NO24G02200, NO24G02200 (gene) Nannochloropsis oceanica

Overview
NameNO24G02200
Unique NameNO24G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1921
Alignment locationchr24:587814..589734 -

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:587814..589734 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036877SUI1_dom_sf
IPR001950TIF_SUI1
Homology
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_009032961.1 (hypothetical protein AURANDRAFT_20639 [Aureococcus anophagefferens] >EGB11838.1 hypothetical protein AURANDRAFT_20639 [Aureococcus anophagefferens])

HSP 1 Score: 159.5 bits (402), Expect = 1.000e-35
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 0 
Query:   78 ILNIAARDPFLDASEQATDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            I N+A  D F DA E+A D +KVHIRVQQRNGRKCITTV GLAD+LD+KRI KAFKKNF CNGA+T D E+G+++QLSGDQR NV  FL ++EIC + Q+VIHGF
Sbjct:    9 IQNLAGFDAFKDADEEAGDQSKVHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFQCNGAVTKDSELGEIVQLSGDQRTNVSSFLTEQEICKKAQVVIHGF 113
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_008896994.1 (translation initiation factor SUI1 [Phytophthora parasitica INRA-310] >ETI34331.1 translation initiation factor SUI1 [Phytophthora parasitica P1569] >ETK74712.1 translation initiation factor SUI1 [Phytophthora parasitica] >ETL28138.1 translation initiation factor SUI1 [Phytophthora parasitica] >ETL81384.1 translation initiation factor SUI1 [Phytophthora parasitica] >ETM34584.1 translation initiation factor SUI1 [Phytophthora parasitica] >ETN17429.1 translation initiation factor SUI1 [Phytophthora parasitica INRA-310] >ETO63148.1 translation initiation factor SUI1 [Phytophthora parasitica P1976] >ETP04235.1 translation initiation factor SUI1 [Phytophthora parasitica CJ01A1] >ETP32384.1 translation initiation factor SUI1 [Phytophthora parasitica P10297] >KUF86416.1 translation factor sui1 protein [Phytophthora nicotianae] >KUF95687.1 hypothetical protein AM588_10009354 [Phytophthora nicotianae] >OWZ20344.1 Translation initiation factor SUI1 [Phytophthora megakarya] >POM72847.1 Translation initiation factor SUI1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 157.1 bits (396), Expect = 5.100e-35
Identity = 71/108 (65.74%), Postives = 90/108 (83.33%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQAT-DSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A+I N    D F DA + ++    KVH+RVQQRNGRKC+TTV GLAD+LDVKRILKAFKKNFSCNGAI  D+E+G++IQLSGDQR N+++FL+D+EICT+ Q+V+HGF
Sbjct:    2 ADIQNFQTFDAFADAKDDSSIGGGKVHVRVQQRNGRKCLTTVQGLADDLDVKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICTDAQVVLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: CBJ26849.1 (eukaryotic translation initiation factor 1-SUI1 [Ectocarpus siliculosus])

HSP 1 Score: 156.8 bits (395), Expect = 6.600e-35
Identity = 68/106 (64.15%), Postives = 89/106 (83.96%), Query Frame = 0 
Query:   77 EILNIAARDPFLDASEQATDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            +I N+++ DPF D+ E+  D  KVH+RVQQR+GRKCITTV GLAD+LD+KRILKAFKKNFSCNGAI +D E G+++Q+SGDQR N+ +FLVD++IC   Q+V+HGF
Sbjct:    3 DIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDTEGGEIVQMSGDQRTNIHEFLVDQQICVASQVVLHGF 108
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_009517834.1 (hypothetical protein PHYSODRAFT_471024 [Phytophthora sojae] >EGZ30559.1 hypothetical protein PHYSODRAFT_471024 [Phytophthora sojae])

HSP 1 Score: 155.6 bits (392), Expect = 1.500e-34
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQAT-DSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A+I N    D F DA + ++    KVH+RVQQRNGRKC+TTV GLAD+LDVKRILKAFKKNFSCNGAI  D+E+G++IQLSGDQR N+++FL+D+EIC++ Q+V+HGF
Sbjct:    2 ADIQNFQTFDAFADAKDDSSIGGGKVHVRVQQRNGRKCLTTVQGLADDLDVKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICSDSQVVLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_002907417.1 (eukaryotic translation initiation factor 1b, putative [Phytophthora infestans T30-4] >EEY63981.1 eukaryotic translation initiation factor 1b, putative [Phytophthora infestans T30-4])

HSP 1 Score: 154.8 bits (390), Expect = 2.500e-34
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQAT-DSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A+I N    D F DA + ++    KVH+RVQQRNGRKC+TTV GLAD+LDVKRILKAFKKNFSCNGAI  D+E+G++IQLSGDQR N+++FL+D+EIC + Q+V+HGF
Sbjct:    2 ADIQNFQTFDAFADAKDDSSIGGGKVHVRVQQRNGRKCLTTVQGLADDLDVKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICMDSQVVLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: GAY05233.1 (eukaryotic translation initiation factor 1b, putative [Pythium insidiosum] >GAY00975.1 eukaryotic translation initiation factor 1b, putative [Pythium insidiosum] >GAY00976.1 eukaryotic translation initiation factor 1b, putative [Pythium insidiosum])

HSP 1 Score: 154.8 bits (390), Expect = 2.500e-34
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQA-TDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A+I      D F DA + +     KVH+RVQQRNGRKC+TTV GLAD+LD+KRILKAFKKNFSCNGAI  D+E+G++IQLSGDQR N+KDFLVD+EIC++ Q+V+HGF
Sbjct:    2 ADIPTFQTFDAFADAKDDSGLGGGKVHVRVQQRNGRKCLTTVQGLADDLDIKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRNNIKDFLVDQEICSDSQVVLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_009840418.1 (translation initiation factor SUI1 [Aphanomyces astaci] >ETV69975.1 translation initiation factor SUI1 [Aphanomyces astaci])

HSP 1 Score: 153.7 bits (387), Expect = 5.600e-34
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQA-TDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A I N    + F DA++ +   S KVH+RVQQRNGRKCI+TV GLAD+LD+KRILKAFKKNFSCNGAI  DEE G+VIQLSGDQR NVK FLVD+EICTE Q+ +HGF
Sbjct:    2 ATIPNFQNFNAFEDAADNSGMGSGKVHVRVQQRNGRKCISTVQGLADDLDIKRILKAFKKNFSCNGAIVKDEEAGEVIQLSGDQRTNVKSFLVDQEICTEAQIQLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_024577291.1 (translation initiation factor sui1 [Plasmopara halstedii] >CEG40922.1 translation initiation factor sui1 [Plasmopara halstedii])

HSP 1 Score: 152.1 bits (383), Expect = 1.600e-33
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 0 
Query:   77 EILNIAARDPFLDASEQAT-DSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            +I N    D F DA + ++    KVH+RVQQRNGRKC+TTV GLAD+LDVKRILKAFKKNFSCNGAI  D+E+G++IQLSGDQR N ++FL+D+EIC++ Q+V+HGF
Sbjct:    3 DIQNFQTFDAFADAKDDSSIGGGKVHVRVQQRNGRKCLTTVQGLADDLDVKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRTNTREFLLDQEICSDTQVVLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_008876951.1 (translation initiation factor SUI1 [Aphanomyces invadans] >ETV94189.1 translation initiation factor SUI1 [Aphanomyces invadans])

HSP 1 Score: 151.4 bits (381), Expect = 2.800e-33
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 0 
Query:   76 AEILNIAARDPFLDASEQA-TDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            A I N    + F DA++ +     KVH+RVQQRNGRKCI+TV GLAD+LD+KRILKAFKKNFSCNGAI  DEE G+VIQLSGDQR NVK FLVD+EICTE Q+ +HGF
Sbjct:    2 ATIPNFTNFNAFEDAADNSGMGGGKVHVRVQQRNGRKCISTVQGLADDLDIKRILKAFKKNFSCNGAIVKDEESGEVIQLSGDQRTNVKAFLVDQEICTEAQIQLHGF 109
[Close]
BLAST of NO24G02200 vs. NCBI_GenBank
Match: XP_008616529.1 (hypothetical protein SDRG_12244 [Saprolegnia diclina VS20] >XP_012198850.1 hypothetical protein SPRG_04540 [Saprolegnia parasitica CBS 223.65] >XP_012205600.1 hypothetical protein SPRG_11063 [Saprolegnia parasitica CBS 223.65] >EQC29962.1 hypothetical protein SDRG_12244 [Saprolegnia diclina VS20] >KDO23616.1 hypothetical protein SPRG_11063 [Saprolegnia parasitica CBS 223.65] >KDO30639.1 hypothetical protein SPRG_04540 [Saprolegnia parasitica CBS 223.65] >OQR84213.1 eukaryotic translation initiation factor 1b [Achlya hypogyna])

HSP 1 Score: 151.0 bits (380), Expect = 3.600e-33
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:   87 FLDASEQA-TDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            F DA++ +   S KVH+RVQQRNGRKCI+TV GLAD+LD+KRILKAFKKNFSCNGAI  DEE+G++IQLSGDQR+NVK FLVD+EIC E Q+ +HGF
Sbjct:   13 FEDAADSSGVGSGKVHVRVQQRNGRKCISTVQGLADDLDIKRILKAFKKNFSCNGAIVKDEELGEIIQLSGDQRSNVKSFLVDQEICLESQIQLHGF 109
The following BLAST results are available for this feature:
BLAST of NO24G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009032961.11.000e-3568.57hypothetical protein AURANDRAFT_20639 [Aureococcus... [more]
XP_008896994.15.100e-3565.74translation initiation factor SUI1 [Phytophthora p... [more]
CBJ26849.16.600e-3564.15eukaryotic translation initiation factor 1-SUI1 [E... [more]
XP_009517834.11.500e-3464.81hypothetical protein PHYSODRAFT_471024 [Phytophtho... [more]
XP_002907417.12.500e-3464.81eukaryotic translation initiation factor 1b, putat... [more]
GAY05233.12.500e-3465.74eukaryotic translation initiation factor 1b, putat... [more]
XP_009840418.15.600e-3469.44translation initiation factor SUI1 [Aphanomyces as... [more]
XP_024577291.11.600e-3364.49translation initiation factor sui1 [Plasmopara hal... [more]
XP_008876951.12.800e-3368.52translation initiation factor SUI1 [Aphanomyces in... [more]
XP_008616529.13.600e-3372.16hypothetical protein SDRG_12244 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02200.1NO24G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02200.1NO24G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02200 ID=NO24G02200|Name=NO24G02200|organism=Nannochloropsis oceanica|type=gene|length=1921bp
GTCGTCGCAGTGCCGTTGGGCGCTATGGATCGGAAATGTGTGGTGGGGTC
GTAGGGGCGGTGAGATGGTGGTATGGACATAGTCGTTAGCTTTGCTTCGT
CGTGAGGGAGAGGCAGGCGATGAGAGGCAAGATTTGAGAGCAAGCAGGAA
CAAAGGCAAGGCCTTGCGACAGATAATTGTCGTTGTTGTGGGAGAGTCGA
GGGTTAACCAGACTTAAGATTATCAGCGGGGGGTTTGGTCCAGACTAGGA
GGGCTAGCCAGGCGCTGTGACGAGGCGGGGGGAGACAATTACGATACTCG
TTCATGCAAACGATGGCCCGTCGGGCAATGGCGCCTTGTAGGGGAGGATG
ATGGATTAAAGCACCAACGACACTAGTCGGGGTGACGATGGATGATCGAT
GGAAGGCGTGTCTAATGCGATTGGATTAAAACATGCTTACAGAGGCACTG
GTGGAAAGAGGATTACTACGGGCACTCTGCGGGCGGGGTGGAACCGCAAC
ACATGCCTTCACGTGCTCAATCCTGCCCTCTGTCCTCACCTTTCCCCCAC
AGAAGCAACAAGCCTTCTTATACTCTATCAGCCCAGGGCGCCACTACCAC
ACCACCTTCTTCCTTGCATGAGCGCGGAAATCCTCAACATCGCAGCACGG
Ggtacgtttaatatgtggtctggaaatgggtgagagtgtgagtgttgtgg
agcagcatttggtgtgctggaggggcgagagggaagaaagcagggtagga
gggagggctggcctgcgtgcgtgcgcgccaggagccatcggtgggggggt
ttgtgtcatcattgctcatgctgcttggtgtttgaatataattgcttgcg
tgtgagcgtgtgaaagaggaggataggtagggggagggccgagagggacg
cacaccctccatctcccttcatctttgctacaacgtcgtgtcccccgcgc
acacaagcatacatgtgtatgcgctcatgcatacatgcgtgtgtttgcat
gtgacaatgtgcatgtgtacatgtgtgggtgtgtcactcatccccctgat
tcttttcctccctccatccctcccttcttcaccctccctctctttactcg
cctgcagATCCTTTCCTGGACGCCAGCGAGCAAGCCACCGACAGTGCCAA
GGTGCACATCCGTGTGCAGCAGCGAAACGGCCGCAAGTGCATCACCACCG
TAGCGGGTCTTGgtacgtccttgccctccctcttttccctccctcccctc
cctcccctttccttacacatacactacaccaccccgtctcgcacacgtag
aaacagatactgtccttgccagatcacaatgtctttttttggaaaatgaa
gtttgtggctaattcgttcatcctcccgtctattccccctccttctgtag
CCGATGAGCTGGACGTGAAGCGGATCCTAAAGGCCTTCAAAAAGAATTTC
TCCTGCAACGGAGCTATCACCACTGATGAGGAGATTGGGCAGgtcgggcg
ggagggcaagaagggaaggagggaaagaagggaagagggagggagggagg
gagggaggggggacagtgcattgaattcttacacaactgtcgtcttgttg
gacctctcactttttccttccttctcactttttccttccctccttcccta
cctccttcctcccttccttccctcctctctttccagGTCATCCAGCTTTC
GGGCGACCAGCGCGCGAACGTGAAAGACTTTTTGGTTGACGAGGAGATCT
GCACGGAGGGACAGTTGGTGATTCACGGGTTCTAATCAGAAGCCTTAGTT
CTATTCAGAAGCCTTAGGGAGGGAGGGCTGGTGAATCACGGGTTGCAATG
GGAAGCCTTTGGGAGGGACGGCTGGCGAATCACGGGTTGCAATGGGAAGC
CTTAGGGAAGGAGGGAGGGAG
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protein sequence of NO24G02200.1

>NO24G02200.1-protein ID=NO24G02200.1-protein|Name=NO24G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MEGVSNAIGLKHAYRGTGGKRITTGTLRAGWNRNTCLHVLNPALCPHLSP
TEATSLLILYQPRAPLPHHLLPCMSAEILNIAARDPFLDASEQATDSAKV
HIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQ
VIQLSGDQRANVKDFLVDEEICTEGQLVIHGF*
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Synonyms
Publications