NO24G02320.1, NO24G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02320.1
Unique NameNO24G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length863
Alignment locationchr24:631655..633554 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:631655..633554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02320.1 vs.
Match: EWM24446.1 (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 220.7 bits (561), Expect = 4.200e-54
Identity = 114/155 (73.55%), Postives = 129/155 (83.23%), Query Frame = 0 
Query:   52 LDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRELYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKLHRFYHEKADEHTWQGFSAEDFFG---GEEHRRGWQRRRGGKGPPSLLPPPPKSAPR 204
            +  RSGM+ FG V+LAVAGNVLVARRYG+RVMSWAVP +NKH+++ KRE+YKEYWDP  KRARWE+YFSAAAEEERQQAER+YAWMMEERERE LREKLHRFYHEK DE TWQGFSAEDFFG   GEE R+G++RR G + PP   PP   S  R
Sbjct:    1 MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPP---PPSTFSQQR 152
The following BLAST results are available for this feature:
BLAST of NO24G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24446.14.200e-5473.55Heat shock protein DnaJ [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02320NO24G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02320.1NO24G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02320.1.cds1NO24G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02320.1.cds2NO24G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02320.1.cds3NO24G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02320.1.cds4NO24G02320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02320.1.cds5NO24G02320.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02320.1.cds6NO24G02320.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02320.1 ID=NO24G02320.1|Name=NO24G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
AGAGTCGACGCCGCAGCCCAGACATGCCACCACCGATCGCAACTGCAGCA
CCGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCC
TCCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTC
CTCCTTCCGAGGCAGCAACCCACGTGTTAGATGCCCGCAGCGGGATGATG
TTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCGCCCG
TAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAACAAAC
ATAATGCCTATGCCAAAAGAGAGCTGTACAAAGAGTACTGGGATCCAGTC
CTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCGGCGGCGGAGGAAGA
GCGACAACAAGCAGAGAGGCTCTACGCATGGATGATGGAGGAACGCGAGA
GAGAGGAGCTGCGGGAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGAC
GAGCACACATGGCAAGGTTTCTCGGCTGAGGATTTCTTTGGAGGCGAAGA
GCATCGAAGGGGCTGGCAAAGACGACGGGGGGGGAAGGGCCCTCCTTCCC
TCCTTCCTCCTCCTCCGAAAAGCGCGCCAAGGCCTTGAGGGTGCTCGGTC
TCTCGCCGCGCCCGGAGGAGGCGGACGTGAAGGAGGAAGAGCTGAAGGAA
GCTTTCAGGAGAAAGGCCATGGAATGCCACCCGGACAGAGCGCCCCCGGA
GGAGCGCGTGAAGAGCAGCCAGAAGTTCAAGGAGGTGAATAGCGCCTTCA
CGCTCTTGATGGAGACTGCGGTGCTTGCAAGGAGGAGGGAGGAGGAGGAA
GATTGGTAGGGGG
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protein sequence of NO24G02320.1

>NO24G02320.1-protein ID=NO24G02320.1-protein|Name=NO24G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPPPIATAAPAPPPPSRYPSTARGPPPPFPSLPDKEIYEHMLPPSEAATH
VLDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRE
LYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKL
HRFYHEKADEHTWQGFSAEDFFGGEEHRRGWQRRRGGKGPPSLLPPPPKS
APRP*
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mRNA from alignment at chr24:631655..633554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02320.1 ID=NO24G02320.1|Name=NO24G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp|location=Sequence derived from alignment at chr24:631655..633554- (Nannochloropsis oceanica)
AGAGTCGACGCCGCAGCCCAGACATGCCACCACCGATCGCAACTGCAGCA
CCGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCC
TCCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTC
CTCCTTCCGAGGCAGCAACCCACGTGTTAGATGCCCGCAGGCAAGCGAAA
GAACATAGGAGGAAGGGAAGGGGAGATAGGGATCGGAGAATAATGGAGAG
AAACAATTTAATAGGCAGTGACAGCTTTTATTTTCCATCCATGCACTCAC
ACCCTCCTTCACATCTCCTTTCTCCATCCCTCTCCTTTCCTCAGCGGGAT
GATGTTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCG
CCCGTAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAAC
AAACATAATGCCTATGCCAAAAGAGAGCTGTACAAAGGTAAGTGTGTTTC
ACCCCTCTCTACTTCCCTCCCTCCTTCCCCACCCCCTCTGTGCCGGCCTC
CCAGGGAAAGCAGGTCTTTTGTTTGTTCAAGAGCGAGAGAATTGCATACA
AAAAGACGTACTAGAGAAAAGCAGGTGTGCATAAGAACATGCTGCCGATT
GACAGTTGTGCAACCCTTTCCTGCTTCCCTCCCTCCTTCAGCTTATAGGG
GGTATTTAGTAACATTCCCCTCCCTCCCTCCCTCTCTTTTTCACTAGAGT
ACTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCG
GCGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCTACGCATGGATGTA
GGGGAGGGAAGGGAGGGAAGGAAGGAAGGAAGAAGGGAGGGGGAACGTCC
CCATAAATGGAACTTACCTTTTTCTCCCTCTTTCTCATTTTAAACCTCCT
GCTTCCCTCCTTTCCTCAGGATGGAGGAACGCGAGAGAGAGGAGCTGCGG
GAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGACGAGCACACGTAAAT
CCCTTTCCCTTCCTCCCTCTCTCCTTCCTTCCTTCCCTCCCTCCCTCCCT
CCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCTTC
TTCACTCTTTCCCTCCTTTGTCAAGCTCTTTCGATTTACATTCCTTCCTA
TGCATCCTCTCTTGCCTTCCCTCCTTCTCTCCCTCCCTCCCTCCCTCCTT
TCTTTCCTCCTCCTAGATGGCAAGGTTTCTCGGCTGAGGATTTCTTTGGA
GGCGAAGAGCATCGAAGGGGCTGGCAAAGACGACGGGGGGGGAAGGGGTA
AGGAGTGGGGGAGGGGGCAAGAAAAGGGGAGATGAGAGAAGAAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGAAGCACTAACCCCCCCGCTTTGG
ATCCTCCCTTGGGATCTTTGTTTCTTTTTCGCTCACCTCCCCCCCCCATC
CCTCTTTCCAGCCCTCCTTCCCTCCTTCCTCCTCCTCCGAAAAGCGCGCC
AAGGCCTTGAGGGTGCTCGGTCTCTCGCCGCGCCCGGAGGAGGCGGACGT
GAAGGAGGAAGAGCTGAAGGAAGCTTTCAGGAGAAAGGCCATGGAATGCC
ACCCGGACAGGTGAGGAGGGAGGAAGGGGGAGGAGGGTCTCTAAGTTGTC
GCCCGTCGAATTTACGTAGATTTTTGTCATCGTCTTCCCTCCTTCCCTCC
TTCCCTCTCTCCCTCTATTTTCTAGAGCGCCCCCGGAGGAGCGCGTGAAG
AGCAGCCAGAAGTTCAAGGAGGTGAATAGCGCCTTCACGCTCTTGATGGA
GACTGCGGTGCTTGCAAGGAGGAGGGAGGAGGAGGAAGATTGGTAGGGGG
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Coding sequence (CDS) from alignment at chr24:631655..633554-

>NO24G02320.1 ID=NO24G02320.1|Name=NO24G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr24:631655..633554- (Nannochloropsis oceanica)
ATGCCACCACCGATCGCAACTGCAGCACCGGCGCCGCCGCCTCCATCCAG
ATACCCGAGCACCGCAAGAGGGCCCCCTCCACCTTTTCCCAGCTTGCCAG
ACAAGGAGATATACGAGCATATGCTTCCTCCTTCCGAGGCAGCAACCCAC
GTGTTAGATGCCCGCAGCGGGATGATGTTTTTTGGTGGCGTTCTCTTGGC
AGTGGCAGGCAACGTTCTCGTCGCCCGTAGATACGGCAAGCGGGTCATGA
GCTGGGCTGTCCCGAAACAAAACAAACATAATGCCTATGCCAAAAGAGAG
CTGTACAAAGAGTACTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGC
ATATTTTTCAGCGGCGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCT
ACGCATGGATGATGGAGGAACGCGAGAGAGAGGAGCTGCGGGAGAAGCTT
CACCGCTTCTACCACGAGAAGGCGGACGAGCACACATGGCAAGGTTTCTC
GGCTGAGGATTTCTTTGGAGGCGAAGAGCATCGAAGGGGCTGGCAAAGAC
GACGGGGGGGGAAGGGCCCTCCTTCCCTCCTTCCTCCTCCTCCGAAAAGC
GCGCCAAGGCCTTGA
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Synonyms
Publications