NO24G02200.1, NO24G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02200.1
Unique NameNO24G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr24:587814..589734 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:587814..589734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02200.1 vs.
Match: XP_009032961.1 (hypothetical protein AURANDRAFT_20639 [Aureococcus anophagefferens]; EGB11838.1 hypothetical protein AURANDRAFT_20639 [Aureococcus anophagefferens])

HSP 1 Score: 159.5 bits (402), Expect = 1.000e-35
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 0 
Query:   78 ILNIAARDPFLDASEQATDSAKVHIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQVIQLSGDQRANVKDFLVDEEICTEGQLVIHGF 183
            I N+A  D F DA E+A D +KVHIRVQQRNGRKCITTV GLAD+LD+KRI KAFKKNF CNGA+T D E+G+++QLSGDQR NV  FL ++EIC + Q+VIHGF
Sbjct:    9 IQNLAGFDAFKDADEEAGDQSKVHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFQCNGAVTKDSELGEIVQLSGDQRTNVSSFLTEQEICKKAQVVIHGF 113
The following BLAST results are available for this feature:
BLAST of NO24G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009032961.11.000e-3568.57hypothetical protein AURANDRAFT_20639 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02200NO24G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02200.1NO24G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02200.1.cds1NO24G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02200.1.cds2NO24G02200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02200.1.cds3NO24G02200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02200.1.cds4NO24G02200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02200.1 ID=NO24G02200.1|Name=NO24G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
GTCGTCGCAGTGCCGTTGGGCGCTATGGATCGGAAATGTGTGGTGGGGTC
GTAGGGGCGGTGAGATGGTGGTATGGACATAGTCGTTAGCTTTGCTTCGT
CGTGAGGGAGAGGCAGGCGATGAGAGGCAAGATTTGAGAGCAAGCAGGAA
CAAAGGCAAGGCCTTGCGACAGATAATTGTCGTTGTTGTGGGAGAGTCGA
GGGTTAACCAGACTTAAGATTATCAGCGGGGGGTTTGGTCCAGACTAGGA
GGGCTAGCCAGGCGCTGTGACGAGGCGGGGGGAGACAATTACGATACTCG
TTCATGCAAACGATGGCCCGTCGGGCAATGGCGCCTTGTAGGGGAGGATG
ATGGATTAAAGCACCAACGACACTAGTCGGGGTGACGATGGATGATCGAT
GGAAGGCGTGTCTAATGCGATTGGATTAAAACATGCTTACAGAGGCACTG
GTGGAAAGAGGATTACTACGGGCACTCTGCGGGCGGGGTGGAACCGCAAC
ACATGCCTTCACGTGCTCAATCCTGCCCTCTGTCCTCACCTTTCCCCCAC
AGAAGCAACAAGCCTTCTTATACTCTATCAGCCCAGGGCGCCACTACCAC
ACCACCTTCTTCCTTGCATGAGCGCGGAAATCCTCAACATCGCAGCACGG
GATCCTTTCCTGGACGCCAGCGAGCAAGCCACCGACAGTGCCAAGGTGCA
CATCCGTGTGCAGCAGCGAAACGGCCGCAAGTGCATCACCACCGTAGCGG
GTCTTGCCGATGAGCTGGACGTGAAGCGGATCCTAAAGGCCTTCAAAAAG
AATTTCTCCTGCAACGGAGCTATCACCACTGATGAGGAGATTGGGCAGGT
CATCCAGCTTTCGGGCGACCAGCGCGCGAACGTGAAAGACTTTTTGGTTG
ACGAGGAGATCTGCACGGAGGGACAGTTGGTGATTCACGGGTTCTAATCA
GAAGCCTTAGTTCTATTCAGAAGCCTTAGGGAGGGAGGGCTGGTGAATCA
CGGGTTGCAATGGGAAGCCTTTGGGAGGGACGGCTGGCGAATCACGGGTT
GCAATGGGAAGCCTTAGGGAAGGAGGGAGGGAG
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protein sequence of NO24G02200.1

>NO24G02200.1-protein ID=NO24G02200.1-protein|Name=NO24G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MEGVSNAIGLKHAYRGTGGKRITTGTLRAGWNRNTCLHVLNPALCPHLSP
TEATSLLILYQPRAPLPHHLLPCMSAEILNIAARDPFLDASEQATDSAKV
HIRVQQRNGRKCITTVAGLADELDVKRILKAFKKNFSCNGAITTDEEIGQ
VIQLSGDQRANVKDFLVDEEICTEGQLVIHGF*
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mRNA from alignment at chr24:587814..589734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02200.1 ID=NO24G02200.1|Name=NO24G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at chr24:587814..589734- (Nannochloropsis oceanica)
GTCGTCGCAGTGCCGTTGGGCGCTATGGATCGGAAATGTGTGGTGGGGTC
GTAGGGGCGGTGAGATGGTGGTATGGACATAGTCGTTAGCTTTGCTTCGT
CGTGAGGGAGAGGCAGGCGATGAGAGGCAAGATTTGAGAGCAAGCAGGAA
CAAAGGCAAGGCCTTGCGACAGATAATTGTCGTTGTTGTGGGAGAGTCGA
GGGTTAACCAGACTTAAGATTATCAGCGGGGGGTTTGGTCCAGACTAGGA
GGGCTAGCCAGGCGCTGTGACGAGGCGGGGGGAGACAATTACGATACTCG
TTCATGCAAACGATGGCCCGTCGGGCAATGGCGCCTTGTAGGGGAGGATG
ATGGATTAAAGCACCAACGACACTAGTCGGGGTGACGATGGATGATCGAT
GGAAGGCGTGTCTAATGCGATTGGATTAAAACATGCTTACAGAGGCACTG
GTGGAAAGAGGATTACTACGGGCACTCTGCGGGCGGGGTGGAACCGCAAC
ACATGCCTTCACGTGCTCAATCCTGCCCTCTGTCCTCACCTTTCCCCCAC
AGAAGCAACAAGCCTTCTTATACTCTATCAGCCCAGGGCGCCACTACCAC
ACCACCTTCTTCCTTGCATGAGCGCGGAAATCCTCAACATCGCAGCACGG
GGTACGTTTAATATGTGGTCTGGAAATGGGTGAGAGTGTGAGTGTTGTGG
AGCAGCATTTGGTGTGCTGGAGGGGCGAGAGGGAAGAAAGCAGGGTAGGA
GGGAGGGCTGGCCTGCGTGCGTGCGCGCCAGGAGCCATCGGTGGGGGGGT
TTGTGTCATCATTGCTCATGCTGCTTGGTGTTTGAATATAATTGCTTGCG
TGTGAGCGTGTGAAAGAGGAGGATAGGTAGGGGGAGGGCCGAGAGGGACG
CACACCCTCCATCTCCCTTCATCTTTGCTACAACGTCGTGTCCCCCGCGC
ACACAAGCATACATGTGTATGCGCTCATGCATACATGCGTGTGTTTGCAT
GTGACAATGTGCATGTGTACATGTGTGGGTGTGTCACTCATCCCCCTGAT
TCTTTTCCTCCCTCCATCCCTCCCTTCTTCACCCTCCCTCTCTTTACTCG
CCTGCAGATCCTTTCCTGGACGCCAGCGAGCAAGCCACCGACAGTGCCAA
GGTGCACATCCGTGTGCAGCAGCGAAACGGCCGCAAGTGCATCACCACCG
TAGCGGGTCTTGGTACGTCCTTGCCCTCCCTCTTTTCCCTCCCTCCCCTC
CCTCCCCTTTCCTTACACATACACTACACCACCCCGTCTCGCACACGTAG
AAACAGATACTGTCCTTGCCAGATCACAATGTCTTTTTTTGGAAAATGAA
GTTTGTGGCTAATTCGTTCATCCTCCCGTCTATTCCCCCTCCTTCTGTAG
CCGATGAGCTGGACGTGAAGCGGATCCTAAAGGCCTTCAAAAAGAATTTC
TCCTGCAACGGAGCTATCACCACTGATGAGGAGATTGGGCAGGTCGGGCG
GGAGGGCAAGAAGGGAAGGAGGGAAAGAAGGGAAGAGGGAGGGAGGGAGG
GAGGGAGGGGGGACAGTGCATTGAATTCTTACACAACTGTCGTCTTGTTG
GACCTCTCACTTTTTCCTTCCTTCTCACTTTTTCCTTCCCTCCTTCCCTA
CCTCCTTCCTCCCTTCCTTCCCTCCTCTCTTTCCAGGTCATCCAGCTTTC
GGGCGACCAGCGCGCGAACGTGAAAGACTTTTTGGTTGACGAGGAGATCT
GCACGGAGGGACAGTTGGTGATTCACGGGTTCTAATCAGAAGCCTTAGTT
CTATTCAGAAGCCTTAGGGAGGGAGGGCTGGTGAATCACGGGTTGCAATG
GGAAGCCTTTGGGAGGGACGGCTGGCGAATCACGGGTTGCAATGGGAAGC
CTTAGGGAAGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at chr24:587814..589734-

>NO24G02200.1 ID=NO24G02200.1|Name=NO24G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr24:587814..589734- (Nannochloropsis oceanica)
ATGGAAGGCGTGTCTAATGCGATTGGATTAAAACATGCTTACAGAGGCAC
TGGTGGAAAGAGGATTACTACGGGCACTCTGCGGGCGGGGTGGAACCGCA
ACACATGCCTTCACGTGCTCAATCCTGCCCTCTGTCCTCACCTTTCCCCC
ACAGAAGCAACAAGCCTTCTTATACTCTATCAGCCCAGGGCGCCACTACC
ACACCACCTTCTTCCTTGCATGAGCGCGGAAATCCTCAACATCGCAGCAC
GGGATCCTTTCCTGGACGCCAGCGAGCAAGCCACCGACAGTGCCAAGGTG
CACATCCGTGTGCAGCAGCGAAACGGCCGCAAGTGCATCACCACCGTAGC
GGGTCTTGCCGATGAGCTGGACGTGAAGCGGATCCTAAAGGCCTTCAAAA
AGAATTTCTCCTGCAACGGAGCTATCACCACTGATGAGGAGATTGGGCAG
GTCATCCAGCTTTCGGGCGACCAGCGCGCGAACGTGAAAGACTTTTTGGT
TGACGAGGAGATCTGCACGGAGGGACAGTTGGTGATTCACGGGTTCTAA
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Synonyms
Publications