NO24G02320, NO24G02320 (gene) Nannochloropsis oceanica

Overview
NameNO24G02320
Unique NameNO24G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1900
Alignment locationchr24:631655..633554 -

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock protein DnaJ
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:631655..633554 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02320 vs. NCBI_GenBank
Match: EWM24446.1 (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 4.500e-48
Identity = 96/118 (81.36%), Postives = 107/118 (90.68%), Query Frame = 0 
Query:   52 LDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRELYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKLHRFYHEKADEHTWQGFSAE 170
            +  RSGM+ FG V+LAVAGNVLVARRYG+RVMSWAVP +NKH+++ KRE+YKEYWDP  KRARWE+YFSAAAEEERQQAER+YAWMMEERERE LREKLHRFYHEK DE TWQGFSAE
Sbjct:    1 MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAE 118
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BLAST of NO24G02320 vs. NCBI_GenBank
Match: XP_005855104.1 (hypothetical protein NGA_0399500 [Nannochloropsis gaditana CCMP526] >EKU21260.1 hypothetical protein NGA_0399500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 103.2 bits (256), Expect = 9.700e-19
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 0 
Query:   83 MSWAVPKQNKHNAYAKRELYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKLHRFYHEKADEHTWQGFSAE 170
            MSWAVP +NKH+++ KRE+YKEYWDP  KRARWE+YFSAAAEEERQQAER+YAWM                         WQGFSAE
Sbjct:    1 MSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWM-------------------------WQGFSAE 62
The following BLAST results are available for this feature:
BLAST of NO24G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24446.14.500e-4881.36Heat shock protein DnaJ [Nannochloropsis gaditana][more]
XP_005855104.19.700e-1958.62hypothetical protein NGA_0399500 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02320.2NO24G02320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G02320.1NO24G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611252gene_10377Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100820g3gene6034Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02320.2NO24G02320.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G02320.1NO24G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02320 ID=NO24G02320|Name=NO24G02320|organism=Nannochloropsis oceanica|type=gene|length=1900bp
AGAGTCGACGCCGCAGCCCAGACATGCCACCACCGATCGCAACTGCAGCA
CCGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCC
TCCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTC
CTCCTTCCGAGGCAGCAACCCACGTGTTAGATGCCCGCAGgcaagcgaaa
gaacataggaggaagggaaggggagatagggatcggagaataatggagag
aaacaatttaataggcagtgacagcttttattttccatccatgcactcac
accctccttcacatctcctttctccatccctctcctttcctcagCGGGAT
GATGTTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCG
CCCGTAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAAC
AAACATAATGCCTATGCCAAAAGAGAGCTGTACAAAGgtaagtgtgtttc
acccctctctacttccctccctccttccccaccccctctgtgccggcctc
ccagggaaagcaggtcttttgtttgttcaagagcgagagaattgcataca
aaaagacgtactagagaaaagcaggtgtgcataagaacatgctgccgatt
gacagttgtgcaaccctttcctgcttccctccctccttcagcttataggg
ggtatttagtaacattcccctccctccctccctctctttttcactagAGT
ACTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCG
GCGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCTACGCATGGATgta
ggggagggaagggagggaaggaaggaaggaagaagggagggggaacgtcc
ccataaatggaacttacctttttctccctctttctcattttaaacctcct
gcttccctcctttcctcagGATGGAGGAACGCGAGAGAGAGGAGCTGCGG
GAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGACGAGCACACgtaaat
ccctttcccttcctccctctctccttccttccttccctccctccctccct
cccttccttccttcctccctccctccctccctccctccccctctcccttc
ttcactctttccctcctttgtcaagctctttcgatttacattccttccta
tgcatcctctcttgccttccctccttctctccctccctccctccctcctt
tctttcctcctcctagATGGCAAGGTTTCTCGGCTGAGGATTTCTTTGGA
GGCGAAGAGCATCGAAGGGGCTGGCAAAGACGACGGGGGGGGAAGGGgta
aggagtgggggagggggcaagaaaaggggagatgagagaagaagggaggg
agggagggagggagggagggagggaggaagcactaacccccccgctttgg
atcctcccttgggatctttgtttctttttcgctcacctcccccccccatc
cctctttccagCCCTCCTTCCCTCCTTCCTCCTCCTCCGAAAAGCGCGCC
AAGGCCTTGAGGGTGCTCGGTCTCTCGCCGCGCCCGGAGGAGGCGGACGT
GAAGGAGGAAGAGCTGAAGGAAGCTTTCAGGAGAAAGGCCATGGAATGCC
ACCCGGACAGGTGAGGAGGGAGGAAGGGGGAGGAGGGTCTCTAAGTTGTC
GCCCGTCGAATTTACGTAGATTTTTGTCATCGTCTTCCCTCCTTCCCTCC
TTCCCTCTCTCCCTCTATTTTCTAGAGCGCCCCCGGAGGAGCGCGTGAAG
AGCAGCCAGAAGTTCAAGGAGGTGAATAGCGCCTTCACGCTCTTGATGGA
GACTGCGGTGCTTGCAAGGAGGAGGGAGGAGGAGGAAGATTGGTAGGGGG
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protein sequence of NO24G02320.2

>NO24G02320.2-protein ID=NO24G02320.2-protein|Name=NO24G02320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPPPIATAAPAPPPPSRYPSTARGPPPPFPSLPDKEIYEHMLPPSEAATH
VLDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRE
LYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKL
HRFYHEKADEHTWQGFSAEDFFGGEEHRRGWQRRRGGKGPPSLLPPPPKS
APRP*
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protein sequence of NO24G02320.1

>NO24G02320.1-protein ID=NO24G02320.1-protein|Name=NO24G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPPPIATAAPAPPPPSRYPSTARGPPPPFPSLPDKEIYEHMLPPSEAATH
VLDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRE
LYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKL
HRFYHEKADEHTWQGFSAEDFFGGEEHRRGWQRRRGGKGPPSLLPPPPKS
APRP*
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Synonyms
Publications