGGCCGTCGTGCTTCTACTTCA
TTACCGTCGTGGTGGTGAGCGTGGCGTGTTCGTGCGATTGTAAGTTATGA
TGCTTTGTACTCGAGGCGGCGTGATGGTGACGAAGCAGCACGTTGCTGAT
CTCGCCGCGATTGTGGATTAATTTTAAGCCTTCCTCCCAAGTTCAAACTT
CACTGACTCAAAGTACAATTCACAGTCATAATCAGCAACAGCAGCAGCAG
TATCGTCTTGACAGCGACGGCCGTCGGCGCTGACTTCCCTATCAGCAATG
GACGACCCTACGCATTCAGCAACCTCCTCCTCCCCTACCCTCACTCCTGC
CGCCCTCCATGCCTGCCGAGACGTCCTCCAGCTCCTCCGCTCCGCCTCGT
CCCTCACCAACGAGTTCACCGATTCTCTCTCCCTCTATCTGAAAGACCGG
GAAGCCTCCGACCCCGAAATCTTGACCCTCCGCTCCCTCCAACGCACCCT
CGCTCTCCTCCTCCCCCCCTTCCTGCCCCCTTTCTCCACCCACTGCCGAA
GAAGAAGCGTCTCGCTCACCCGTAGACAGGGTATTGCAAGACCCTGATCT
CCTCGCGTTGATTCTTGCACGATTGGTGGAGGGAAAGAAAGCCAGCATGG
TCTCTCGCAAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCTGGAAG
GACGTGGCCTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGGGCGAT
GCCGCTCTTGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGCGGGCC
TGGGGAATATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGACATGGG
GTGGCGGTGGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGGGCTGA
CGAGATGAGCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACGCAGGC
TGTACACGGGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACCCAGAG
GACCCGGACGGCGACATGAACATCGACCTGCACGTCTGGAGCGGCCAGAG
CAAGGAGTGCATCGGCGGTTCCTTCTCTGTAGCTCAGTACGACGACTATA
ATCCGGAGGGGGGGGGGCACGCAGGAGGACGAGGACGAGGACATGGGGCA
GGGAGAGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAGCAGCAGTGA
CGACAGCAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGGACGAGG
GCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTCTCTTCC
AAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTTTCGCGC
CACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGGAGAGTG
ACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGGCAGTTG
TATTTGCCCCAAGGAAGCCTGAGTGTCTTGTCCAACTGGCACTCTCTCTA
TACCACCCATGCCTCCATGCTCAACGTCGAGGCCGGTGCGACCTTCTACG
TCCAGCCCACGCTCCTGCGTGGGGACGAGGAGGGCGAGAAGGACGACAGG
GAGAAGGAGTGGGAGTTTGCAACGGTGAAGAAGGAGGAGTGTGGAGAGTA
CGCGGTCTCTTTTGTGGGGCTCAGCTTCAAGGCGCCTGATATTTACTTCC
TCGGTCAGTTTATTCGGAGTTTGCTGGACTAG
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protein sequence of NO24G02330.1

>NO24G02330.1-protein ID=NO24G02330.1-protein|Name=NO24G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MVSRKALGECALVARGWKDVAWRDVFWADICKGAMPLLLMDRAEEKEGGA
GLGNMTHLPKHEVLRRHGVAVAGGGRRLLRGHWADEMSVCFEVFEKETGR
RLYTGVGPVNLYSREDPEDPDGDMNIDLHVWSGQSKECIGGSFSVAQYDD
YNPEGGGHAGGRGRGHGAGRGGGSGSSRSSGSSSDDSSSDEDSAAYDDED
EGELEENIPPGMAANVSSKPKRWPCMAAQKWTFRATIRCERTGKWALLWE
SDTATTFYTEQPDESWQLYLPQGSLSVLSNWHSLYTTHASMLNVEAGATF
YVQPTLLRGDEEGEKDDREKEWEFATVKKEECGEYAVSFVGLSFKAPDIY
FLGQFIRSLLD*
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mRNA from alignment at chr24:633587..635921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02330.1 ID=NO24G02330.1|Name=NO24G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp|location=Sequence derived from alignment at chr24:633587..635921+ (Nannochloropsis oceanica)
GTTATAATGCCATTACTAAAGCGTTTTCTTATTTTCGCTTTTCAGTCGGT
GCGTTGCAATGTGGGACAGGATAGGTAGTGGCCGTCGTGCTTCTACTTCA
TTACCGTCGTGGTGGTGAGCGTGGCGTGTTCGTGCGATTGTAAGTTATGA
TGCTTTGTACTCGAGGCGGCGTGATGGTGACGAAGCAGCACGTTGCTGAT
CTCGCCGCGATTGTGGATTAATTTTAAGCCTTCCTCCCAAGTTCAAACTT
CACTGACTCAAAGTACAATTCACAGTCATAATCAGCAACAGCAGCAGCAG
TATCGTCTTGACAGCGACGGCCGTCGGCGCTGACTTCCCTATCAGCAATG
GACGACCCTACGCATTCAGCAACCTCCTCCTCCCCTACCCTCACTCCTGC
CGCCCTCCATGCCTGCCGAGACGTCCTCCAGCTCCTCCGCTCCGCCTCGT
CCCTCACCAACGAGTTCACCGATTCTCTCTCCCTCTATCTGAAAGACCGG
GAAGCCTCCGACCCCGAAATCTTGACCCTCCGCTCCCTCCAACGCACCCT
CGCTCTCCTCCTCCCCCCCTTCCTGCCCCCTTTCTCCACCCACTGCCGAA
GAAGAAGCGTCTCGCTCACCCGTAGACAGGGTATTGCAAGACCCTGATCT
CCTCGCGTTGATTCTTGCACGATTGGTGGAGGGAAAGAAAGCCAGCATGG
TCTCTCGCAAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCTGGAAG
GACGTGGCCTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGGGCGAT
GCCGCTCTTGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGCGGGCC
TGGGGAATATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGACATGGG
GTGGCGGTGGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGGGCTGA
CGAGATGAGCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACGCAGGC
TGTACACGGGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACCCAGAG
GACCCGGTGAGGAAAAGTTGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGG
GGGAGGGAGGGAGGGAGAGGGAGGGAGGGAGTAAGAGAGGGGATACCTAT
GCACACACTGCACATCTCGTTTGTGAAACGATCACCCGCACGCTCAGCCC
CCAGTCAATGAATACAACCACCCTTTTTTCTTCCCCATAAACCATAACTC
CCCTCCCCGCCCCCTCCTTCCGCCCATCCAGGACGGCGACATGAACATCG
ACCTGCACGTCTGGAGCGGCCAGAGCAAGGAGTGCATCGGCGGTTCCTTC
TCTGTAGCTCAGTACGACGACTATAATCCGGAGGGGGGGGGGCACGCAGG
AGGGTGGGAGGGAGAACGCGGGGAAAAAATCGGGGCAGAAAGCCGCTGAA
AAATATCAAGGAATTTTTTACGAAGCGACCCAAAATCAAGCATGAAGCGG
GAGAAAGGGAGGGAGGAGGAGGAGGGGGGGGGGTTAGGATACAGTCAGGA
TGACTTGGCCTCATACGCAAGCTTCGAAGACGAGGACGAGGACATGGGGC
AGGGAGAGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAGCAGCAGTG
ACGACAGCAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGGACGAG
GGCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTCTCTTC
CAAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTTTCGCG
CCACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGGAGAGT
GACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGGCAGTT
GTATTTGCCCCAAGGAAGCCTGAGTGAGTTCCTCAAGCCGCCTCTTCTTC
CCTCCCTCCCTCCCTCCCTCTCTCCCTTTTCTGCGTTCACCGTCTTTGGA
TGCACAAAAATCGATTTCTCCGTCACTCACCCCCTTCCACCCTCCCTCTC
TGCATCCTTCCCTTGTGCCCCTCAGGTGTCTTGTCCAACTGGCACTCTCT
CTATACCACCCATGCCTCCATGCTCAACGTCGAGGCCGGTGCGACCTTCT
ACGTCCAGCCCACGCTCCTGCGTGGGGACGAGGAGGGCGAGAAGGACGAC
AGGGAGAAGGAGTGGGAGTTTGCAACGGTGAAGAAGGAGGAGTGTGGAGA
GTACGCGGTCTCTTTTGTGGGGCTCAGCTTCAAGGCGCCTGATATTTACT
TCCTCGGTCAGTTTATTCGGAGTTTGCTGGACTAG
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Coding sequence (CDS) from alignment at chr24:633587..635921+

>NO24G02330.1 ID=NO24G02330.1|Name=NO24G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr24:633587..635921+ (Nannochloropsis oceanica)
ATGGTCTCTCGCAAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCTG
GAAGGACGTGGCCTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGGG
CGATGCCGCTCTTGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGCG
GGCCTGGGGAATATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGACA
TGGGGTGGCGGTGGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGGG
CTGACGAGATGAGCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACGC
AGGCTGTACACGGGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACCC
AGAGGACCCGGACGGCGACATGAACATCGACCTGCACGTCTGGAGCGGCC
AGAGCAAGGAGTGCATCGGCGGTTCCTTCTCTGTAGCTCAGTACGACGAC
TATAATCCGGAGGGGGGGGGGCACGCAGGAGGACGAGGACGAGGACATGG
GGCAGGGAGAGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAGCAGCA
GTGACGACAGCAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGGAC
GAGGGCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTCTC
TTCCAAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTTTC
GCGCCACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGGAG
AGTGACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGGCA
GTTGTATTTGCCCCAAGGAAGCCTGAGTGTCTTGTCCAACTGGCACTCTC
TCTATACCACCCATGCCTCCATGCTCAACGTCGAGGCCGGTGCGACCTTC
TACGTCCAGCCCACGCTCCTGCGTGGGGACGAGGAGGGCGAGAAGGACGA
CAGGGAGAAGGAGTGGGAGTTTGCAACGGTGAAGAAGGAGGAGTGTGGAG
AGTACGCGGTCTCTTTTGTGGGGCTCAGCTTCAAGGCGCCTGATATTTAC
TTCCTCGGTCAGTTTATTCGGAGTTTGCTGGACTAG
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Synonyms
Publications